Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40565 Trifolium pratense HOM05D000009 ORTHO05D000008 3.2e-96 355.5 247 100.0
TPR.G23172 Trifolium pratense HOM05D000009 ORTHO05D000008 3.4e-61 239.2 158 77.2
TPR.G39369 Trifolium pratense HOM05D000009 ORTHO05D024723 2.0e-53 213.4 248 52.0
TPR.G11469 Trifolium pratense HOM05D000009 ORTHO05D024723 1.1e-48 197.6 118 84.7
TPR.G13493 Trifolium pratense HOM05D000009 ORTHO05D000008 2.0e-45 186.8 244 66.8
Medtr5g037450 Medicago truncatula HOM05D000009 ORTHO05D000008 1.6e-39 167.2 245 66.1
Medtr5g035530 Medicago truncatula HOM05D000009 ORTHO05D000008 2.6e-37 159.8 245 63.7
TPR.G13507 Trifolium pratense HOM05D000009 ORTHO05D000008 9.9e-37 157.9 245 65.3
Medtr5g035280 Medicago truncatula HOM05D000009 ORTHO05D000008 1.9e-35 153.7 240 63.8
Lj2g0005356 Lotus japonicus HOM05D000009 ORTHO05D000008 4.3e-32 142.5 245 55.1
TPR.G13508 Trifolium pratense HOM05D000009 ORTHO05D000008 2.0e-29 133.7 240 53.8
TPR.G39213 Trifolium pratense HOM05D000009 ORTHO05D000008 2.9e-28 129.8 242 59.5
Lj2g0013050 Lotus japonicus HOM05D000009 ORTHO05D000008 3.8e-28 129.4 241 61.0
Medtr3g026660 Medicago truncatula HOM05D000009 ORTHO05D000008 7.1e-27 125.2 240 59.2
Psat2g111520 Pisum sativum HOM05D000009 ORTHO05D000008 9.3e-19 98.2 122 47.5
Psat2g111800 Pisum sativum HOM05D000009 ORTHO05D000008 9.3e-19 98.2 124 48.4
Psat2g111840 Pisum sativum HOM05D000009 ORTHO05D000008 1.2e-18 97.8 122 47.5
Medtr5g040770 Medicago truncatula HOM05D000009 ORTHO05D000008 2.3e-17 93.6 222 58.6
TPR.G13496 Trifolium pratense HOM05D000009 ORTHO05D000008 2.3e-17 93.6 240 46.2
Medtr5g037500 Medicago truncatula HOM05D000009 ORTHO05D000008 3.0e-17 93.2 241 55.2
Medtr5g071780 Medicago truncatula HOM05D000009 ORTHO05D000008 3.9e-17 92.8 144 46.5
TPR.G4375 Trifolium pratense HOM05D000009 ORTHO05D000008 3.9e-17 92.8 78 59.0
Ca_04628_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 6.7e-17 92.0 78 60.3
Medtr5g071220 Medicago truncatula HOM05D000009 ORTHO05D000008 8.7e-17 91.7 144 45.1
Medtr5g071823 Medicago truncatula HOM05D000009 ORTHO05D000008 1.1e-16 91.3 144 42.4
Medtr5g071850 Medicago truncatula HOM05D000009 ORTHO05D000008 1.1e-16 91.3 144 42.4
Medtr5g072140 Medicago truncatula HOM05D000009 ORTHO05D000008 1.9e-16 90.5 142 44.4
Medtr5g035200 Medicago truncatula HOM05D000009 ORTHO05D000008 3.3e-16 89.7 80 56.2
Medtr5g035480 Medicago truncatula HOM05D000009 ORTHO05D000008 3.3e-16 89.7 242 52.9
Medtr5g035240 Medicago truncatula HOM05D000009 ORTHO05D000008 4.3e-16 89.4 86 54.7
Medtr4g126000 Medicago truncatula HOM05D000009 ORTHO05D000008 7.4e-16 88.6 145 43.4
PGSC0003DMG400008588 Solanum tuberosum HOM05D000009 ORTHO05D000008 6.3e-15 85.5 243 54.3
