Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40646 Trifolium pratense HOM05D002708 ORTHO05D003516 6.0e-15 83.2 48 100.0
Ca_15806_v3 Cicer arietinum L. HOM05D002708 ORTHO05D003516 7.4e-13 76.3 48 91.7
Glyma.07G107700 Glycine max HOM05D002708 ORTHO05D003516 1.4e-11 72.0 48 83.3
Lalb_Chr23g0268061 Lupinus albus HOM05D002708 ORTHO05D003516 1.8e-11 71.6 48 83.3
Psat5g034880 Pisum sativum HOM05D002708 ORTHO05D003516 1.8e-11 71.6 48 87.5
TPR.G40117 Trifolium pratense HOM05D002708 ORTHO05D003516 1.8e-11 71.6 48 85.4
Lj1g0008805 Lotus japonicus HOM05D002708 ORTHO05D003516 2.4e-11 71.2 48 83.3
Phvul.009G084000 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 3.1e-11 70.9 48 83.3
Phvul.009G084100 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 3.1e-11 70.9 48 83.3
Glyma.03G002400 Glycine max HOM05D002708 ORTHO05D003516 9.0e-11 69.3 48 79.2
VMungo1309G2216 Vigna mungo HOM05D002708 ORTHO05D003516 9.0e-11 69.3 48 81.2
Sabra06G0209700 Salix brachista HOM05D002708 ORTHO05D003516 2.0e-10 68.2 48 81.2
Manes.16G132500 Manihot esculenta HOM05D002708 ORTHO05D003516 3.4e-10 67.4 48 79.2
Lj1g0003503 Lotus japonicus HOM05D002708 ORTHO05D003516 5.8e-10 66.6 43 86.0
Potri.006G267500 Populus trichocarpa HOM05D002708 ORTHO05D003516 5.8e-10 66.6 48 79.2
ClCG09G010530 Citrullus lanatus HOM05D002708 ORTHO05D003516 1.3e-09 65.5 48 75.0
Dinv43573 Davidia involucrata HOM05D002708 ORTHO05D003516 1.7e-09 65.1 48 72.9
Manes.03G006600 Manihot esculenta HOM05D002708 ORTHO05D003516 1.7e-09 65.1 48 75.0
Dinv44002 Davidia involucrata HOM05D002708 ORTHO05D003516 3.8e-09 63.9 48 75.0
CSS0041941 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 4.9e-09 63.5 48 72.9
MELO3C023701.2 Cucumis melo HOM05D002708 ORTHO05D003516 4.9e-09 63.5 46 73.9
CsaV3_7G024030 Cucumis sativus L. HOM05D002708 ORTHO05D003516 4.9e-09 63.5 46 73.9
Lalb_Chr08g0244681 Lupinus albus HOM05D002708 ORTHO05D003516 6.5e-09 63.2 43 86.0
Sabra18G0018700 Salix brachista HOM05D002708 ORTHO05D003516 6.5e-09 63.2 48 75.0
GSVIVG01036012001 Vitis vinifera HOM05D002708 ORTHO05D003516 6.5e-09 63.2 48 75.0
ClCG09G010490 Citrullus lanatus HOM05D002708 ORTHO05D003516 8.4e-09 62.8 46 73.9
DCAR_029539 Daucus carota HOM05D002708 ORTHO05D003516 8.4e-09 62.8 48 70.8
Sed0010327 Sechium edule HOM05D002708 ORTHO05D003516 8.4e-09 62.8 48 75.0
Sc20g0000810 Simmondsia chinensis HOM05D002708 ORTHO05D003516 2.5e-08 61.2 46 73.9
MELO3C013234.2 Cucumis melo HOM05D002708 ORTHO05D003516 4.2e-08 60.5 46 71.7
Eucgr.J02249 Eucalyptus grandis HOM05D002708 ORTHO05D003516 4.2e-08 60.5 44 75.0
Hma1.2p1_0021F.1_g014376 Hydrangea macrophylla HOM05D002708 ORTHO05D003516 4.2e-08 60.5 48 70.8
Potri.018G015200 Populus trichocarpa HOM05D002708 ORTHO05D003516 4.2e-08 60.5 48 77.1
Medtr3g105430 Medicago truncatula HOM05D002708 ORTHO05D003516 5.5e-08 60.1 43 83.7
PSO017G2439 Papaver somniferum HOM05D002708 ORTHO05D003516 5.5e-08 60.1 48 68.8
PSO063G5514 Papaver somniferum HOM05D002708 ORTHO05D003516 5.5e-08 60.1 48 68.8
PSO782G1674 Papaver somniferum HOM05D002708 ORTHO05D003516 5.5e-08 60.1 48 68.8
Zm00001eb024200 Zea mays HOM05D002708 ORTHO05D003516 5.5e-08 60.1 48 72.9
CsaV3_7G021200 Cucumis sativus L. HOM05D002708 ORTHO05D003516 9.3e-08 59.3 46 69.6
Nitab4.5_0001476g0150 Nicotiana tabacum HOM05D002708 ORTHO05D003516 9.3e-08 59.3 48 68.8
