Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4060 Trifolium pratense HOM05D001935 ORTHO05D010109 2.6e-81 305.4 170 100.0
Medtr7g109420 Medicago truncatula HOM05D001935 ORTHO05D010109 4.9e-59 231.5 171 75.4
Psat3g020520 Pisum sativum HOM05D001935 ORTHO05D010109 3.5e-57 225.3 170 74.7
Ca_09205_v3 Cicer arietinum L. HOM05D001935 ORTHO05D010109 6.4e-43 177.9 176 59.1
Lj1g0023097 Lotus japonicus HOM05D001935 ORTHO05D010109 5.2e-37 158.3 180 56.7
Glyma.03G218900 Glycine max HOM05D001935 ORTHO05D010109 2.1e-33 146.4 181 51.4
Glyma.19G215700 Glycine max HOM05D001935 ORTHO05D010109 1.1e-29 134.0 168 53.0
VMungo1383G2590 Vigna mungo HOM05D001935 ORTHO05D010109 2.0e-28 129.8 178 47.2
Phvul.001G212300 Phaseolus vulgaris HOM05D001935 ORTHO05D010109 8.4e-27 124.4 180 48.9
Cpa.g.sc18.27 Carica papaya HOM05D001935 ORTHO05D010109 3.2e-26 122.5 182 44.0
Thecc.01G311900 Theobroma cacao HOM05D001935 ORTHO05D010109 8.1e-22 107.8 171 38.0
TWI36G1013 Tripterygium wilfordii HOM05D001935 ORTHO05D010109 8.1e-22 107.8 176 44.9
TAR633G2657 Trochodendron aralioides HOM05D001935 ORTHO05D010109 8.1e-22 107.8 144 42.4
Haze_05029 Corylus avellana HOM05D001935 ORTHO05D010109 1.5e-20 103.6 153 39.9
Duzib138G0891 Durio zibethinus HOM05D001935 ORTHO05D010109 7.6e-20 101.3 173 34.7
Cfa005813 Carpinus fangiana HOM05D001935 ORTHO05D010109 1.3e-19 100.5 154 39.0
COL.COLO4_23245 Corchorus olitorius HOM05D001935 ORTHO05D010109 2.2e-19 99.8 172 36.6
TAR362G0690 Trochodendron aralioides HOM05D001136 ORTHO05D010109 2.9e-19 99.4 145 39.3
QL12p020164 Quercus lobata HOM05D001935 ORTHO05D010109 4.9e-19 98.6 154 37.7
Manes.01G226900 Manihot esculenta HOM05D001935 ORTHO05D010109 2.4e-18 96.3 148 39.2
Actinidia21004 Actinidia chinensis HOM05D001136 ORTHO05D001144 7.1e-18 94.7 143 38.5
Potri.006G105500 Populus trichocarpa HOM05D001935 ORTHO05D010109 2.7e-17 92.8 178 36.5
Gorai.008G140400 Gossypium raimondii HOM05D001935 ORTHO05D010109 3.5e-17 92.4 174 33.9
CiPaw.07G116400 Carya illinoinensis HOM05D001935 ORTHO05D010109 4.6e-17 92.0 159 37.7
Gohir.D07G132400 Gossypium hirsutum HOM05D001935 ORTHO05D010109 4.6e-17 92.0 161 34.2
Gohir.D12G129300 Gossypium hirsutum HOM05D001935 ORTHO05D010109 4.6e-17 92.0 176 34.1
Gorai.001G143800 Gossypium raimondii HOM05D001935 ORTHO05D010109 4.6e-17 92.0 161 34.2
CiPaw.08G090700 Carya illinoinensis HOM05D001935 ORTHO05D010109 6.0e-17 91.7 140 40.0
MBI19_g24818_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 6.0e-17 91.7 87 55.2
Eucgr.H01053 Eucalyptus grandis HOM05D001935 ORTHO05D010109 7.8e-17 91.3 157 33.8
