Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40354 Trifolium pratense HOM05D009500 ORTHO05D000368 3.7e-76 288.1 139 100.0
TPR.G6938 Trifolium pratense HOM05D009500 ORTHO05D000368 9.5e-64 246.9 138 84.8
TPR.G11409 Trifolium pratense HOM05D009500 ORTHO05D000368 4.3e-56 221.5 110 94.5
TPR.G4804 Trifolium pratense HOM05D008175 ORTHO05D000368 1.8e-38 162.9 103 71.8
TPR.G9274 Trifolium pratense HOM05D009500 ORTHO05D000368 3.4e-37 158.7 106 71.7
TPR.G6989 Trifolium pratense HOM05D009500 ORTHO05D000368 7.1e-35 151.0 97 72.2
TPR.G7001 Trifolium pratense HOM05D009500 ORTHO05D000368 1.8e-33 146.4 111 61.3
TPR.G4800 Trifolium pratense HOM05D009500 ORTHO05D000368 5.1e-33 144.8 111 61.3
Medtr7g116250 Medicago truncatula HOM05D008175 ORTHO05D000368 6.7e-33 144.4 109 64.2
TPR.G29294 Trifolium pratense HOM05D008175 ORTHO05D010403 2.8e-31 139.0 138 54.3
Ca_25084_v3 Cicer arietinum L. HOM05D009500 ORTHO05D010403 9.0e-30 134.0 111 59.5
TPR.G4783 Trifolium pratense HOM05D009500 ORTHO05D000368 1.2e-29 133.7 114 55.3
TPR.G6942 Trifolium pratense HOM05D009500 ORTHO05D000368 2.0e-29 132.9 117 58.1
Medtr7g116580 Medicago truncatula HOM05D009500 ORTHO05D000368 2.1e-26 122.9 108 52.8
Medtr7g114090 Medicago truncatula HOM05D009500 ORTHO05D000368 6.0e-26 121.3 106 52.8
Psat3g003680 Pisum sativum HOM05D009500 ORTHO05D000368 6.7e-25 117.9 115 48.7
TPR.G39541 Trifolium pratense HOM05D009500 ORTHO05D000368 3.7e-23 112.1 83 65.1
TPR.G4705 Trifolium pratense HOM05D008175 ORTHO05D000368 1.4e-22 110.2 106 53.8
TPR.G4702 Trifolium pratense HOM05D009500 ORTHO05D000368 1.7e-20 103.2 103 55.3
TPR.G4771 Trifolium pratense HOM05D009500 ORTHO05D000368 4.9e-20 101.7 101 55.4
Medtr5g090500 Medicago truncatula HOM05D009500 ORTHO05D000368 7.4e-16 87.8 55 72.7
RcHm_v2.0_Chr2g0168251 Rosa chinensis HOM05D000576 ORTHO05D000368 3.2e-11 72.4 106 41.5
CSS0001211 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 7.2e-11 71.2 96 41.7
CSS0016406 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 4.6e-10 68.6 96 41.7
FAN02G2714 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.0e-09 67.4 115 34.8
FAN05G3797 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.0e-09 67.4 112 34.8
FvH4_6g50840 Fragaria vesca HOM05D000576 ORTHO05D000368 3.9e-09 65.5 112 34.8
CSS0031751 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 8.8e-09 64.3 103 36.9
FAN14G0812 Fragaria x ananassa HOM05D000576 ORTHO05D000368 8.8e-09 64.3 112 34.8
RcHm_v2.0_Chr2g0167641 Rosa chinensis HOM05D000576 ORTHO05D000368 8.8e-09 64.3 105 37.1
GSVIVG01017697001 Vitis vinifera HOM05D000576 ORTHO05D000368 1.1e-08 63.9 98 37.8
Actinidia07081 Actinidia chinensis HOM05D000576 ORTHO05D000368 1.5e-08 63.5 111 32.4
FAN05G4147 Fragaria x ananassa HOM05D008847 ORTHO05D000368 1.5e-08 63.5 110 32.7
Rhsim02G0214100 Rhododendron simsii HOM05D000576 ORTHO05D000368 1.5e-08 63.5 99 39.4
FvH4_6g48151 Fragaria vesca HOM05D000576 ORTHO05D000368 2.0e-08 63.2 98 34.7
Medtr2g064400 Medicago truncatula HOM05D008175 ORTHO05D010403 2.5e-08 62.8 104 37.5