Psat2g111600 Pisum sativum HOM05D000009 ORTHO05D016330 8.2e-15 85.1 89 52.8
Rhsim05G0016700 Rhododendron simsii HOM05D000009 ORTHO05D000008 1.1e-14 84.7 124 41.9
Psat2g110240 Pisum sativum HOM05D000009 ORTHO05D000008 1.8e-14 84.0 80 53.8
TPR.G5112 Trifolium pratense HOM05D000009 ORTHO05D000008 2.4e-14 83.6 145 42.1
CSS0029174 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 5.3e-14 82.4 111 42.3
Medtr4g055630 Medicago truncatula HOM05D000009 ORTHO05D000008 5.3e-14 82.4 116 46.6
TPR.G4410 Trifolium pratense HOM05D000009 ORTHO05D000008 5.3e-14 82.4 80 55.0
TPR.G24032 Trifolium pratense HOM05D000009 ORTHO05D000008 6.9e-14 82.0 142 43.0
TPR.G4412 Trifolium pratense HOM05D000009 ORTHO05D000008 6.9e-14 82.0 78 56.4
TPR.G34427 Trifolium pratense HOM05D000009 ORTHO05D012364 1.2e-13 81.3 139 43.2
Medtr5g037460 Medicago truncatula HOM05D000009 ORTHO05D000008 1.5e-13 80.9 207 31.9
TPR.G29203 Trifolium pratense HOM05D000009 ORTHO05D000008 1.5e-13 80.9 144 43.1
TPR.G24040 Trifolium pratense HOM05D000009 ORTHO05D000008 2.6e-13 80.1 146 43.2
TPR.G15797 Trifolium pratense HOM05D000009 ORTHO05D000008 3.4e-13 79.7 160 40.6
TPR.G20861 Trifolium pratense HOM05D000009 ORTHO05D000008 4.5e-13 79.3 140 42.9
Medtr0144s0010 Medicago truncatula HOM05D000009 ORTHO05D000008 5.9e-13 79.0 260 38.1
Ca_05627_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 1.3e-12 77.8 144 39.6
TPR.G10597 Trifolium pratense HOM05D000009 ORTHO05D000008 1.7e-12 77.4 145 42.8
TPR.G23709 Trifolium pratense HOM05D000009 ORTHO05D012364 1.7e-12 77.4 128 43.8
CSS0043086 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 2.9e-12 76.6 113 41.6
CANSAT64G0522 Cannabis sativa HOM05D000009 ORTHO05D000008 2.9e-12 76.6 160 35.6
Thecc.01G403600 Theobroma cacao HOM05D000009 ORTHO05D000008 3.8e-12 76.3 248 48.8
Medtr5g070960 Medicago truncatula HOM05D000009 ORTHO05D000008 5.0e-12 75.9 144 42.4
TPR.G5098 Trifolium pratense HOM05D000009 ORTHO05D000008 1.9e-11 73.9 145 42.8
TPR.G10881 Trifolium pratense HOM05D000009 ORTHO05D000008 2.5e-11 73.6 145 42.1
Medtr7g071940 Medicago truncatula HOM05D000009 ORTHO05D000008 3.2e-11 73.2 148 37.8
Cc00_g27700 Coffea canephora HOM05D000009 ORTHO05D000008 5.5e-11 72.4 157 35.0
Cc08_g05270 Coffea canephora HOM05D000009 ORTHO05D000008 9.3e-11 71.6 171 32.7
Medtr5g070490 Medicago truncatula HOM05D000009 ORTHO05D000008 1.2e-10 71.2 125 44.0
Medtr1g022380 Medicago truncatula HOM05D000009 ORTHO05D000008 1.6e-10 70.9 144 37.5
CSS0040834 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 2.7e-10 70.1 136 39.0
Ca_05584_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 4.6e-10 69.3 107 44.9
vmacro23306 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 4.6e-10 69.3 121 37.2
TPR.G24039 Trifolium pratense HOM05D000009 ORTHO05D000008 6.1e-10 68.9 117 40.2