Gohir.A07G128000 Gossypium hirsutum HOM05D001935 ORTHO05D010109 1.0e-16 90.9 161 34.2
MBI18_g28444_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 1.0e-16 90.9 82 52.4
Potri.006G105600 Populus trichocarpa HOM05D001935 ORTHO05D010109 1.0e-16 90.9 178 36.0
Hma1.2p1_0486F.1_g163095 Hydrangea macrophylla HOM05D001935 ORTHO05D010109 1.7e-16 90.1 169 34.3
Hma1.2p1_0486F.1_g163120 Hydrangea macrophylla HOM05D001935 ORTHO05D010109 1.7e-16 90.1 169 34.3
MELO3C015930.2 Cucumis melo HOM05D001935 ORTHO05D010109 2.3e-16 89.7 150 41.3
Sed0028026 Sechium edule HOM05D001935 ORTHO05D010109 2.3e-16 89.7 146 37.0
EL10As5g23516 Beta vulgaris HOM05D001935 ORTHO05D010109 3.0e-16 89.4 181 34.8
Gohir.A12G125800 Gossypium hirsutum HOM05D001935 ORTHO05D010109 3.0e-16 89.4 176 33.0
Sabra06G0082000 Salix brachista HOM05D001935 ORTHO05D010109 5.1e-16 88.6 155 38.7
Dinv10084 Davidia involucrata HOM05D001935 ORTHO05D010109 6.6e-16 88.2 95 47.4
Dinv10085 Davidia involucrata HOM05D001935 ORTHO05D010109 6.6e-16 88.2 76 53.9
CSS0010042 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D010109 1.1e-15 87.4 120 42.5
CSS0012652 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D010109 1.1e-15 87.4 120 42.5
Atru.chr5.1021 Acer truncatum HOM05D001935 ORTHO05D010109 1.5e-15 87.0 156 35.9
CSS0036092 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D010109 1.9e-15 86.7 144 36.8
EL10As5g23517 Beta vulgaris HOM05D001935 ORTHO05D010109 2.5e-15 86.3 173 36.4
SalBow3G1122 Salvia bowleyana HOM05D001935 ORTHO05D010109 3.3e-15 85.9 155 36.1
Aqoxy2G01830 Aquilegia oxysepala HOM05D001935 ORTHO05D010109 5.6e-15 85.1 152 34.2
Rhsim13G0005200 Rhododendron simsii HOM05D001935 ORTHO05D010109 5.6e-15 85.1 156 35.3
Potri.016G128800 Populus trichocarpa HOM05D001935 ORTHO05D010109 7.3e-15 84.7 185 33.5
Sabra16G0129700 Salix brachista HOM05D001935 ORTHO05D010109 9.6e-15 84.3 178 34.8
Ah.02g112210 Amaranthus hybridus HOM05D001935 ORTHO05D010109 1.3e-14 84.0 161 34.8
Atru.chr5.1024 Acer truncatum HOM05D001935 ORTHO05D010109 1.6e-14 83.6 112 43.8
Oeu038015.2 Olea europaea HOM05D001935 ORTHO05D010109 2.8e-14 82.8 143 37.1
Sed0011579 Sechium edule HOM05D001935 ORTHO05D010109 8.1e-14 81.3 147 37.4
ATR0706G209 Amborella trichopoda HOM05D001935 ORTHO05D010109 1.4e-13 80.5 174 32.2
Gorai.007G123300 Gossypium raimondii HOM05D001935 ORTHO05D010109 1.4e-13 80.5 155 34.2
GSVIVG01028106001 Vitis vinifera HOM05D001935 ORTHO05D010109 1.4e-13 80.5 87 48.3
Gohir.D11G115100 Gossypium hirsutum HOM05D001935 ORTHO05D010109 1.8e-13 80.1 155 32.9
CsaV3_7G029910 Cucumis sativus L. HOM05D001935 ORTHO05D010109 2.4e-13 79.7 74 58.1
