Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40470 Trifolium pratense HOM05D005451 ORTHO05D006647 2.3e-26 121.3 55 100.0
TPR.G10764 Trifolium pratense HOM05D005451 ORTHO05D006647 7.6e-22 106.3 48 97.9
TPR.G32842 Trifolium pratense HOM05D005451 ORTHO05D006647 1.4e-20 102.1 48 91.7
Psat3g042120 Pisum sativum HOM05D005451 ORTHO05D006647 9.3e-20 99.4 47 91.5
Lj1g0026290 Lotus japonicus HOM05D005451 ORTHO05D006647 4.6e-19 97.1 47 89.4
Thecc.05G068800 Theobroma cacao HOM05D005451 ORTHO05D006647 4.6e-19 97.1 48 87.5
Ca_08909_v3 Cicer arietinum L. HOM05D005451 ORTHO05D006647 6.0e-19 96.7 47 87.2
Medtr7g102130 Medicago truncatula HOM05D005451 ORTHO05D006647 6.0e-19 96.7 48 87.5
Ciclev10017163m.g Citrus clementina HOM05D005451 ORTHO05D006647 1.8e-18 95.1 48 83.3
Sed0015565 Sechium edule HOM05D005451 ORTHO05D006647 1.8e-18 95.1 48 83.3
ClCG04G009330 Citrullus lanatus HOM05D005451 ORTHO05D006647 2.3e-18 94.7 47 85.1
QL07p043063 Quercus lobata HOM05D005451 ORTHO05D006647 2.3e-18 94.7 48 83.3
Dinv35793 Davidia involucrata HOM05D005451 ORTHO05D006647 3.0e-18 94.4 47 85.1
Duzib106G1340 Durio zibethinus HOM05D005451 ORTHO05D006647 3.0e-18 94.4 48 81.2
FAN15G0973 Fragaria x ananassa HOM05D005451 ORTHO05D006647 3.0e-18 94.4 48 81.2
Gohir.A04G071800 Gossypium hirsutum HOM05D005451 ORTHO05D006647 3.0e-18 94.4 48 81.2
Gohir.D04G110300 Gossypium hirsutum HOM05D005451 ORTHO05D006647 3.0e-18 94.4 48 81.2
Gorai.009G414400 Gossypium raimondii HOM05D005451 ORTHO05D006647 3.0e-18 94.4 48 81.2
VMungo1383G1956 Vigna mungo HOM05D005451 ORTHO05D006647 3.0e-18 94.4 47 85.1
Actinidia28910 Actinidia chinensis HOM05D005451 ORTHO05D006647 3.9e-18 94.0 47 85.1
CSS0014192 Camellia sinensis var. sinensis HOM05D005451 ORTHO05D006647 3.9e-18 94.0 47 83.0
CSS0019333 Camellia sinensis var. sinensis HOM05D005451 ORTHO05D006647 3.9e-18 94.0 47 83.0
COL.COLO4_26945 Corchorus olitorius HOM05D005451 ORTHO05D006647 3.9e-18 94.0 48 83.3
MELO3C024468.2 Cucumis melo HOM05D005451 ORTHO05D006647 3.9e-18 94.0 47 85.1
FAN05G1419 Fragaria x ananassa HOM05D005451 ORTHO05D006647 3.9e-18 94.0 48 81.2
FAN05G2954 Fragaria x ananassa HOM05D005451 ORTHO05D006647 3.9e-18 94.0 48 81.2
FAN09G1715 Fragaria x ananassa HOM05D005451 ORTHO05D006647 3.9e-18 94.0 48 81.2
FAN14G0704 Fragaria x ananassa HOM05D005451 ORTHO05D006647 3.9e-18 94.0 48 81.2
Manes.08G011600 Manihot esculenta HOM05D005451 ORTHO05D006647 3.9e-18 94.0 48 83.3
Atru.chr8.1787 Acer truncatum HOM05D005451 ORTHO05D006647 5.1e-18 93.6 47 83.0
Cfa017630 Carpinus fangiana HOM05D005451 ORTHO05D006647 5.1e-18 93.6 47 85.1
Haze_20523 Corylus avellana HOM05D005451 ORTHO05D006647 5.1e-18 93.6 47 85.1
RcHm_v2.0_Chr3g0470431 Rosa chinensis HOM05D005451 ORTHO05D006647 5.1e-18 93.6 47 83.0