TAR375G0643 Trochodendron aralioides HOM05D002708 ORTHO05D003516 9.3e-08 59.3 48 70.8
Haze_24936 Corylus avellana HOM05D002708 ORTHO05D003516 1.6e-07 58.5 43 74.4
Sed0015739 Sechium edule HOM05D002708 ORTHO05D003516 1.6e-07 58.5 43 76.7
ATR0693G135 Amborella trichopoda HOM05D002708 ORTHO05D003516 2.1e-07 58.2 44 72.7
Nitab4.5_0009957g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 2.1e-07 58.2 48 66.7
Nitab4.5_0012432g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 2.1e-07 58.2 48 66.7
vmacro21095 Vaccinium macrocarpon HOM05D002708 ORTHO05D003516 2.1e-07 58.2 48 72.9
Aqoxy7G03410 Aquilegia oxysepala HOM05D002708 ORTHO05D003516 2.7e-07 57.8 43 74.4
COL.COLO4_17667 Corchorus olitorius HOM05D002708 ORTHO05D003516 2.7e-07 57.8 44 72.7
Atru.chr7.2587 Acer truncatum HOM05D002708 ORTHO05D003516 3.5e-07 57.4 39 84.6
MSTRG.20407 Avicennia marina HOM05D002708 ORTHO05D003516 3.5e-07 57.4 42 73.8
CiPaw.08G004600 Carya illinoinensis HOM05D002708 ORTHO05D003516 3.5e-07 57.4 43 74.4
CAN.G1480.4 Capsicum annuum HOM05D002708 ORTHO05D003516 4.6e-07 57.0 48 64.6
Cc00_g16980 Coffea canephora HOM05D002708 ORTHO05D003516 4.6e-07 57.0 43 72.1
Prupe.6G358600 Prunus persica HOM05D002708 ORTHO05D003516 6.0e-07 56.6 43 74.4
TWI63G0006 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 7.9e-07 56.2 46 69.6
Lj9A548G53 Lonicera japonica HOM05D002708 ORTHO05D003516 1.0e-06 55.8 43 72.1
QL02p018118 Quercus lobata HOM05D002708 ORTHO05D003516 1.0e-06 55.8 43 72.1
Nn4g24628 Nelumbo nucifera HOM05D002708 ORTHO05D003516 1.3e-06 55.5 46 67.4
SalBow5G4312 Salvia bowleyana HOM05D002708 ORTHO05D003516 1.3e-06 55.5 43 67.4
Oeu002888.1 Olea europaea HOM05D002708 ORTHO05D003516 1.8e-06 55.1 43 69.8
Cfa013020 Carpinus fangiana HOM05D002708 ORTHO05D003516 2.3e-06 54.7 43 67.4
PGR031G2892 Punica granatum HOM05D002708 ORTHO05D003516 2.3e-06 54.7 40 77.5
Actinidia21606 Actinidia chinensis HOM05D002708 ORTHO05D003516 3.0e-06 54.3 43 69.8
Oeu037396.1 Olea europaea HOM05D002708 ORTHO05D003516 3.0e-06 54.3 43 69.8
Hund22205 Selenicereus undatus HOM05D002708 ORTHO05D003516 3.0e-06 54.3 46 63.0
PGSC0003DMG400001674 Solanum tuberosum HOM05D002708 ORTHO05D003516 3.0e-06 54.3 48 62.5
Actinidia33292 Actinidia chinensis HOM05D002708 ORTHO05D003516 3.9e-06 53.9 43 69.8
Cfa002667 Carpinus fangiana HOM05D002708 ORTHO05D003516 3.9e-06 53.9 43 69.8
Gohir.D12G045200 Gossypium hirsutum HOM05D002708 ORTHO05D003516 3.9e-06 53.9 43 72.1
Gorai.008G047600 Gossypium raimondii HOM05D002708 ORTHO05D003516 3.9e-06 53.9 43 72.1
arahy.Tifrunner.gnm1.ann1.V30RJW Arachis hypogaea HOM05D002708 ORTHO05D003516 5.1e-06 53.5 44 63.6
TWI32G0606 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 5.1e-06 53.5 48 64.6
unitig_0.g1327 Utricularia gibba HOM05D002708 ORTHO05D003516 5.1e-06 53.5 43 69.8
HPP92_028478 Vanilla planifolia HOM05D002708 ORTHO05D003516 5.1e-06 53.5 48 68.8
CDE12G0538 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 6.7e-06 53.1 43 67.4
MBI19_g28098_MAGBIO Magnolia biondii HOM05D002708 ORTHO05D003516 6.7e-06 53.1 39 76.9
Ciclev10007609m.g Citrus clementina HOM05D002708 ORTHO05D003516 8.7e-06 52.8 39 76.9
Nn3g18494 Nelumbo nucifera HOM05D002708 ORTHO05D003516 8.7e-06 52.8 48 66.7
Peaxi162Scf01124g00123 Petunia axillaris HOM05D002708 ORTHO05D003516 8.7e-06 52.8 46 60.9


User provided reference genes

Program Settings