Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40661 Trifolium pratense HOM05D000038 ORTHO05D413096 2.9e-58 228.4 121 100.0
Medtr8g011370 Medicago truncatula HOM05D000038 ORTHO05D000143 6.4e-29 131.0 93 74.2
TPR.G28987 Trifolium pratense HOM05D000038 ORTHO05D000143 3.5e-27 125.2 95 74.7
Medtr8g011410 Medicago truncatula HOM05D000038 ORTHO05D000143 8.6e-26 120.6 97 72.2
TPR.G7304 Trifolium pratense HOM05D000038 ORTHO05D000143 1.6e-24 116.3 93 71.0
TPR.G36106 Trifolium pratense HOM05D000038 ORTHO05D000143 4.4e-22 108.2 86 73.3
Lj2g0006297 Lotus japonicus HOM05D000038 ORTHO05D000143 9.8e-22 107.1 94 67.0
Psat0s1877g0080 Pisum sativum HOM05D000038 ORTHO05D000143 1.7e-21 106.3 97 63.9
VMungo0331G2029 Vigna mungo HOM05D000038 ORTHO05D000143 3.7e-21 105.1 95 61.1
Glyma.15G250200 Glycine max HOM05D000038 ORTHO05D000143 2.4e-20 102.4 95 58.9
Lj5g0003528 Lotus japonicus HOM05D000038 ORTHO05D000143 9.2e-20 100.5 94 62.8
Psat4g206680 Pisum sativum HOM05D000038 ORTHO05D000143 2.7e-19 99.0 94 64.9
Glyma.03G090200 Glycine max HOM05D000038 ORTHO05D000143 1.3e-18 96.7 95 57.9
Glyma.03G090500 Glycine max HOM05D000038 ORTHO05D000143 1.3e-18 96.7 95 57.9
Medtr8g011440 Medicago truncatula HOM05D000038 ORTHO05D000143 5.0e-18 94.7 72 75.0
Phvul.010G031900 Phaseolus vulgaris HOM05D000038 ORTHO05D000143 8.6e-18 94.0 95 53.7
Lalb_Chr13g0290991 Lupinus albus HOM05D000038 ORTHO05D000143 9.5e-17 90.5 93 57.0
VMungo0331G0041 Vigna mungo HOM05D000038 ORTHO05D000143 6.2e-16 87.8 93 52.7
Phvul.010G032000 Phaseolus vulgaris HOM05D000038 ORTHO05D000143 1.3e-13 80.1 93 51.6
CiPaw.13G167700 Carya illinoinensis HOM05D000038 ORTHO05D000143 1.9e-12 76.3 95 48.4
CiPaw.13G168000 Carya illinoinensis HOM05D000038 ORTHO05D000143 1.2e-11 73.6 94 48.9
QL01p018411 Quercus lobata HOM05D000038 ORTHO05D000143 3.5e-11 72.0 76 48.7
QL01p018480 Quercus lobata HOM05D000038 ORTHO05D000143 7.8e-11 70.9 72 52.8
MSTRG.4949 Avicennia marina HOM05D000038 ORTHO05D000143 1.3e-10 70.1 92 44.6
QL93p0093_0034 Quercus lobata HOM05D000038 ORTHO05D000143 1.7e-10 69.7 88 47.7
Thecc.09G220000 Theobroma cacao HOM05D000038 ORTHO05D000143 3.9e-10 68.6 87 44.8
Haze_23031 Corylus avellana HOM05D000038 ORTHO05D000143 5.1e-10 68.2 94 44.7
CSS0025601 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000143 2.5e-09 65.9 80 47.5
Glyma.08G176200 Glycine max HOM05D000038 ORTHO05D000143 4.3e-09 65.1 95 41.1
Atru.chr3.2460 Acer truncatum HOM05D000038 ORTHO05D000143 5.6e-09 64.7 75 45.3
MBI04_g14209_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000143 5.6e-09 64.7 88 45.5
MD03G1021800 Malus domestica HOM05D000038 ORTHO05D000143 5.6e-09 64.7 93 44.1