Eucgr.A01667 Eucalyptus grandis HOM05D005451 ORTHO05D006647 6.7e-18 93.2 47 83.0
MD12G1109800 Malus domestica HOM05D005451 ORTHO05D006647 6.7e-18 93.2 47 83.0
Potri.006G123100 Populus trichocarpa HOM05D005451 ORTHO05D006647 6.7e-18 93.2 47 83.0
Sabra06G0097400 Salix brachista HOM05D005451 ORTHO05D006647 6.7e-18 93.2 47 83.0
SGA_v2.0_scaffold84G26539 Striga asiatica HOM05D005451 ORTHO05D006647 6.7e-18 93.2 47 83.0
Gohir.A09G145800 Gossypium hirsutum HOM05D005451 ORTHO05D006647 8.7e-18 92.8 47 83.0
CANSAT80G0106 Cannabis sativa HOM05D005451 ORTHO05D006647 1.1e-17 92.4 48 81.2
FvH4_6g16520 Fragaria vesca HOM05D005451 ORTHO05D006647 1.1e-17 92.4 48 79.2
TAR369G0910 Trochodendron aralioides HOM05D005451 ORTHO05D006647 1.1e-17 92.4 47 80.9
GSVIVG01033652001 Vitis vinifera HOM05D005451 ORTHO05D006647 1.1e-17 92.4 47 83.0
Duzib128G0902 Durio zibethinus HOM05D005451 ORTHO05D006647 1.5e-17 92.0 47 83.0
FAN02G0799 Fragaria x ananassa HOM05D005451 ORTHO05D006647 1.5e-17 92.0 47 80.9
Prupe.7G128400 Prunus persica HOM05D005451 ORTHO05D006647 1.5e-17 92.0 47 83.0
CsaV3_6G039920 Cucumis sativus L. HOM05D005451 ORTHO05D006647 1.9e-17 91.7 46 84.8
PSO063G2125 Papaver somniferum HOM05D005451 ORTHO05D006647 1.9e-17 91.7 47 78.7
PSO339G4566 Papaver somniferum HOM05D005451 ORTHO05D006647 1.9e-17 91.7 47 78.7
arahy.Tifrunner.gnm1.ann1.4RQ7RI Arachis hypogaea HOM05D005451 ORTHO05D006647 2.5e-17 91.3 47 83.0
arahy.Tifrunner.gnm1.ann1.EAT06N Arachis hypogaea HOM05D005451 ORTHO05D006647 2.5e-17 91.3 47 83.0
arahy.Tifrunner.gnm1.ann1.N3Z787 Arachis hypogaea HOM05D005451 ORTHO05D006647 2.5e-17 91.3 47 83.0
arahy.Tifrunner.gnm1.ann1.WMHD1H Arachis hypogaea HOM05D005451 ORTHO05D006647 2.5e-17 91.3 47 83.0
arahy.Tifrunner.gnm1.ann1.XN7WR1 Arachis hypogaea HOM05D005451 ORTHO05D006647 2.5e-17 91.3 47 83.0
Cc06_g04340 Coffea canephora HOM05D005451 ORTHO05D006647 3.3e-17 90.9 47 78.7
PGR004G0040 Punica granatum HOM05D005451 ORTHO05D006647 3.3e-17 90.9 47 78.7
Glyma.19G184600 Glycine max HOM05D005451 ORTHO05D006647 4.3e-17 90.5 47 80.9
Rhsim03G0090700 Rhododendron simsii HOM05D005451 ORTHO05D006647 4.3e-17 90.5 47 78.7
Hma1.2p1_0828F.1_g225120 Hydrangea macrophylla HOM05D005451 ORTHO05D006647 5.7e-17 90.1 47 83.0
Phvul.001G179600 Phaseolus vulgaris HOM05D005451 ORTHO05D006647 5.7e-17 90.1 47 83.0
TWI53G1613 Tripterygium wilfordii HOM05D005451 ORTHO05D006647 5.7e-17 90.1 47 80.9
Migut.L01710 Erythranthe guttata HOM05D005451 ORTHO05D006647 7.4e-17 89.7 47 80.9
Sc02g0001580 Simmondsia chinensis HOM05D005451 ORTHO05D006647 9.6e-17 89.4 47 76.6
Actinidia26660 Actinidia chinensis HOM05D005451 ORTHO05D006647 1.3e-16 89.0 47 80.9
TAR623G1526 Trochodendron aralioides HOM05D005451 ORTHO05D006647 1.3e-16 89.0 47 78.7
Gorai.006G162600 Gossypium raimondii HOM05D005451 ORTHO05D006647 1.6e-16 88.6 53 69.8