ClCG09G005160 Citrullus lanatus HOM05D001935 ORTHO05D010109 3.1e-13 79.3 78 53.8
AUR62011822 Chenopodium quinoa HOM05D001935 ORTHO05D010109 4.0e-13 79.0 156 35.3
Gohir.A11G109500 Gossypium hirsutum HOM05D001935 ORTHO05D010109 6.9e-13 78.2 108 38.9
PGR044G2318 Punica granatum HOM05D001935 ORTHO05D010109 1.2e-12 77.4 160 31.9
AUR62024666 Chenopodium quinoa HOM05D001935 ORTHO05D010109 1.5e-12 77.0 157 33.1
Rhsim13G0005300 Rhododendron simsii HOM05D001935 ORTHO05D010109 2.6e-12 76.3 143 35.7
DCAR_005768 Daucus carota HOM05D001935 ORTHO05D010109 4.5e-12 75.5 122 37.7
Ah.11g049310 Amaranthus hybridus HOM05D001935 ORTHO05D010109 9.9e-12 74.3 176 33.0
Ciclev10022487m.g Citrus clementina HOM05D001935 ORTHO05D010109 1.7e-11 73.6 84 44.0
Rhsim04G0219100 Rhododendron simsii HOM05D003369 ORTHO05D004089 1.2e-09 67.4 74 43.2
SGA_v2.0_scaffold376G50276 Striga asiatica HOM05D001935 ORTHO05D010109 1.2e-09 67.4 142 33.8
Os01g0304400 Oryza sativa ssp. japonica HOM05D001935 ORTHO05D010109 3.5e-09 65.9 129 34.1
Sed0010378 Sechium edule HOM05D001935 ORTHO05D001700 4.6e-09 65.5 84 42.9
Rhsim03G0153200 Rhododendron simsii HOM05D003369 ORTHO05D004089 1.8e-08 63.5 74 41.9
Dinv12075 Davidia involucrata HOM05D001935 ORTHO05D010109 2.3e-08 63.2 64 45.3
AUR62024667 Chenopodium quinoa HOM05D001935 ORTHO05D010109 3.0e-08 62.8 140 30.7
unitig_0.g277 Utricularia gibba HOM05D001935 ORTHO05D010109 3.9e-08 62.4 152 32.9
HanXRQChr17g0567051 Helianthus annuus HOM05D001935 ORTHO05D001700 5.1e-08 62.0 129 31.8
EL10Ac5g10513 Beta vulgaris HOM05D001935 ORTHO05D010109 6.7e-08 61.6 111 38.7
Zm00001eb340260 Zea mays HOM05D001935 ORTHO05D010109 2.5e-07 59.7 122 32.8
Sed0026428 Sechium edule HOM05D001935 ORTHO05D001700 4.3e-07 58.9 125 30.4
ClCG01G006190 Citrullus lanatus HOM05D001935 ORTHO05D001700 5.6e-07 58.5 69 43.5
MELO3C005308.2 Cucumis melo HOM05D001935 ORTHO05D001700 5.6e-07 58.5 84 40.5
CsaV3_5G028470 Cucumis sativus L. HOM05D001935 ORTHO05D001700 5.6e-07 58.5 84 40.5
Sabra08G0096000 Salix brachista HOM05D001935 ORTHO05D001700 5.6e-07 58.5 78 41.0
HanXRQChr07g0189891 Helianthus annuus HOM05D001935 ORTHO05D001700 7.4e-07 58.2 98 32.7
Zm00001eb156470 Zea mays HOM05D001935 ORTHO05D001700 7.4e-07 58.2 69 40.6
Zm00001eb440490 Zea mays HOM05D001935 ORTHO05D001700 7.4e-07 58.2 69 40.6
ECA247G2557 Erigeron canadensis HOM05D006641 ORTHO05D007573 1.3e-06 57.4 77 44.2
Potri.010G116000 Populus trichocarpa HOM05D001935 ORTHO05D001700 1.3e-06 57.4 78 38.5
Thecc.02G277900 Theobroma cacao HOM05D001935 ORTHO05D001700 1.3e-06 57.4 84 40.5
Peaxi162Scf00119g00143 Petunia axillaris HOM05D001935 ORTHO05D001700 1.6e-06 57.0 100 38.0
