Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 7.5e-75 283.9 154 100.0
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 1.9e-70 269.2 154 96.1
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 4.7e-69 264.6 154 94.2
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 2.6e-67 258.8 154 92.2
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 1.2e-61 240.0 152 85.5
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 9.8e-59 230.3 155 81.3
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 3.7e-58 228.4 154 81.8
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 2.4e-57 225.7 154 80.5
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 5.4e-57 224.6 157 79.0
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 9.2e-57 223.8 141 83.7
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.3e-55 219.9 155 78.7
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.3e-55 219.9 155 78.7
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 1.3e-55 219.9 155 78.7
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 2.5e-54 215.7 153 76.5
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 3.3e-54 215.3 156 76.3
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 5.6e-54 214.5 158 76.6
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 1.2e-53 213.4 140 77.9
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 1.2e-53 213.4 155 73.5
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 1.6e-53 213.0 141 78.0
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 4.7e-53 211.5 155 74.2
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 6.1e-53 211.1 141 76.6
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 1.4e-52 209.9 141 77.3
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 1.8e-52 209.5 150 74.0
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 2.3e-52 209.1 153 73.2
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 2.3e-52 209.1 152 74.3
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 2.3e-52 209.1 140 75.0
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 3.1e-52 208.8 141 75.2
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.1e-52 208.8 140 75.0
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 3.1e-52 208.8 140 75.0
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 4.0e-52 208.4 140 74.3
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 4.0e-52 208.4 159 73.0
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 6.8e-52 207.6 154 73.4
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 6.8e-52 207.6 143 76.2
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.9e-52 207.2 140 73.6
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.9e-52 207.2 140 73.6
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 8.9e-52 207.2 155 71.6
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 8.9e-52 207.2 145 74.5
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 1.2e-51 206.8 144 75.0
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 1.5e-51 206.5 152 73.0
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 1.5e-51 206.5 144 76.4
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.5e-51 206.5 159 71.7
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.0e-51 206.1 158 73.4
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 2.0e-51 206.1 143 75.5
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 2.0e-51 206.1 143 75.5
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 2.6e-51 205.7 143 75.5
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.6e-51 205.7 144 75.7
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.4e-51 204.9 140 72.1
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.4e-51 204.9 140 71.4
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.4e-51 204.9 140 72.1
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 7.5e-51 204.1 158 72.8
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 7.5e-51 204.1 158 69.6
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 7.5e-51 204.1 158 72.2
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 9.8e-51 203.8 141 74.5
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 9.8e-51 203.8 158 72.2
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 9.8e-51 203.8 151 73.5
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 1.7e-50 203.0 154 74.0
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 1.7e-50 203.0 141 74.5
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.7e-50 203.0 140 72.1
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 2.9e-50 202.2 141 73.8
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 2.9e-50 202.2 138 76.1
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 3.7e-50 201.8 158 71.5
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 4.9e-50 201.4 152 70.4
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 6.4e-50 201.1 141 73.0
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 8.3e-50 200.7 153 69.9
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 8.3e-50 200.7 141 75.2
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 8.3e-50 200.7 141 75.2
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 1.1e-49 200.3 153 69.9
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 1.1e-49 200.3 141 74.5
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.1e-49 200.3 141 72.3
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 1.4e-49 199.9 161 66.5
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.9e-49 199.5 153 69.9
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 2.4e-49 199.1 153 69.9
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 2.4e-49 199.1 158 69.6
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 4.1e-49 198.4 151 72.2
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 9.2e-49 197.2 144 74.3
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 9.2e-49 197.2 139 74.8
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 1.6e-48 196.4 187 62.0
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 2.0e-48 196.1 153 68.6
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 2.7e-48 195.7 141 71.6
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 3.5e-48 195.3 141 71.6
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 4.6e-48 194.9 137 73.0
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 4.6e-48 194.9 148 67.6
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 1.3e-47 193.4 139 71.9
