Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4040 Trifolium pratense HOM05D009668 ORTHO05D009578 1.5e-87 326.2 171 100.0
Medtr3g084890 Medicago truncatula HOM05D009668 ORTHO05D009578 3.5e-41 172.2 226 48.7
Ca_09229_v3 Cicer arietinum L. HOM05D000049 ORTHO05D000027 7.1e-34 147.9 174 56.9
Medtr7g109930 Medicago truncatula HOM05D008364 ORTHO05D009578 4.0e-29 132.1 146 53.4
Sp6g17390 Schrenkiella parvula HOM05D013083 ORTHO05D009578 4.3e-15 85.5 78 51.3
Potri.005G103500 Populus trichocarpa HOM05D008364 ORTHO05D009578 9.6e-15 84.3 68 57.4
BraA02t06029Z Brassica rapa HOM05D013083 ORTHO05D009578 1.3e-14 84.0 70 51.4
A02p09650 Brassica napus HOM05D013083 ORTHO05D009578 2.1e-14 83.2 71 49.3
C02p16070 Brassica napus HOM05D013083 ORTHO05D009578 3.7e-14 82.4 71 47.9
BolC2t07716H Brassica oleracea HOM05D013083 ORTHO05D009578 3.7e-14 82.4 70 50.0
BcaB05g22211 Brassica carinata HOM05D000108 ORTHO05D001781 6.2e-14 81.6 70 48.6
Potri.002G011500 Populus trichocarpa HOM05D008364 ORTHO05D009578 6.2e-14 81.6 115 36.5
THA.LOC104813256 Tarenaya hassleriana HOM05D013083 ORTHO05D009578 1.1e-13 80.9 163 35.6
QL05p084023 Quercus lobata HOM05D008364 ORTHO05D009578 2.4e-13 79.7 67 55.2
Ciclev10007119m.g Citrus clementina HOM05D009668 ORTHO05D009578 3.1e-13 79.3 152 36.2
Sabra05G0085600 Salix brachista HOM05D000192 ORTHO05D000123 4.1e-13 79.0 149 36.2
Atru.chr1.58 Acer truncatum HOM05D009668 ORTHO05D009578 5.3e-13 78.6 161 35.4
FAN14G3007 Fragaria x ananassa HOM05D009668 ORTHO05D009578 5.3e-13 78.6 69 47.8
Prupe.3G304900 Prunus persica HOM05D008364 ORTHO05D009578 9.0e-13 77.8 90 43.3
FvH4_6g53282 Fragaria vesca HOM05D009668 ORTHO05D009578 1.5e-12 77.0 195 35.9
FvH4_3g23891 Fragaria vesca HOM05D008364 ORTHO05D009578 2.0e-12 76.6 70 44.3
FAN11G2266 Fragaria x ananassa HOM05D008364 ORTHO05D009578 2.0e-12 76.6 70 44.3
FAN02G0808 Fragaria x ananassa HOM05D009668 ORTHO05D009578 4.5e-12 75.5 193 34.7
FAN09G4247 Fragaria x ananassa HOM05D009668 ORTHO05D009578 4.5e-12 75.5 149 40.3
Sabra02G0008600 Salix brachista HOM05D008364 ORTHO05D009578 5.8e-12 75.1 70 45.7
QL09p001451 Quercus lobata HOM05D008364 ORTHO05D009578 1.3e-11 73.9 70 45.7
Atru.chr9.2110 Acer truncatum HOM05D009668 ORTHO05D009578 2.2e-11 73.2 119 38.7
Aa31LG5G12270 Aethionema arabicum HOM05D013083 ORTHO05D009578 3.8e-11 72.4 76 40.8
CiPaw.12G135100 Carya illinoinensis HOM05D008364 ORTHO05D009578 5.0e-11 72.0 113 38.9
Prupe.4G231200 Prunus persica HOM05D008364 ORTHO05D009578 5.0e-11 72.0 139 34.5