Cc00_g11540 Coffea canephora HOM05D000009 ORTHO05D000008 1.0e-09 68.2 110 40.9
QL02p065249 Quercus lobata HOM05D000009 ORTHO05D000008 1.0e-09 68.2 126 36.5
CANSAT54G2752 Cannabis sativa HOM05D000009 ORTHO05D000008 1.3e-09 67.8 245 46.1
Medtr6g052760 Medicago truncatula HOM05D000009 ORTHO05D000008 1.3e-09 67.8 142 37.3
arahy.Tifrunner.gnm1.ann1.I91QXC Arachis hypogaea HOM05D000009 ORTHO05D000008 2.3e-09 67.0 79 51.9
Medtr6g052455 Medicago truncatula HOM05D000009 ORTHO05D000008 3.9e-09 66.2 276 27.5
Peaxi162Scf01108g00110 Petunia axillaris HOM05D000009 ORTHO05D000008 3.9e-09 66.2 241 50.2
PGSC0003DMG400029590 Solanum tuberosum HOM05D000009 ORTHO05D000008 3.9e-09 66.2 134 32.8
TAR636G0085 Trochodendron aralioides HOM05D000009 ORTHO05D000008 6.7e-09 65.5 81 43.2
Sopen01g034940 Solanum pennellii HOM05D000009 ORTHO05D000008 1.1e-08 64.7 242 45.5
TAR365G1199 Trochodendron aralioides HOM05D000009 ORTHO05D000008 1.1e-08 64.7 133 34.6
arahy.Tifrunner.gnm1.ann1.EM6AHT Arachis hypogaea HOM05D000009 ORTHO05D000008 1.5e-08 64.3 79 51.9
TPR.G13509 Trifolium pratense HOM05D000009 ORTHO05D025624 1.5e-08 64.3 58 55.2
Medtr0133s0020 Medicago truncatula HOM05D000009 ORTHO05D000008 1.9e-08 63.9 139 38.1
arahy.Tifrunner.gnm1.ann1.0R3YGY Arachis hypogaea HOM05D000009 ORTHO05D000008 2.5e-08 63.5 81 51.9
Medtr0256s0050 Medicago truncatula HOM05D000009 ORTHO05D000008 2.5e-08 63.5 162 36.4
vmacro00126 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 2.5e-08 63.5 141 37.6
Medtr3g023320 Medicago truncatula HOM05D000009 ORTHO05D000008 3.3e-08 63.2 135 35.6
Sopen02g003470 Solanum pennellii HOM05D000009 ORTHO05D000008 3.3e-08 63.2 109 36.7
arahy.Tifrunner.gnm1.ann1.CAI9RI Arachis hypogaea HOM05D000009 ORTHO05D000008 4.3e-08 62.8 107 43.0
Ciclev10027705m.g Citrus clementina HOM05D000009 ORTHO05D000008 4.3e-08 62.8 110 40.0
Solyc01g088060.3 Solanum lycopersicum HOM05D000009 ORTHO05D000008 4.3e-08 62.8 242 45.0
arahy.Tifrunner.gnm1.ann1.61LYXS Arachis hypogaea HOM05D000009 ORTHO05D000008 5.7e-08 62.4 81 48.1
arahy.Tifrunner.gnm1.ann1.SY9UAE Arachis hypogaea HOM05D000009 ORTHO05D000008 5.7e-08 62.4 81 48.1
Cc01_g05230 Coffea canephora HOM05D000009 ORTHO05D000008 5.7e-08 62.4 142 37.3
QL11p004429 Quercus lobata HOM05D000009 ORTHO05D000008 5.7e-08 62.4 125 36.8
arahy.Tifrunner.gnm1.ann1.LWFC3J Arachis hypogaea HOM05D000009 ORTHO05D000008 7.4e-08 62.0 79 48.1
arahy.Tifrunner.gnm1.ann1.U4QDWS Arachis hypogaea HOM05D000009 ORTHO05D000008 7.4e-08 62.0 81 46.9
Cc00_g16570 Coffea canephora HOM05D000009 ORTHO05D000008 7.4e-08 62.0 91 42.9
Cc03_g14850 Coffea canephora HOM05D000009 ORTHO05D000008 7.4e-08 62.0 146 36.3
Medtr1g023600 Medicago truncatula HOM05D000009 ORTHO05D000008 7.4e-08 62.0 144 35.4