CiPaw.13G167800 Carya illinoinensis HOM05D000038 ORTHO05D000143 9.5e-09 63.9 96 46.9
MBI17_g19517_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000143 9.5e-09 63.9 92 44.6
CSS0033211 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000143 1.2e-08 63.5 91 42.9
Rhsim01G0187600 Rhododendron simsii HOM05D000038 ORTHO05D000143 1.2e-08 63.5 72 52.8
Rhsim01G0188700 Rhododendron simsii HOM05D000038 ORTHO05D000143 1.2e-08 63.5 72 52.8
Ciclev10014312m.g Citrus clementina HOM05D000038 ORTHO05D000143 1.6e-08 63.2 97 40.2
Hma1.2p1_1603F.1_g293220 Hydrangea macrophylla HOM05D000038 ORTHO05D000143 2.1e-08 62.8 83 45.8
MBI04_g14214_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000143 2.1e-08 62.8 90 44.4
MBI04_g32784_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000143 2.1e-08 62.8 90 44.4
Rhsim01G0188400 Rhododendron simsii HOM05D000038 ORTHO05D000143 2.1e-08 62.8 83 50.6
Potri.T084500 Populus trichocarpa HOM05D000038 ORTHO05D000143 2.8e-08 62.4 91 42.9
Potri.003G212000 Populus trichocarpa HOM05D000038 ORTHO05D000143 3.6e-08 62.0 91 42.9
Rhsim01G0187700 Rhododendron simsii HOM05D000038 ORTHO05D000143 3.6e-08 62.0 83 47.0
vmacro20872 Vaccinium macrocarpon HOM05D000038 ORTHO05D000143 3.6e-08 62.0 83 49.4
CSS0049834 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000143 4.7e-08 61.6 92 42.4
Nn2g15641 Nelumbo nucifera HOM05D000038 ORTHO05D000143 4.7e-08 61.6 80 42.5
Psat6g123680 Pisum sativum HOM05D000038 ORTHO05D000143 4.7e-08 61.6 39 76.9
QL01p018318 Quercus lobata HOM05D000038 ORTHO05D000143 8.1e-08 60.8 96 43.8
PSO339G3185 Papaver somniferum HOM05D000038 ORTHO05D000143 1.1e-07 60.5 96 38.5
QL01p018356 Quercus lobata HOM05D000038 ORTHO05D000143 1.1e-07 60.5 107 39.3
Rhsim01G0188800 Rhododendron simsii HOM05D000038 ORTHO05D000143 1.1e-07 60.5 83 48.2
Gorai.004G092300 Gossypium raimondii HOM05D000038 ORTHO05D000143 1.4e-07 60.1 82 42.7
MBI04_g40029_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000143 1.4e-07 60.1 92 42.4
RcHm_v2.0_Chr5g0078561 Rosa chinensis HOM05D000038 ORTHO05D000143 1.4e-07 60.1 94 44.7
CSS0033918 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000143 1.8e-07 59.7 92 40.2
MD03G1019800 Malus domestica HOM05D000038 ORTHO05D000143 2.3e-07 59.3 98 40.8
Rhsim01G0188300 Rhododendron simsii HOM05D000038 ORTHO05D000143 2.3e-07 59.3 83 47.0
RcHm_v2.0_Chr5g0079211 Rosa chinensis HOM05D000038 ORTHO05D000143 2.3e-07 59.3 94 42.6
RcHm_v2.0_Chr5g0079241 Rosa chinensis HOM05D000038 ORTHO05D000143 2.3e-07 59.3 94 42.6
vmacro12705 Vaccinium macrocarpon HOM05D000038 ORTHO05D000143 2.3e-07 59.3 93 45.2
Cfa009664 Carpinus fangiana HOM05D000038 ORTHO05D000143 3.1e-07 58.9 77 48.1