MD09G1012100 Malus domestica HOM05D008364 ORTHO05D009578 1.1e-10 70.9 173 31.8
Prupe.5G226000 Prunus persica HOM05D008364 ORTHO05D009578 3.2e-10 69.3 70 44.3
QL08p061688 Quercus lobata HOM05D008364 ORTHO05D009578 3.2e-10 69.3 102 32.4
Gohir.A11G277566 Gossypium hirsutum HOM05D004024 ORTHO05D004639 4.2e-10 68.9 69 46.4
Carub.0007s1419 Capsella rubella HOM05D013083 ORTHO05D009578 5.5e-10 68.6 72 41.7
Gohir.D11G287799 Gossypium hirsutum HOM05D008364 ORTHO05D009578 7.1e-10 68.2 64 50.0
QL09p004857 Quercus lobata HOM05D009668 ORTHO05D009578 7.1e-10 68.2 129 32.6
Gorai.007G311400 Gossypium raimondii HOM05D008364 ORTHO05D009578 9.3e-10 67.8 64 50.0
Sabra02G0008900 Salix brachista HOM05D008364 ORTHO05D009578 1.2e-09 67.4 115 33.0
Duzib068G1047 Durio zibethinus HOM05D009668 ORTHO05D009578 1.6e-09 67.0 71 39.4
MD17G1012800 Malus domestica HOM05D008364 ORTHO05D009578 1.6e-09 67.0 165 31.5
COL.COLO4_09771 Corchorus olitorius HOM05D008364 ORTHO05D009578 2.1e-09 66.6 63 47.6
RcHm_v2.0_Chr2g0175431 Rosa chinensis HOM05D009668 ORTHO05D009578 2.7e-09 66.2 183 30.1
AL3G13600 Arabidopsis lyrata HOM05D015281 ORTHO05D017419 6.1e-09 65.1 156 31.4
Prupe.3G304800 Prunus persica HOM05D009668 ORTHO05D009578 6.1e-09 65.1 155 34.2
Carub.0001s3320 Capsella rubella HOM05D015281 ORTHO05D017419 7.9e-09 64.7 79 38.0
Medtr3g089950 Medicago truncatula HOM05D008364 ORTHO05D009578 1.3e-08 63.9 64 45.3
Oeu061184.1 Olea europaea HOM05D009996 ORTHO05D011842 1.3e-08 63.9 69 40.6
Medtr7g029135 Medicago truncatula HOM05D022442 ORTHO05D036748 3.9e-08 62.4 61 47.5
TPR.G14106 Trifolium pratense HOM05D022442 ORTHO05D036748 3.9e-08 62.4 64 40.6
Thecc.03G061200 Theobroma cacao HOM05D013083 ORTHO05D009578 5.1e-08 62.0 120 30.8
Cfa014398 Carpinus fangiana HOM05D000571 ORTHO05D000435 6.7e-08 61.6 63 42.9
FvH4_6g53281 Fragaria vesca HOM05D009668 ORTHO05D009578 8.7e-08 61.2 162 28.4
Carub.0001s3319 Capsella rubella HOM05D015281 ORTHO05D017419 1.1e-07 60.8 72 41.7
Ciclev10010586m.g Citrus clementina HOM05D008364 ORTHO05D009578 1.1e-07 60.8 69 43.5
Gohir.A01G086301 Gossypium hirsutum HOM05D009668 ORTHO05D009578 1.1e-07 60.8 61 49.2
Gohir.D01G072500 Gossypium hirsutum HOM05D009668 ORTHO05D009578 1.9e-07 60.1 67 35.8
Cpa.g.sc3.365 Carica papaya HOM05D009668 ORTHO05D009578 2.5e-07 59.7 112 28.6
Haze_12861 Corylus avellana HOM05D000571 ORTHO05D000435 2.5e-07 59.7 169 26.6
Peaxi162Scf00541g00538 Petunia axillaris HOM05D009996 ORTHO05D011842 2.5e-07 59.7 69 36.2
