Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 5.5e-29 130.2 61 100.0
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 7.4e-18 93.2 60 75.0
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 7.4e-18 93.2 60 75.0
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 9.7e-18 92.8 60 73.3
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 9.7e-18 92.8 60 73.3
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 9.7e-18 92.8 60 73.3
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 9.7e-18 92.8 60 73.3
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 1.3e-17 92.4 60 71.7
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 1.6e-17 92.0 60 75.0
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 2.2e-17 91.7 60 71.7
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 2.2e-17 91.7 60 71.7
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 2.2e-17 91.7 60 71.7
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 4.8e-17 90.5 60 70.0
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 8.2e-17 89.7 60 71.7
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 8.2e-17 89.7 60 70.0
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.1e-16 89.4 60 68.3
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 1.4e-16 89.0 60 71.7
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 1.8e-16 88.6 60 70.0
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 1.8e-16 88.6 60 70.0
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 2.4e-16 88.2 59 71.2
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 3.1e-16 87.8 60 70.0
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 4.1e-16 87.4 60 70.0
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 5.3e-16 87.0 60 70.0
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 5.3e-16 87.0 60 66.7
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 6.9e-16 86.7 60 70.0
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 6.9e-16 86.7 60 70.0
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 6.9e-16 86.7 60 70.0
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 9.0e-16 86.3 60 68.3
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 9.0e-16 86.3 59 67.8
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 9.0e-16 86.3 60 66.7
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 9.0e-16 86.3 60 66.7
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 1.2e-15 85.9 60 66.7
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.2e-15 85.9 60 66.7
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 1.2e-15 85.9 60 66.7
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 1.2e-15 85.9 60 66.7
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 1.2e-15 85.9 60 66.7
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.5e-15 85.5 60 66.7
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 1.5e-15 85.5 60 68.3
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 1.5e-15 85.5 60 68.3
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 1.5e-15 85.5 60 68.3
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 1.5e-15 85.5 60 68.3
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.5e-15 85.5 60 68.3
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.5e-15 85.5 60 68.3
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 1.5e-15 85.5 60 68.3
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 1.5e-15 85.5 60 68.3
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 1.5e-15 85.5 60 68.3
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 1.5e-15 85.5 60 68.3
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.5e-15 85.5 60 66.7
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 2.0e-15 85.1 60 68.3
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 2.0e-15 85.1 60 66.7
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 2.0e-15 85.1 60 65.0
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 2.6e-15 84.7 60 68.3
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.6e-15 84.7 60 68.3
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.6e-15 84.7 60 68.3
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.6e-15 84.7 60 68.3
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.6e-15 84.7 60 68.3
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 2.6e-15 84.7 60 65.0
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 2.6e-15 84.7 60 68.3
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 2.6e-15 84.7 60 68.3
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 2.6e-15 84.7 60 68.3
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 2.6e-15 84.7 60 66.7
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 3.4e-15 84.3 60 66.7
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 3.4e-15 84.3 60 68.3
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 3.4e-15 84.3 60 68.3
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 3.4e-15 84.3 60 65.0
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 3.4e-15 84.3 60 66.7
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 3.4e-15 84.3 60 68.3
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 3.4e-15 84.3 60 66.7
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 3.4e-15 84.3 60 66.7
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 4.5e-15 84.0 60 65.0
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 4.5e-15 84.0 60 65.0
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 4.5e-15 84.0 60 65.0
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 4.5e-15 84.0 60 65.0
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 4.5e-15 84.0 60 63.3
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 4.5e-15 84.0 60 65.0
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 4.5e-15 84.0 60 66.7
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 4.5e-15 84.0 60 66.7
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 5.9e-15 83.6 60 66.7
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 5.9e-15 83.6 60 65.0
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 5.9e-15 83.6 60 65.0
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 5.9e-15 83.6 60 65.0
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 5.9e-15 83.6 60 66.7
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 5.9e-15 83.6 60 65.0
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 5.9e-15 83.6 60 65.0
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 5.9e-15 83.6 60 63.3
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 5.9e-15 83.6 60 65.0
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 7.7e-15 83.2 60 63.3
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 7.7e-15 83.2 60 65.0
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 7.7e-15 83.2 60 65.0
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 7.7e-15 83.2 60 65.0
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 7.7e-15 83.2 60 66.7
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 7.7e-15 83.2 60 66.7
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 7.7e-15 83.2 60 65.0
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 1.0e-14 82.8 60 68.3
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 1.3e-14 82.4 60 66.7
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.7e-14 82.0 60 63.3
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 1.7e-14 82.0 60 63.3
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 2.2e-14 81.6 60 63.3
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 2.2e-14 81.6 60 61.7
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 2.2e-14 81.6 60 65.0
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.2e-14 81.6 60 66.7
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.2e-14 81.6 60 66.7
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 2.9e-14 81.3 60 66.7
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 2.9e-14 81.3 60 63.3
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 2.9e-14 81.3 60 63.3
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 3.8e-14 80.9 60 65.0
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 3.8e-14 80.9 60 63.3
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 3.8e-14 80.9 60 63.3
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 5.0e-14 80.5 60 65.0
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 5.0e-14 80.5 60 65.0
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 6.5e-14 80.1 60 63.3
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 6.5e-14 80.1 60 63.3
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 6.5e-14 80.1 60 63.3
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 6.5e-14 80.1 60 63.3
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 6.5e-14 80.1 60 63.3
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 6.5e-14 80.1 60 63.3
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 6.5e-14 80.1 60 63.3
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 6.5e-14 80.1 60 63.3
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 6.5e-14 80.1 60 63.3
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 6.5e-14 80.1 60 63.3
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 6.5e-14 80.1 60 61.7
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 6.5e-14 80.1 60 65.0
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 8.5e-14 79.7 60 63.3
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 8.5e-14 79.7 60 63.3
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 8.5e-14 79.7 60 63.3
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 8.5e-14 79.7 60 60.0
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 8.5e-14 79.7 60 60.0
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 8.5e-14 79.7 60 65.0
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 8.5e-14 79.7 60 65.0
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.1e-13 79.3 60 63.3
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 1.1e-13 79.3 60 63.3
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 1.9e-13 78.6 60 61.7
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 1.9e-13 78.6 60 61.7
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 1.9e-13 78.6 60 61.7
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.9e-13 78.6 60 61.7
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 9.4e-13 76.3 60 61.7
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 2.7e-12 74.7 60 60.0
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 3.6e-12 74.3 60 55.0
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.8e-11 72.0 60 58.3
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 2.3e-11 71.6 60 53.3
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 3.0e-11 71.2 52 69.2
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 3.0e-11 71.2 52 69.2
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 3.9e-11 70.9 60 55.0
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 3.9e-11 70.9 60 55.0
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 6.7e-11 70.1 60 51.7
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 4.4e-10 67.4 59 47.5
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 4.4e-10 67.4 60 50.0
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 7.4e-10 66.6 67 50.7
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 9.7e-10 66.2 88 43.2
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 2.2e-09 65.1 70 47.1
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 3.7e-09 64.3 39 66.7
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 8.2e-09 63.2 60 50.0
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 9.1e-08 59.7 66 53.0
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 1.2e-07 59.3 64 43.8


User provided reference genes

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