Potri.017G092301 Populus trichocarpa HOM05D008175 ORTHO05D000368 2.5e-08 62.8 102 35.3
RcHm_v2.0_Chr2g0167551 Rosa chinensis HOM05D000576 ORTHO05D000368 2.5e-08 62.8 101 33.7
RcHm_v2.0_Chr2g0166621 Rosa chinensis HOM05D000576 ORTHO05D000368 3.3e-08 62.4 106 34.9
RcHm_v2.0_Chr2g0167561 Rosa chinensis HOM05D000576 ORTHO05D000368 3.3e-08 62.4 97 39.2
Ciclev10013373m.g Citrus clementina HOM05D000576 ORTHO05D000368 4.3e-08 62.0 99 38.4
FvH4_6g44041 Fragaria vesca HOM05D008847 ORTHO05D000368 7.4e-08 61.2 93 37.6
FAN05G2407 Fragaria x ananassa HOM05D000576 ORTHO05D000368 7.4e-08 61.2 99 33.3
Medtr7g095390 Medicago truncatula HOM05D008175 ORTHO05D010403 1.7e-07 60.1 95 40.0
Prupe.3G259800 Prunus persica HOM05D000576 ORTHO05D000368 2.2e-07 59.7 93 37.6
vmacro11253 Vaccinium macrocarpon HOM05D000576 ORTHO05D000368 2.2e-07 59.7 98 35.7
MD09G1063900 Malus domestica HOM05D000576 ORTHO05D000368 3.7e-07 58.9 96 37.5
FAN15G1855 Fragaria x ananassa HOM05D000576 ORTHO05D000368 4.8e-07 58.5 102 34.3
FAN09G2824 Fragaria x ananassa HOM05D000576 ORTHO05D000368 8.2e-07 57.8 98 36.7
FvH4_6g47821 Fragaria vesca HOM05D000576 ORTHO05D000368 1.1e-06 57.4 105 31.4
FAN14G3739 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.1e-06 57.4 105 31.4
Os12g0127400 Oryza sativa ssp. japonica HOM05D000576 ORTHO05D000368 1.1e-06 57.4 89 36.0
RcHm_v2.0_Chr2g0106371 Rosa chinensis HOM05D029661 ORTHO05D029371 1.1e-06 57.4 99 35.4
Ca_26228_v3 Cicer arietinum L. HOM05D008175 ORTHO05D010403 1.4e-06 57.0 58 48.3
FvH4_7g08150 Fragaria vesca HOM05D000576 ORTHO05D000368 1.4e-06 57.0 103 34.0
FAN06G0443 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.4e-06 57.0 103 34.0
FAN01G1348 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.8e-06 56.6 103 34.0
FAN09G3162 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.8e-06 56.6 65 41.5
SGA_v2.0_scaffold181G39803 Striga asiatica HOM05D000576 ORTHO05D000368 2.4e-06 56.2 100 35.0
TPR.G4066 Trifolium pratense HOM05D008175 ORTHO05D010403 2.4e-06 56.2 101 33.7
Atru.chr4.3173 Acer truncatum HOM05D000576 ORTHO05D000368 3.1e-06 55.8 99 38.4
Sabra17G0081300 Salix brachista HOM05D000576 ORTHO05D000368 3.1e-06 55.8 105 29.5
Os11g0130500 Oryza sativa ssp. japonica HOM05D000576 ORTHO05D000368 4.1e-06 55.5 89 34.8
QL10p005093 Quercus lobata HOM05D000576 ORTHO05D000368 4.1e-06 55.5 68 38.2
Atru.chr4.3172 Acer truncatum HOM05D000576 ORTHO05D000368 5.3e-06 55.1 99 38.4
Hma1.2p1_0024F.1_g015920 Hydrangea macrophylla HOM05D000576 ORTHO05D000368 5.3e-06 55.1 105 32.4
Dinv22832 Davidia involucrata HOM05D000576 ORTHO05D000368 6.9e-06 54.7 54 48.1
FAN05G2544 Fragaria x ananassa HOM05D008847 ORTHO05D016304 6.9e-06 54.7 93 34.4
TAR633G1895 Trochodendron aralioides HOM05D000576 ORTHO05D000368 6.9e-06 54.7 52 50.0
FvH4_6g44020 Fragaria vesca HOM05D008847 ORTHO05D000368 9.1e-06 54.3 91 35.2
TAR633G2125 Trochodendron aralioides HOM05D000576 ORTHO05D000368 9.1e-06 54.3 52 50.0


User provided reference genes

Program Settings