COL.COLO4_09772 Corchorus olitorius HOM05D009668 ORTHO05D009578 3.3e-07 59.3 63 36.5
Gorai.002G095500 Gossypium raimondii HOM05D009668 ORTHO05D009578 4.3e-07 58.9 61 47.5
Solyc09g072840.3 Solanum lycopersicum HOM05D009996 ORTHO05D011842 4.3e-07 58.9 77 39.0
Haze_09775 Corylus avellana HOM05D009668 ORTHO05D009578 9.7e-07 57.8 65 38.5
COL.COLO4_09774 Corchorus olitorius HOM05D009668 ORTHO05D009578 1.3e-06 57.4 63 34.9
CARHR160600 Cardamine hirsuta HOM05D008364 ORTHO05D009578 2.2e-06 56.6 121 31.4
Medtr7g029145 Medicago truncatula HOM05D022442 ORTHO05D036748 2.2e-06 56.6 134 35.1
THA.LOC104825137 Tarenaya hassleriana HOM05D015281 ORTHO05D017419 2.2e-06 56.6 73 38.4
C07p46100 Brassica napus HOM05D008364 ORTHO05D009578 2.8e-06 56.2 84 36.9
BolC7t45126H Brassica oleracea HOM05D008364 ORTHO05D009578 2.8e-06 56.2 84 36.9
Psat3g026560 Pisum sativum HOM05D008364 ORTHO05D009578 2.8e-06 56.2 56 41.1
Solyc06g008950.2 Solanum lycopersicum HOM05D000520 ORTHO05D010009 2.8e-06 56.2 137 29.9
BcaC06g33062 Brassica carinata HOM05D008364 ORTHO05D009578 3.7e-06 55.8 84 36.9
Carub.0008s2814 Capsella rubella HOM05D008364 ORTHO05D009578 3.7e-06 55.8 161 28.6
Dinv28240 Davidia involucrata HOM05D000520 ORTHO05D010009 3.7e-06 55.8 63 39.7
Thecc.07G023900 Theobroma cacao HOM05D009668 ORTHO05D009578 3.7e-06 55.8 57 47.4
Glyma.20G232200 Glycine max HOM05D000520 ORTHO05D000399 4.8e-06 55.5 66 36.4
Gohir.D11G287832 Gossypium hirsutum HOM05D008364 ORTHO05D009578 4.8e-06 55.5 60 41.7
Sp7g28390 Schrenkiella parvula HOM05D015281 ORTHO05D017419 4.8e-06 55.5 156 32.1
Dinv23967 Davidia involucrata HOM05D001853 ORTHO05D000399 6.3e-06 55.1 64 40.6
Medtr7g109950 Medicago truncatula HOM05D013083 ORTHO05D009578 6.3e-06 55.1 57 50.9
PSO170G1749 Papaver somniferum HOM05D000520 ORTHO05D000399 6.3e-06 55.1 63 39.7
Psat2g096040 Pisum sativum HOM05D022442 ORTHO05D009578 6.3e-06 55.1 63 41.3
THA.LOC104807208 Tarenaya hassleriana HOM05D011200 ORTHO05D013143 6.3e-06 55.1 69 36.2
Gohir.A11G277632 Gossypium hirsutum HOM05D008364 ORTHO05D009578 8.2e-06 54.7 54 42.6
Gohir.A11G277700 Gossypium hirsutum HOM05D008364 ORTHO05D009578 8.2e-06 54.7 54 44.4
MBI19_g02905_MAGBIO Magnolia biondii HOM05D000520 ORTHO05D000399 8.2e-06 54.7 72 36.1
PSO407G0131 Papaver somniferum HOM05D000520 ORTHO05D000399 8.2e-06 54.7 63 38.1
PGR006G0001 Punica granatum HOM05D000520 ORTHO05D000399 8.2e-06 54.7 63 36.5


User provided reference genes

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