Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37970 Trifolium pratense HOM05D007064 ORTHO05D008772 9.6e-25 115.9 55 100.0
TPR.G40530 Trifolium pratense HOM05D007064 ORTHO05D008772 9.6e-25 115.9 55 100.0
Medtr5g006230 Medicago truncatula HOM05D007064 ORTHO05D008772 1.1e-23 112.5 55 96.4
Lalb_Chr09g0320151 Lupinus albus HOM05D007064 ORTHO05D008772 3.1e-23 110.9 55 92.7
Ca_24438_v3 Cicer arietinum L. HOM05D007064 ORTHO05D008772 4.0e-23 110.5 55 92.7
Glyma.11G009700 Glycine max HOM05D007064 ORTHO05D008772 4.0e-23 110.5 55 92.7
VMungo1215G2591 Vigna mungo HOM05D007064 ORTHO05D008772 1.2e-22 109.0 55 90.9
Psat0s4094g0040 Pisum sativum HOM05D007064 ORTHO05D008772 5.8e-22 106.7 55 90.9
Phvul.002G040600 Phaseolus vulgaris HOM05D007064 ORTHO05D008772 1.3e-21 105.5 55 85.5
LjContig00222g0020502 Lotus japonicus HOM05D007064 ORTHO05D008772 4.9e-21 103.6 55 85.5
GSVIVG01024376001 Vitis vinifera HOM05D007064 ORTHO05D008772 8.4e-21 102.8 55 85.5
arahy.Tifrunner.gnm1.ann1.EDBW82 Arachis hypogaea HOM05D007064 ORTHO05D008772 1.4e-20 102.1 55 83.6
arahy.Tifrunner.gnm1.ann1.P291P9 Arachis hypogaea HOM05D007064 ORTHO05D008772 1.4e-20 102.1 55 83.6
Glyma.01G233100 Glycine max HOM05D007064 ORTHO05D008772 1.4e-20 102.1 55 89.1
CSS0020222 Camellia sinensis var. sinensis HOM05D007064 ORTHO05D008772 2.5e-20 101.3 55 83.6
CSS0020425 Camellia sinensis var. sinensis HOM05D007064 ORTHO05D008772 2.5e-20 101.3 55 83.6
Cpa.g.sc43.98 Carica papaya HOM05D007064 ORTHO05D008772 4.2e-20 100.5 55 81.8
CiPaw.05G216200 Carya illinoinensis HOM05D007064 ORTHO05D008772 7.1e-20 99.8 55 80.0
Hma1.2p1_0649F.1_g195260 Hydrangea macrophylla HOM05D007064 ORTHO05D008772 2.1e-19 98.2 55 80.0
Thecc.05G215700 Theobroma cacao HOM05D007064 ORTHO05D008772 2.1e-19 98.2 55 80.0
TAR629G0708 Trochodendron aralioides HOM05D007064 ORTHO05D008772 2.1e-19 98.2 55 81.8
Haze_00398 Corylus avellana HOM05D007064 ORTHO05D008772 2.7e-19 97.8 55 78.2
Cfa016048 Carpinus fangiana HOM05D007064 ORTHO05D008772 3.5e-19 97.4 55 76.4
Actinidia34318 Actinidia chinensis HOM05D007064 ORTHO05D008772 4.6e-19 97.1 55 80.0
FvH4_4g01950 Fragaria vesca HOM05D007064 ORTHO05D008772 4.6e-19 97.1 55 80.0
FAN12G0288 Fragaria x ananassa HOM05D007064 ORTHO05D008772 4.6e-19 97.1 55 80.0
QL09p023233 Quercus lobata HOM05D007064 ORTHO05D008772 4.6e-19 97.1 53 79.2
Rhsim03G0222700 Rhododendron simsii HOM05D007064 ORTHO05D008772 4.6e-19 97.1 54 79.6
Zm00001eb187800 Zea mays HOM05D007064 ORTHO05D008772 4.6e-19 97.1 54 79.6
MD13G1202900 Malus domestica HOM05D007064 ORTHO05D008772 6.0e-19 96.7 50 84.0
Lj1A1033G66 Lonicera japonica HOM05D007064 ORTHO05D008772 1.0e-18 95.9 55 78.2