CSS0050355 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 9.7e-08 61.6 114 35.1
Medtr0230s0010 Medicago truncatula HOM05D000009 ORTHO05D000008 9.7e-08 61.6 132 35.6
arahy.Tifrunner.gnm1.ann1.CD0F2D Arachis hypogaea HOM05D000009 ORTHO05D000008 1.3e-07 61.2 72 48.6
arahy.Tifrunner.gnm1.ann1.M0V26Z Arachis hypogaea HOM05D000009 ORTHO05D000008 1.3e-07 61.2 76 50.0
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 1.3e-07 61.2 128 33.6
Potri.001G025400 Populus trichocarpa HOM05D000009 ORTHO05D000008 1.6e-07 60.8 149 30.9
PGSC0003DMG400006769 Solanum tuberosum HOM05D000009 ORTHO05D000008 1.6e-07 60.8 242 48.8
Dinv03134 Davidia involucrata HOM05D000009 ORTHO05D000008 2.2e-07 60.5 262 26.7
Dinv10782 Davidia involucrata HOM05D000009 ORTHO05D004635 2.2e-07 60.5 175 33.7
Medtr5g070470 Medicago truncatula HOM05D000009 ORTHO05D000008 2.2e-07 60.5 125 40.0
Nn2g15158 Nelumbo nucifera HOM05D000009 ORTHO05D000008 2.2e-07 60.5 160 31.2
Medtr0511s0010 Medicago truncatula HOM05D000009 ORTHO05D036555 2.8e-07 60.1 99 41.4
Sopen08g024300 Solanum pennellii HOM05D000009 ORTHO05D000008 3.7e-07 59.7 138 37.7
TPR.G28373 Trifolium pratense HOM05D000009 ORTHO05D000008 3.7e-07 59.7 145 33.8
arahy.Tifrunner.gnm1.ann1.5F1M32 Arachis hypogaea HOM05D000009 ORTHO05D000008 4.8e-07 59.3 126 35.7
arahy.Tifrunner.gnm1.ann1.9D2PT6 Arachis hypogaea HOM05D000009 ORTHO05D000008 4.8e-07 59.3 126 35.7
arahy.Tifrunner.gnm1.ann1.G38IB6 Arachis hypogaea HOM05D000009 ORTHO05D000008 4.8e-07 59.3 107 42.1
Cc00_g11560 Coffea canephora HOM05D000009 ORTHO05D000008 4.8e-07 59.3 142 34.5
COL.COLO4_27159 Corchorus olitorius HOM05D000009 ORTHO05D000008 4.8e-07 59.3 160 35.0
arahy.Tifrunner.gnm1.ann1.8HC6C5 Arachis hypogaea HOM05D000009 ORTHO05D000008 6.3e-07 58.9 135 34.1
arahy.Tifrunner.gnm1.ann1.JAA9B4 Arachis hypogaea HOM05D000009 ORTHO05D000008 6.3e-07 58.9 79 46.8
arahy.Tifrunner.gnm1.ann1.JK0RBR Arachis hypogaea HOM05D000009 ORTHO05D000008 6.3e-07 58.9 81 48.1
arahy.Tifrunner.gnm1.ann1.VZQ2V7 Arachis hypogaea HOM05D000009 ORTHO05D000008 6.3e-07 58.9 135 34.1
Cc00_g09790 Coffea canephora HOM05D000009 ORTHO05D000008 6.3e-07 58.9 93 41.9
Aqoxy2G02945 Aquilegia oxysepala HOM05D000009 ORTHO05D000008 8.2e-07 58.5 151 35.1
Aqoxy311s004 Aquilegia oxysepala HOM05D000009 ORTHO05D000008 8.2e-07 58.5 151 35.1
CSS0002401 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 8.2e-07 58.5 79 44.3
Cc00_g23330 Coffea canephora HOM05D000009 ORTHO05D000008 8.2e-07 58.5 93 44.1
Phvul.002G075300 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 8.2e-07 58.5 248 27.4
Potri.017G121500 Populus trichocarpa HOM05D000009 ORTHO05D000008 8.2e-07 58.5 245 44.5
CANSAT54G1814 Cannabis sativa HOM05D000009 ORTHO05D000008 1.1e-06 58.2 158 35.4