Haze_23032 Corylus avellana HOM05D000038 ORTHO05D000143 3.1e-07 58.9 98 43.9
Migut.D00548 Erythranthe guttata HOM05D000038 ORTHO05D000143 3.1e-07 58.9 88 44.3
FvH4_3g43780 Fragaria vesca HOM05D000038 ORTHO05D000143 3.1e-07 58.9 93 45.2
Gohir.D08G087500 Gossypium hirsutum HOM05D000038 ORTHO05D000143 3.1e-07 58.9 82 41.5
HanXRQChr01g0021071 Helianthus annuus HOM05D000038 ORTHO05D000143 3.1e-07 58.9 83 45.8
MD02G1318100 Malus domestica HOM05D000038 ORTHO05D000143 3.1e-07 58.9 83 41.0
Nn7g36029 Nelumbo nucifera HOM05D000038 ORTHO05D000143 3.1e-07 58.9 91 41.8
Rhsim13G0226300 Rhododendron simsii HOM05D000038 ORTHO05D000143 3.1e-07 58.9 75 45.3
Eucgr.B02603 Eucalyptus grandis HOM05D000038 ORTHO05D000143 4.0e-07 58.5 75 48.0
FAN11G3889 Fragaria x ananassa HOM05D000038 ORTHO05D000143 4.0e-07 58.5 93 45.2
Gohir.A08G077701 Gossypium hirsutum HOM05D000038 ORTHO05D000143 4.0e-07 58.5 91 40.7
RcHm_v2.0_Chr5g0078821 Rosa chinensis HOM05D000038 ORTHO05D000143 4.0e-07 58.5 94 44.7
vmacro21081 Vaccinium macrocarpon HOM05D000038 ORTHO05D000143 4.0e-07 58.5 80 45.0
MSTRG.18402 Avicennia marina HOM05D000038 ORTHO05D000143 5.2e-07 58.2 100 44.0
QL01p018290 Quercus lobata HOM05D000038 ORTHO05D000143 5.2e-07 58.2 93 40.9
ECA248G3423 Erigeron canadensis HOM05D000038 ORTHO05D000143 6.8e-07 57.8 80 41.2
MD11G1021400 Malus domestica HOM05D000038 ORTHO05D000143 6.8e-07 57.8 92 43.5
RcHm_v2.0_Chr5g0078621 Rosa chinensis HOM05D000038 ORTHO05D000143 6.8e-07 57.8 96 42.7
MBI04_g14208_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000143 8.9e-07 57.4 75 45.3
MBI04_g37849_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000143 8.9e-07 57.4 90 42.2
MD11G1021100 Malus domestica HOM05D000038 ORTHO05D000143 8.9e-07 57.4 93 39.8
Ciclev10017816m.g Citrus clementina HOM05D000038 ORTHO05D000143 1.5e-06 56.6 86 45.3
MBI04_g14207_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000143 1.5e-06 56.6 78 44.9
Prupe.6G020400 Prunus persica HOM05D000038 ORTHO05D000143 1.5e-06 56.6 91 40.7
RcHm_v2.0_Chr5g0079131 Rosa chinensis HOM05D000038 ORTHO05D000143 1.5e-06 56.6 95 43.2
CANSAT54G2931 Cannabis sativa HOM05D000038 ORTHO05D000143 2.0e-06 56.2 95 42.1
MD03G1022000 Malus domestica HOM05D000038 ORTHO05D000143 2.0e-06 56.2 92 40.2
QL01p018485 Quercus lobata HOM05D000038 ORTHO05D000143 2.0e-06 56.2 75 41.3
Sopen01g009210 Solanum pennellii HOM05D000038 ORTHO05D000143 2.0e-06 56.2 91 38.5
Ciclev10030742m.g Citrus clementina HOM05D000038 ORTHO05D000143 2.6e-06 55.8 79 44.3
Prupe.2G004700 Prunus persica HOM05D000038 ORTHO05D000143 2.6e-06 55.8 83 41.0
Sabra01G0010400 Salix brachista HOM05D000038 ORTHO05D000143 2.6e-06 55.8 91 45.1