RcHm_v2.0_Chr4g0388921 Rosa chinensis HOM05D007064 ORTHO05D008772 1.3e-18 95.5 55 78.2
Atru.chr12.1880 Acer truncatum HOM05D007064 ORTHO05D008772 1.8e-18 95.1 55 76.4
Duzib106G1646 Durio zibethinus HOM05D007064 ORTHO05D008772 1.8e-18 95.1 55 76.4
Hund09801 Selenicereus undatus HOM05D007064 ORTHO05D000105 1.8e-18 95.1 54 77.8
Eucgr.K00080 Eucalyptus grandis HOM05D007064 ORTHO05D008772 2.3e-18 94.7 55 76.4
ECA238G0775 Erigeron canadensis HOM05D007064 ORTHO05D008772 3.0e-18 94.4 55 74.5
Nn1g00178 Nelumbo nucifera HOM05D007064 ORTHO05D008772 3.0e-18 94.4 55 76.4
Gohir.A11G303500 Gossypium hirsutum HOM05D007064 ORTHO05D008772 3.9e-18 94.0 55 76.4
Gohir.D11G318800 Gossypium hirsutum HOM05D007064 ORTHO05D008772 3.9e-18 94.0 55 76.4
Gorai.007G348800 Gossypium raimondii HOM05D007064 ORTHO05D008772 3.9e-18 94.0 55 76.4
Sc19g0000100 Simmondsia chinensis HOM05D007064 ORTHO05D008772 3.9e-18 94.0 55 76.4
SGA_v2.0_scaffold44G16901 Striga asiatica HOM05D007064 ORTHO05D008772 3.9e-18 94.0 51 80.4
Aqoxy3G02225 Aquilegia oxysepala HOM05D007064 ORTHO05D008772 5.1e-18 93.6 55 76.4
Migut.F00087 Erythranthe guttata HOM05D007064 ORTHO05D008772 5.1e-18 93.6 51 78.4
Os02g0694800 Oryza sativa ssp. japonica HOM05D007064 ORTHO05D008772 5.1e-18 93.6 54 77.8
SalBow4G1574 Salvia bowleyana HOM05D007064 ORTHO05D008772 5.1e-18 93.6 55 74.5
SalBow4G1678 Salvia bowleyana HOM05D007064 ORTHO05D008772 5.1e-18 93.6 55 74.5
COL.COLO4_15235 Corchorus olitorius HOM05D007064 ORTHO05D008772 8.7e-18 92.8 55 74.5
Ah.04g156400 Amaranthus hybridus HOM05D007064 ORTHO05D008772 1.1e-17 92.4 55 74.5
TWI60G0820 Tripterygium wilfordii HOM05D007064 ORTHO05D008772 1.1e-17 92.4 55 74.5
HPP92_025673 Vanilla planifolia HOM05D007064 ORTHO05D008772 1.1e-17 92.4 55 76.4
AUR62002078 Chenopodium quinoa HOM05D007064 ORTHO05D008772 1.5e-17 92.0 55 74.5
AUR62028195 Chenopodium quinoa HOM05D007064 ORTHO05D008772 1.9e-17 91.7 55 74.5
Ciclev10020357m.g Citrus clementina HOM05D007064 ORTHO05D008772 1.9e-17 91.7 55 72.7
Sabra19G0062000 Salix brachista HOM05D007064 ORTHO05D008772 3.3e-17 90.9 55 74.5
CANSAT78G1989 Cannabis sativa HOM05D007064 ORTHO05D008772 4.3e-17 90.5 50 78.0
Cc02_g00210 Coffea canephora HOM05D007064 ORTHO05D008772 4.3e-17 90.5 55 72.7
Nitab4.5_0004530g0030 Nicotiana tabacum HOM05D007064 ORTHO05D008772 5.7e-17 90.1 55 72.7
PGSC0003DMG400003147 Solanum tuberosum HOM05D007064 ORTHO05D008772 5.7e-17 90.1 55 72.7
AT5G16810 Arabidopsis thaliana HOM05D007064 ORTHO05D008772 1.3e-16 89.0 53 73.6
EL10Ac3g05060 Beta vulgaris HOM05D007064 ORTHO05D008772 1.3e-16 89.0 55 69.1
CBR_g8898 Chara braunii HOM05D007064 ORTHO05D008772 1.3e-16 89.0 54 72.2