Cc00_g33230 Coffea canephora HOM05D000009 ORTHO05D000008 1.1e-06 58.2 149 32.9
arahy.Tifrunner.gnm1.ann1.1U71WU Arachis hypogaea HOM05D000009 ORTHO05D000008 1.4e-06 57.8 138 31.9
arahy.Tifrunner.gnm1.ann1.UIPX5Z Arachis hypogaea HOM05D000009 ORTHO05D000008 1.4e-06 57.8 138 31.9
Cc08_g04160 Coffea canephora HOM05D000009 ORTHO05D000008 1.4e-06 57.8 108 39.8
Phvul.002G130666 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 1.4e-06 57.8 134 33.6
Solyc09g059840.1 Solanum lycopersicum HOM05D000009 ORTHO05D000008 1.4e-06 57.8 146 33.6
Cc00_g19510 Coffea canephora HOM05D000009 ORTHO05D000008 1.8e-06 57.4 152 33.6
Medtr7g021000 Medicago truncatula HOM05D000009 ORTHO05D000008 1.8e-06 57.4 167 31.1
Peaxi162Scf00502g00212 Petunia axillaris HOM05D000009 ORTHO05D000008 1.8e-06 57.4 79 46.8
arahy.Tifrunner.gnm1.ann1.IRQ4MV Arachis hypogaea HOM05D000009 ORTHO05D000008 2.4e-06 57.0 81 46.9
Potri.017G121700 Populus trichocarpa HOM05D000009 ORTHO05D000008 2.4e-06 57.0 106 33.0
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 2.4e-06 57.0 264 45.8
GSVIVG01001444001 Vitis vinifera HOM05D000009 ORTHO05D000008 2.4e-06 57.0 116 35.3
Hma1.2p1_0177F.1_g077860 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 3.1e-06 56.6 158 30.4
Aqoxy3G03483 Aquilegia oxysepala HOM05D000009 ORTHO05D000008 4.1e-06 56.2 81 40.7
Medtr6g047450 Medicago truncatula HOM05D000009 ORTHO05D000008 4.1e-06 56.2 131 35.9
QL07p043531 Quercus lobata HOM05D000009 ORTHO05D000008 4.1e-06 56.2 136 33.1
arahy.Tifrunner.gnm1.ann1.936HGS Arachis hypogaea HOM05D000009 ORTHO05D000008 5.3e-06 55.8 79 46.8
CiPaw.13G135700 Carya illinoinensis HOM05D000009 ORTHO05D000008 5.3e-06 55.8 135 31.9
Cc01_g00390 Coffea canephora HOM05D000009 ORTHO05D000008 5.3e-06 55.8 171 31.6
Medtr6g046440 Medicago truncatula HOM05D000009 ORTHO05D000008 5.3e-06 55.8 162 34.6
Hma1.2p1_1584F.1_g292040 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 6.9e-06 55.5 129 36.4
QL11p042820 Quercus lobata HOM05D000009 ORTHO05D000008 6.9e-06 55.5 163 32.5
Solyc02g014230.1 Solanum lycopersicum HOM05D000009 ORTHO05D000008 6.9e-06 55.5 109 33.9
Manes.04G165600 Manihot esculenta HOM05D000009 ORTHO05D000008 9.0e-06 55.1 144 30.6
Medtr3g086070 Medicago truncatula HOM05D000009 ORTHO05D000008 9.0e-06 55.1 162 35.2
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 9.0e-06 55.1 130 35.4
PGSC0003DMG404010943 Solanum tuberosum HOM05D000009 ORTHO05D004635 9.0e-06 55.1 155 32.9
Thecc.04G126500 Theobroma cacao HOM05D000009 ORTHO05D000008 9.0e-06 55.1 123 35.8
vmacro00268 Vaccinium macrocarpon HOM05D000009 ORTHO05D426527 9.0e-06 55.1 73 50.7


User provided reference genes

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