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 1.3e-47 193.4 137 73.0
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 2.3e-47 192.6 153 67.3
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 2.3e-47 192.6 153 67.3
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 5.0e-47 191.4 152 67.1
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 6.6e-47 191.0 153 66.7
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 8.6e-47 190.7 153 67.3
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 1.1e-46 190.3 153 66.7
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 1.1e-46 190.3 153 66.7
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 1.1e-46 190.3 153 66.7
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 1.1e-46 190.3 153 66.7
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.9e-46 189.5 140 70.0
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 3.3e-46 188.7 153 66.0
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.3e-46 188.7 140 69.3
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 4.3e-46 188.3 141 68.8
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 4.3e-46 188.3 135 71.1
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 2.1e-45 186.0 192 55.7
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.7e-45 184.9 140 68.6
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 1.4e-44 183.3 203 54.7
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 1.5e-43 179.9 163 61.3
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 2.6e-43 179.1 139 69.8
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 3.4e-43 178.7 138 70.3
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 1.7e-42 176.4 114 77.2
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 1.7e-42 176.4 114 77.2
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 1.7e-42 176.4 180 55.6
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 2.2e-42 176.0 127 75.6
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 2.9e-42 175.6 114 77.2
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 3.7e-42 175.3 114 77.2
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 6.4e-42 174.5 164 59.8
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 8.3e-42 174.1 123 73.2
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 1.1e-41 173.7 221 48.4
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 1.1e-41 173.7 222 49.5
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 1.4e-41 173.3 114 75.4
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 1.9e-41 172.9 131 71.8
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 1.9e-41 172.9 114 75.4
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 4.1e-41 171.8 114 75.4
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 5.4e-41 171.4 114 75.4
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 9.2e-41 170.6 113 77.0
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 1.2e-40 170.2 129 72.1
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.2e-40 170.2 134 67.9
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 1.6e-40 169.9 117 73.5
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.7e-40 169.1 113 74.3
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 2.7e-40 169.1 143 65.0
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 1.7e-39 166.4 128 71.9
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 1.7e-39 166.4 245 47.3
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 5.1e-39 164.9 131 67.9
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 8.6e-39 164.1 152 56.6
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 1.1e-38 163.7 152 55.3
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 5.6e-38 161.4 138 59.4
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 7.3e-38 161.0 116 71.6
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 4.7e-37 158.3 141 54.6
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 6.8e-36 154.5 140 55.0
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.0e-35 152.9 122 68.0
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.0e-35 152.9 122 68.0
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 1.3e-31 140.2 150 54.0
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 1.3e-26 123.6 100 68.0
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 1.4e-25 120.2 87 71.3
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 1.4e-25 120.2 200 42.0
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 4.2e-25 118.6 90 68.9
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 1.6e-24 116.7 95 67.4
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 2.1e-24 116.3 84 63.1
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 7.8e-24 114.4 146 41.1
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 3.3e-22 109.0 136 50.7
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 2.1e-21 106.3 142 39.4
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 1.5e-19 100.1 77 59.7
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-19 100.1 70 75.7
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-19 100.1 70 75.7
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 9.9e-19 97.4 70 72.9
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.1e-17 94.0 70 68.6
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 1.2e-16 90.5 64 76.6
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 7.9e-16 87.8 57 75.4
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.0e-15 87.4 57 75.4
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 1.3e-15 87.0 142 33.8
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.5e-14 82.8 64 68.8
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 4.3e-14 82.0 56 69.6
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 4.8e-13 78.6 48 77.1
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 9.0e-12 74.3 139 30.2
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 7.6e-11 71.2 60 65.0
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 2.2e-10 69.7 72 58.3
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 4.9e-10 68.6 60 63.3
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 9.3e-09 64.3 61 62.3
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 9.3e-09 64.3 61 62.3
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.2e-08 63.9 50 58.0


User provided reference genes

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