PGSC0003DMG400045997 Solanum tuberosum HOM05D000038 ORTHO05D000143 2.6e-06 55.8 91 42.9
PGSC0003DMG402029906 Solanum tuberosum HOM05D000038 ORTHO05D000143 2.6e-06 55.8 91 42.9
CANSAT54G1406 Cannabis sativa HOM05D000038 ORTHO05D000143 3.4e-06 55.5 91 39.6
Cfa004474 Carpinus fangiana HOM05D000038 ORTHO05D000143 3.4e-06 55.5 90 38.9
Prupe.6G017400 Prunus persica HOM05D000038 ORTHO05D000143 3.4e-06 55.5 95 40.0
QL01p007057 Quercus lobata HOM05D000038 ORTHO05D000143 3.4e-06 55.5 91 44.0
QL04p000143 Quercus lobata HOM05D000038 ORTHO05D000143 3.4e-06 55.5 95 38.9
QL93p0093_0048 Quercus lobata HOM05D000038 ORTHO05D000143 3.4e-06 55.5 75 41.3
vmacro12706 Vaccinium macrocarpon HOM05D000038 ORTHO05D000143 3.4e-06 55.5 93 43.0
CANSAT54G2568 Cannabis sativa HOM05D000038 ORTHO05D000143 4.4e-06 55.1 95 41.1
Duzib170G0948 Durio zibethinus HOM05D000038 ORTHO05D000143 4.4e-06 55.1 81 43.2
MD11G1025600 Malus domestica HOM05D000038 ORTHO05D000143 4.4e-06 55.1 91 40.7
RcHm_v2.0_Chr1g0313611 Rosa chinensis HOM05D000038 ORTHO05D000143 4.4e-06 55.1 75 40.0
SalBow1G8103 Salvia bowleyana HOM05D000038 ORTHO05D000143 4.4e-06 55.1 92 42.4
Cc01_g04050 Coffea canephora HOM05D000038 ORTHO05D000143 5.8e-06 54.7 76 44.7
MD11G1024900 Malus domestica HOM05D000038 ORTHO05D000143 5.8e-06 54.7 95 35.8
PGR102G0944 Punica granatum HOM05D000038 ORTHO05D000143 5.8e-06 54.7 74 41.9
RcHm_v2.0_Chr1g0313461 Rosa chinensis HOM05D000038 ORTHO05D000143 5.8e-06 54.7 75 38.7
RcHm_v2.0_Chr1g0313591 Rosa chinensis HOM05D000038 ORTHO05D000143 5.8e-06 54.7 75 38.7
Actinidia06317 Actinidia chinensis HOM05D000038 ORTHO05D000143 7.6e-06 54.3 84 47.6
Cfa009663 Carpinus fangiana HOM05D000038 ORTHO05D000143 7.6e-06 54.3 92 35.9
Gohir.D01G079566 Gossypium hirsutum HOM05D000038 ORTHO05D000143 7.6e-06 54.3 74 40.5
Gorai.002G104400 Gossypium raimondii HOM05D000038 ORTHO05D000143 7.6e-06 54.3 74 40.5
HanXRQChr15g0480511 Helianthus annuus HOM05D000038 ORTHO05D000143 7.6e-06 54.3 91 38.5
MSTRG.21412 Avicennia marina HOM05D000038 ORTHO05D000143 9.9e-06 53.9 92 40.2
MSTRG.21413 Avicennia marina HOM05D000038 ORTHO05D000143 9.9e-06 53.9 92 40.2
Ciclev10017711m.g Citrus clementina HOM05D000038 ORTHO05D000143 9.9e-06 53.9 107 37.4
Duzib268G1761 Durio zibethinus HOM05D000038 ORTHO05D000143 9.9e-06 53.9 74 41.9
FvH4_7g00200 Fragaria vesca HOM05D000038 ORTHO05D000143 9.9e-06 53.9 74 40.5
FAN10G1317 Fragaria x ananassa HOM05D000038 ORTHO05D005729 9.9e-06 53.9 74 40.5
RcHm_v2.0_Chr5g0078491 Rosa chinensis HOM05D000038 ORTHO05D000143 9.9e-06 53.9 85 40.0
Sabra16G0136300 Salix brachista HOM05D000038 ORTHO05D000143 9.9e-06 53.9 83 39.8


User provided reference genes

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