Nitab4.5_0000021g0660 Nicotiana tabacum HOM05D007064 ORTHO05D008772 1.3e-16 89.0 55 70.9
Peaxi162Scf00516g00675 Petunia axillaris HOM05D007064 ORTHO05D008772 1.3e-16 89.0 55 70.9
CAN.G1131.22 Capsicum annuum HOM05D007064 ORTHO05D008772 1.6e-16 88.6 51 74.5
Solyc03g097130.3 Solanum lycopersicum HOM05D007064 ORTHO05D008772 1.6e-16 88.6 51 74.5
Sopen03g027870 Solanum pennellii HOM05D007064 ORTHO05D008772 1.6e-16 88.6 51 74.5
Carub.0006s1503 Capsella rubella HOM05D007064 ORTHO05D008772 2.1e-16 88.2 51 76.5
PSO063G1297 Papaver somniferum HOM05D007064 ORTHO05D008772 2.1e-16 88.2 55 70.9
PSO782G0881 Papaver somniferum HOM05D007064 ORTHO05D008772 2.1e-16 88.2 55 70.9
Mapoly0096s0061 Marchantia polymorpha HOM05D007064 ORTHO05D008772 2.8e-16 87.8 54 70.4
Sp6g27320 Schrenkiella parvula HOM05D007064 ORTHO05D008772 2.8e-16 87.8 53 73.6
SEGI_11081 Sequoiadendron giganteum HOM05D007064 ORTHO05D008772 2.8e-16 87.8 55 72.7
AL6G27830 Arabidopsis lyrata HOM05D007064 ORTHO05D008772 3.7e-16 87.4 53 73.6
THA.LOC104820893 Tarenaya hassleriana HOM05D007064 ORTHO05D008772 3.7e-16 87.4 53 71.7
CsaV3_3G050060 Cucumis sativus L. HOM05D007064 ORTHO05D008772 1.1e-15 85.9 55 67.3
Aa31LG11G12770 Aethionema arabicum HOM05D007064 ORTHO05D008772 1.4e-15 85.5 53 69.8
BcaC03g18516 Brassica carinata HOM05D007064 ORTHO05D008772 1.4e-15 85.5 53 71.7
BcaNung04953 Brassica carinata HOM05D007064 ORTHO05D008772 1.4e-15 85.5 53 71.7
A02p03790 Brassica napus HOM05D007064 ORTHO05D008772 1.4e-15 85.5 53 71.7
C02p08600 Brassica napus HOM05D007064 ORTHO05D008772 1.4e-15 85.5 53 71.7
BolC2t06775H Brassica oleracea HOM05D007064 ORTHO05D008772 1.4e-15 85.5 53 71.7
BraA02t05344Z Brassica rapa HOM05D007064 ORTHO05D008772 1.4e-15 85.5 53 71.7
ATR0829G191 Amborella trichopoda HOM05D007064 ORTHO05D008772 2.4e-15 84.7 55 69.1
Thhalv10013656m.g Eutrema salsugineum HOM05D007064 ORTHO05D008772 2.4e-15 84.7 53 71.7
HanXRQChr14g0451581 Helianthus annuus HOM05D007064 ORTHO05D008772 3.1e-15 84.3 55 67.3
Lsat_1_v5_gn_2_95061 Lactuca sativa HOM05D007064 ORTHO05D008772 6.9e-15 83.2 47 74.5
Sed0013285 Sechium edule HOM05D007064 ORTHO05D008772 6.9e-15 83.2 50 72.0
Pp3c23_10770 Physcomitrium patens HOM05D007064 ORTHO05D008772 5.8e-14 80.1 54 63.0
CDE11G0292 Ceratophyllum demersum HOM05D007064 ORTHO05D008772 6.5e-13 76.6 55 63.6
SMO343G0012 Selaginella moellendorffii HOM05D007064 ORTHO05D008772 1.4e-12 75.5 51 64.7
HanXRQChr01g0005821 Helianthus annuus HOM05D007064 ORTHO05D008772 5.5e-12 73.6 47 68.1
TWI60G1094 Tripterygium wilfordii HOM05D007064 ORTHO05D008772 1.0e-05 52.8 31 71.0


User provided reference genes

Program Settings