Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40673 Trifolium pratense HOM05D005298 ORTHO05D037798 1.3e-73 279.6 142 100.0
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 5.7e-37 157.9 111 78.4
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 2.2e-36 156.0 111 77.5
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 4.8e-36 154.8 111 75.7
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 4.1e-35 151.8 111 76.6
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 4.2e-32 141.7 111 69.4
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 2.1e-31 139.4 111 69.4
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 4.7e-31 138.3 111 70.3
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 4.4e-29 131.7 111 64.9
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 1.3e-28 130.2 111 64.0
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 5.3e-27 124.8 111 64.0
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 4.5e-26 121.7 111 62.2
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 4.5e-26 121.7 111 62.2
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 4.5e-26 121.7 112 61.6
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 1.7e-25 119.8 112 61.6
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 1.1e-24 117.1 112 58.9
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 4.2e-24 115.2 111 59.5
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 9.4e-24 114.0 111 59.5
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 1.6e-23 113.2 112 56.2
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 2.1e-23 112.8 111 58.6
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 2.7e-23 112.5 112 59.8
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 8.0e-23 110.9 111 58.6
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 1.0e-22 110.5 111 58.6
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 1.4e-22 110.2 111 55.9
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 6.8e-22 107.8 111 53.2
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 8.8e-22 107.5 112 54.5
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 8.8e-22 107.5 112 53.6
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 8.8e-22 107.5 112 53.6
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 2.6e-21 105.9 111 52.3
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 3.4e-21 105.5 115 53.9
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 5.7e-21 104.8 112 54.5
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 5.7e-21 104.8 112 54.5
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 9.8e-21 104.0 112 55.4
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 9.8e-21 104.0 112 51.8
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 1.3e-20 103.6 111 52.3
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 1.3e-20 103.6 111 56.8
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 1.3e-20 103.6 112 52.7
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 1.3e-20 103.6 111 55.0
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 1.7e-20 103.2 133 48.1
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 2.2e-20 102.8 115 53.9
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 2.2e-20 102.8 115 53.0
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 2.8e-20 102.4 115 51.3
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 2.8e-20 102.4 111 53.2
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 3.7e-20 102.1 111 54.1
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 4.8e-20 101.7 111 52.3
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 6.3e-20 101.3 111 51.4
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 6.3e-20 101.3 111 51.4
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 6.3e-20 101.3 111 51.4
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 6.3e-20 101.3 111 54.1
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 8.3e-20 100.9 111 52.3
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 1.1e-19 100.5 111 54.1
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 1.1e-19 100.5 111 53.2
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 1.1e-19 100.5 115 52.2
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 1.8e-19 99.8 112 56.2
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 1.8e-19 99.8 111 49.5
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 1.8e-19 99.8 112 51.8
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 2.4e-19 99.4 111 54.1
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 2.4e-19 99.4 111 51.4
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.4e-19 99.4 111 55.0
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 3.1e-19 99.0 112 53.6
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 3.1e-19 99.0 111 50.5
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 3.1e-19 99.0 111 52.3
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 4.1e-19 98.6 111 50.5
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 4.1e-19 98.6 115 50.4
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 2.7e-18 95.9 110 50.0
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 2.7e-18 95.9 111 47.7
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 3.5e-18 95.5 111 52.3
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 4.5e-18 95.1 119 48.7
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 5.9e-18 94.7 111 51.4
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 1.0e-17 94.0 110 50.9
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 1.7e-17 93.2 112 51.8
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 3.8e-17 92.0 114 48.2
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 1.1e-16 90.5 110 47.3
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 1.9e-16 89.7 111 47.7
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 2.5e-16 89.4 111 50.5
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 4.2e-16 88.6 110 50.9
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 1.6e-15 86.7 113 44.2
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 2.1e-15 86.3 111 45.0
TPR.G21809 Trifolium pratense HOM05D005298 ORTHO05D037798 2.3e-14 82.8 67 65.7
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 1.2e-13 80.5 72 58.3
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 1.2e-13 80.5 78 55.1
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 1.2e-13 80.5 111 45.0
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.0e-13 79.7 73 61.6
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 3.4e-13 79.0 111 42.3
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 3.4e-13 79.0 111 44.1
TPR.G13833 Trifolium pratense HOM05D005298 ORTHO05D037798 2.8e-12 75.9 88 48.9
SEGI_08042 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 1.3e-09 67.0 112 42.0
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 2.3e-09 66.2 110 38.2
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 1.1e-08 63.9 73 52.1
Cc03_g00330 Coffea canephora HOM05D005298 ORTHO05D008015 3.3e-08 62.4 71 53.5
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 4.3e-08 62.0 111 35.1
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 4.0e-06 55.5 111 35.1
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 4.0e-06 55.5 111 35.1
Zm00001eb304680 Zea mays HOM05D005298 ORTHO05D008015 8.9e-06 54.3 65 46.2


User provided reference genes

Program Settings