vmacro07300 Vaccinium macrocarpon HOM05D005451 ORTHO05D006647 1.6e-16 88.6 46 80.4
AT3G53220 Arabidopsis thaliana HOM05D005451 ORTHO05D006647 2.1e-16 88.2 48 79.2
SalBow6G0361 Salvia bowleyana HOM05D005451 ORTHO05D006647 2.1e-16 88.2 47 78.7
THA.LOC104805223 Tarenaya hassleriana HOM05D005451 ORTHO05D006647 2.1e-16 88.2 47 80.9
Nn6g35270 Nelumbo nucifera HOM05D005451 ORTHO05D006647 2.8e-16 87.8 47 76.6
MSTRG.26689 Avicennia marina HOM05D005451 ORTHO05D006647 3.7e-16 87.4 48 75.0
CiPaw.09G171400 Carya illinoinensis HOM05D005451 ORTHO05D006647 3.7e-16 87.4 47 78.7
Lsat_1_v5_gn_2_107281 Lactuca sativa HOM05D005451 ORTHO05D006647 3.7e-16 87.4 46 80.4
Aa31LG10G8380 Aethionema arabicum HOM05D005451 ORTHO05D006647 4.8e-16 87.0 48 77.1
Aqoxy1G01137 Aquilegia oxysepala HOM05D005451 ORTHO05D006647 4.8e-16 87.0 47 78.7
ECA248G2056 Erigeron canadensis HOM05D005451 ORTHO05D006647 4.8e-16 87.0 47 78.7
Lsat_1_v5_gn_1_51620 Lactuca sativa HOM05D005451 ORTHO05D006647 4.8e-16 87.0 47 76.6
SGA_v2.0_scaffold90G27758 Striga asiatica HOM05D005451 ORTHO05D006647 4.8e-16 87.0 47 76.6
Lalb_Chr20g0112581 Lupinus albus HOM05D005451 ORTHO05D006647 8.2e-16 86.3 47 78.7
AL5G34100 Arabidopsis lyrata HOM05D005451 ORTHO05D006647 1.1e-15 85.9 48 77.1
EL10Ac3g07190 Beta vulgaris HOM05D005451 ORTHO05D006647 1.4e-15 85.5 47 76.6
Glyma.03G184100 Glycine max HOM05D005451 ORTHO05D006647 1.4e-15 85.5 47 76.6
Hund19112 Selenicereus undatus HOM05D005451 ORTHO05D006647 1.4e-15 85.5 47 78.7
Aa31LG10G8270 Aethionema arabicum HOM05D005451 ORTHO05D006647 1.8e-15 85.1 48 75.0
CARHR163080 Cardamine hirsuta HOM05D005451 ORTHO05D006647 1.8e-15 85.1 48 77.1
unitig_899.g15217 Utricularia gibba HOM05D000548 ORTHO05D000987 1.8e-15 85.1 47 76.6
HPP92_021403 Vanilla planifolia HOM05D005451 ORTHO05D006647 1.8e-15 85.1 47 76.6
HPP92_027104 Vanilla planifolia HOM05D005451 ORTHO05D006647 1.8e-15 85.1 47 76.6
HanXRQChr11g0350471 Helianthus annuus HOM05D005451 ORTHO05D006647 4.0e-15 84.0 47 74.5
Os04g0560200 Oryza sativa ssp. japonica HOM05D005451 ORTHO05D006647 4.0e-15 84.0 47 76.6
Sp5g09120 Schrenkiella parvula HOM05D005451 ORTHO05D006647 4.0e-15 84.0 48 72.9
Solyc09g008290.4 Solanum lycopersicum HOM05D005451 ORTHO05D006647 4.0e-15 84.0 47 74.5
AUR62040850 Chenopodium quinoa HOM05D005451 ORTHO05D006647 6.9e-15 83.2 47 74.5
Zm00001eb074150 Zea mays HOM05D005451 ORTHO05D006647 6.9e-15 83.2 47 74.5
CDE09G0643 Ceratophyllum demersum HOM05D005451 ORTHO05D006647 9.0e-15 82.8 47 70.2
Thhalv10010819m.g Eutrema salsugineum HOM05D005451 ORTHO05D006647 9.0e-15 82.8 48 75.0
Sopen09g003110 Solanum pennellii HOM05D005451 ORTHO05D006647 9.0e-15 82.8 47 74.5
arahy.Tifrunner.gnm1.ann1.W9B6QC Arachis hypogaea HOM05D005451 ORTHO05D006647 1.2e-14 82.4 42 83.3
