Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 2.2e-70 268.9 139 100.0
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 2.2e-62 242.3 139 93.5
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 1.2e-60 236.5 124 99.2
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 1.2e-60 236.5 124 99.2
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 1.2e-60 236.5 124 99.2
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 1.2e-60 236.5 124 99.2
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 1.0e-59 233.4 124 98.4
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 1.4e-59 233.0 124 97.6
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 1.4e-59 233.0 124 97.6
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 1.4e-59 233.0 124 97.6
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 1.4e-59 233.0 124 97.6
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 1.8e-59 232.6 125 97.6
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 1.8e-59 232.6 124 97.6
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 1.8e-59 232.6 124 97.6
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 1.8e-59 232.6 124 97.6
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 3.0e-59 231.9 124 97.6
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 5.2e-59 231.1 124 96.8
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 5.2e-59 231.1 124 96.8
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 5.2e-59 231.1 124 96.8
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 5.2e-59 231.1 124 96.8
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 5.2e-59 231.1 124 96.8
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 5.2e-59 231.1 124 96.8
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 5.2e-59 231.1 124 97.6
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 2.0e-58 229.2 124 96.0
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 2.0e-58 229.2 124 96.0
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 2.6e-58 228.8 124 96.0
arahy.Tifrunner.gnm1.ann1.N584HR Arachis hypogaea HOM05D003517 ORTHO05D009794 7.5e-58 227.3 124 95.2
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 7.5e-58 227.3 124 95.2
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 9.8e-58 226.9 124 96.0
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 1.7e-57 226.1 124 94.4
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 8.3e-57 223.8 124 94.4
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 8.3e-57 223.8 124 94.4
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 8.3e-57 223.8 134 89.6
HanXRQChr09g0237761 Helianthus annuus HOM05D003517 ORTHO05D009794 1.1e-56 223.4 124 93.5
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 1.4e-56 223.0 125 93.6
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 1.4e-56 223.0 125 93.6
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 1.4e-56 223.0 125 93.6
RhsimMtG0007100 Rhododendron simsii HOM05D003517 ORTHO05D009794 3.1e-56 221.9 124 94.4
HanXRQChr01g0013411 Helianthus annuus HOM05D003517 ORTHO05D009794 4.1e-56 221.5 124 93.5
Lj2P1233T102 Lonicera japonica HOM05D003517 ORTHO05D009794 4.1e-56 221.5 124 93.5
Lj2P1236T75 Lonicera japonica HOM05D003517 ORTHO05D009794 4.1e-56 221.5 124 93.5
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 4.1e-56 221.5 125 92.8
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 4.1e-56 221.5 124 93.5
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 6.6e-54 214.2 125 89.6
DCAR_032460 Daucus carota HOM05D003517 ORTHO05D009794 8.6e-54 213.8 124 91.1
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 7.2e-53 210.7 124 91.1
MBI05_g05356_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009794 2.8e-52 208.8 116 93.1
Nitab4.5_0000172g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009794 6.1e-52 207.6 125 86.4
HanXRQChr05g0138851 Helianthus annuus HOM05D003517 ORTHO05D009794 1.4e-51 206.5 118 90.7
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.0e-50 202.6 125 85.6
Gohir.A08G086024 Gossypium hirsutum HOM05D003517 ORTHO05D009794 5.7e-50 201.1 124 85.5
HanXRQChr02g0049481 Helianthus annuus HOM05D003517 ORTHO05D009794 7.5e-50 200.7 109 93.6
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.2e-49 199.1 124 86.3
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 4.9e-49 198.0 124 83.9
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 8.3e-49 197.2 125 84.0
Nitab4.5_0001152g0960 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.7e-47 192.2 125 81.6
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 7.8e-47 190.7 103 97.1
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 2.5e-45 185.7 98 100.0
Nitab4.5_0003945g0090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.6e-42 175.6 124 78.2
Aa31csc798G10 Aethionema arabicum HOM05D003517 ORTHO05D009794 9.2e-40 167.2 109 83.5
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 1.7e-38 162.9 88 98.9
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 1.9e-37 159.5 96 91.7
Pp3c12_12240 Physcomitrium patens HOM05D003517 ORTHO05D009794 8.9e-35 150.6 124 67.7
SabraMtG0003300 Salix brachista HOM05D003517 ORTHO05D009794 1.2e-34 150.2 80 95.0
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 9.8e-34 147.1 91 89.0
CDE02G3221 Ceratophyllum demersum HOM05D003517 ORTHO05D009794 2.2e-33 146.0 79 93.7
Sp5g20260 Schrenkiella parvula HOM05D003517 ORTHO05D009794 8.6e-30 134.0 124 66.1
unitig_0.g2040 Utricularia gibba HOM05D003517 ORTHO05D009794 2.1e-28 129.4 75 88.0
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.5e-26 123.2 79 86.1
Solyc10g045730.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 7.8e-23 110.9 125 57.6
Psat0s1454g0040 Pisum sativum HOM05D003517 ORTHO05D009794 2.5e-21 105.9 98 66.3
Lj2P92T86 Lonicera japonica HOM05D003517 ORTHO05D009794 4.3e-21 105.1 55 92.7
Nitab4.5_0001152g0550 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.1e-19 100.5 54 88.9
Solyc11g030930.3 Solanum lycopersicum HOM05D003517 ORTHO05D009794 1.1e-19 100.5 61 83.6
Aqoxy12s041 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 1.8e-19 99.8 71 83.1
HanXRQChr05g0138841 Helianthus annuus HOM05D003517 ORTHO05D009794 1.7e-17 93.2 58 86.2
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 3.8e-17 92.0 50 84.0
Nitab4.5_0001152g0290 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.1e-16 90.5 64 78.1
SGA_v2.0_scaffold400G50848 Striga asiatica HOM05D003517 ORTHO05D009794 1.6e-15 86.7 49 91.8
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 1.9e-13 79.7 44 95.5
HanXRQChr05g0138831 Helianthus annuus HOM05D003517 ORTHO05D009794 6.9e-11 71.2 37 91.9
HanXRQChr05g0138811 Helianthus annuus HOM05D003517 ORTHO05D009794 5.8e-10 68.2 37 89.2
HanXRQChr05g0138821 Helianthus annuus HOM05D003517 ORTHO05D009794 5.8e-10 68.2 37 89.2
AT2G07718 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 1.7e-09 66.6 36 94.4
ATMG00590 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 1.7e-09 66.6 36 94.4
CARHR282960 Cardamine hirsuta HOM05D014754 ORTHO05D017434 1.7e-09 66.6 36 94.4
Lj2C1230G62 Lonicera japonica HOM05D014754 ORTHO05D009794 6.4e-09 64.7 40 85.0
CDE02G0177 Ceratophyllum demersum HOM05D003517 ORTHO05D130237 6.6e-06 54.7 118 29.7


User provided reference genes

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