Prupe.3G150600 Prunus persica HOM05D001935 ORTHO05D001700 1.6e-06 57.0 80 35.0
SGA_v2.0_scaffold49G18130 Striga asiatica HOM05D001935 ORTHO05D001700 1.6e-06 57.0 84 35.7
Gohir.D05G318900 Gossypium hirsutum HOM05D001935 ORTHO05D001700 2.1e-06 56.6 84 39.3
Gorai.009G341800 Gossypium raimondii HOM05D001935 ORTHO05D001700 2.1e-06 56.6 84 39.3
QL01p002600 Quercus lobata HOM05D001935 ORTHO05D001700 2.1e-06 56.6 84 39.3
Duzib251G0665 Durio zibethinus HOM05D001935 ORTHO05D001700 2.8e-06 56.2 84 39.3
Nitab4.5_0000414g0010 Nicotiana tabacum HOM05D001935 ORTHO05D001700 2.8e-06 56.2 100 37.0
Potri.008G127200 Populus trichocarpa HOM05D001935 ORTHO05D001700 2.8e-06 56.2 84 39.3
Atru.chr1.1571 Acer truncatum HOM05D001935 ORTHO05D001700 3.7e-06 55.8 70 40.0
CSS0049402 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D001700 3.7e-06 55.8 95 35.8
Migut.E00401 Erythranthe guttata HOM05D001935 ORTHO05D001700 3.7e-06 55.8 95 33.7
MBI10_g41075_MAGBIO Magnolia biondii HOM05D001935 ORTHO05D001700 3.7e-06 55.8 68 44.1
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 3.7e-06 55.8 114 31.6
MSTRG.2193 Avicennia marina HOM05D001935 ORTHO05D001700 4.8e-06 55.5 95 34.7
HanXRQChr15g0477371 Helianthus annuus HOM05D001935 ORTHO05D001700 4.8e-06 55.5 78 37.2
Nitab4.5_0001648g0030 Nicotiana tabacum HOM05D001935 ORTHO05D001700 4.8e-06 55.5 150 30.7
Psat1g052120 Pisum sativum HOM05D001935 ORTHO05D001700 4.8e-06 55.5 132 27.3
Solyc04g007580.1 Solanum lycopersicum HOM05D001935 ORTHO05D001700 4.8e-06 55.5 100 36.0
Sopen04g002660 Solanum pennellii HOM05D001935 ORTHO05D001700 4.8e-06 55.5 100 36.0
PGSC0003DMG400005992 Solanum tuberosum HOM05D001935 ORTHO05D001700 4.8e-06 55.5 100 36.0
CiPaw.05G246800 Carya illinoinensis HOM05D001935 ORTHO05D001700 6.2e-06 55.1 76 39.5
CiPaw.06G014100 Carya illinoinensis HOM05D001935 ORTHO05D001700 6.2e-06 55.1 79 38.0
Manes.06G062400 Manihot esculenta HOM05D001935 ORTHO05D001700 6.2e-06 55.1 109 33.9
Oeu044325.1 Olea europaea HOM05D001935 ORTHO05D001700 6.2e-06 55.1 78 37.2
Os01g0686000 Oryza sativa ssp. japonica HOM05D001935 ORTHO05D001700 6.2e-06 55.1 69 40.6
Zm00001eb439660 Zea mays HOM05D001935 ORTHO05D001700 6.2e-06 55.1 58 46.6
AUR62023214 Chenopodium quinoa HOM05D001935 ORTHO05D001700 8.1e-06 54.7 72 38.9
AUR62023260 Chenopodium quinoa HOM05D001935 ORTHO05D001700 8.1e-06 54.7 72 38.9
Dinv16185 Davidia involucrata HOM05D001935 ORTHO05D001700 8.1e-06 54.7 96 34.4
Lj6P749T50 Lonicera japonica HOM05D001935 ORTHO05D001700 8.1e-06 54.7 78 38.5


User provided reference genes

Program Settings