PGSC0003DMG400003891 Solanum tuberosum HOM05D005451 ORTHO05D006647 1.5e-14 82.0 47 74.5
Carub.0005s1975 Capsella rubella HOM05D005451 ORTHO05D006647 2.0e-14 81.6 48 77.1
Peaxi162Scf00722g00002 Petunia axillaris HOM05D005451 ORTHO05D006647 2.0e-14 81.6 47 72.3
ATR0776G022 Amborella trichopoda HOM05D005451 ORTHO05D006647 2.6e-14 81.3 47 72.3
Nitab4.5_0000578g0070 Nicotiana tabacum HOM05D005451 ORTHO05D006647 2.6e-14 81.3 47 74.5
BcaB02g07801 Brassica carinata HOM05D005451 ORTHO05D006647 3.4e-14 80.9 48 70.8
A07p21440 Brassica napus HOM05D005451 ORTHO05D006647 5.8e-14 80.1 48 70.8
BraA07t29831Z Brassica rapa HOM05D005451 ORTHO05D006647 5.8e-14 80.1 48 70.8
C06p21050 Brassica napus HOM05D005451 ORTHO05D006647 7.6e-14 79.7 48 70.8
BolC6t37290H Brassica oleracea HOM05D005451 ORTHO05D006647 7.6e-14 79.7 48 70.8
BcaB02g08532 Brassica carinata HOM05D005451 ORTHO05D006647 1.0e-13 79.3 48 68.8
CAN.G900.23 Capsicum annuum HOM05D005451 ORTHO05D006647 1.0e-13 79.3 47 72.3
BcaC02g09178 Brassica carinata HOM05D005451 ORTHO05D006647 1.3e-13 79.0 48 68.8
BcaC02g09179 Brassica carinata HOM05D005451 ORTHO05D006647 1.3e-13 79.0 48 68.8
C04p39740 Brassica napus HOM05D005451 ORTHO05D006647 1.3e-13 79.0 48 68.8
BolC4t25546H Brassica oleracea HOM05D005451 ORTHO05D006647 1.3e-13 79.0 48 68.8
Nitab4.5_0008624g0010 Nicotiana tabacum HOM05D005451 ORTHO05D006647 1.3e-13 79.0 47 74.5
Thhalv10017445m.g Eutrema salsugineum HOM05D005451 ORTHO05D006647 2.9e-13 77.8 47 70.2
AUR62030367 Chenopodium quinoa HOM05D005451 ORTHO05D006647 5.0e-13 77.0 47 70.2
A04p06230 Brassica napus HOM05D005451 ORTHO05D006647 1.1e-12 75.9 48 66.7
BraA04t16327Z Brassica rapa HOM05D005451 ORTHO05D006647 1.1e-12 75.9 48 66.7
Hund24635 Selenicereus undatus HOM05D005451 ORTHO05D006647 1.4e-12 75.5 47 70.2
AagrBONN_evm.TU.Sc2ySwM_368.2032 Anthoceros agrestis HOM05D005451 ORTHO05D006647 6.1e-11 70.1 46 58.7
arahy.Tifrunner.gnm1.ann1.Z3AS8D Arachis hypogaea HOM05D005451 ORTHO05D006647 6.1e-11 70.1 36 83.3
Dinv37322 Davidia involucrata HOM05D005451 ORTHO05D006647 6.1e-11 70.1 44 65.9
SMO203G0200 Selaginella moellendorffii HOM05D005451 ORTHO05D006647 1.0e-10 69.3 44 59.1
Mapoly0103s0022 Marchantia polymorpha HOM05D005451 ORTHO05D006647 1.3e-10 68.9 46 58.7
Pp3c9_9220 Physcomitrium patens HOM05D005451 ORTHO05D006647 5.1e-10 67.0 47 55.3
arahy.Tifrunner.gnm1.ann1.BM4P4F Arachis hypogaea HOM05D005451 ORTHO05D006647 6.7e-10 66.6 36 80.6
CBR_g19638 Chara braunii HOM05D005451 ORTHO05D006647 3.4e-06 54.3 46 41.3
arahy.Tifrunner.gnm1.ann1.D9EGN0 Arachis hypogaea HOM05D032153 ORTHO05D006647 4.5e-06 53.9 34 70.6
Nn2g10252 Nelumbo nucifera HOM05D000247 ORTHO05D000288 1.0e-05 52.8 50 50.0


User provided reference genes

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