Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40346 Trifolium pratense HOM05D000200 ORTHO05D020766 3.1e-32 141.4 80 100.0
Medtr1g069290 Medicago truncatula HOM05D000200 ORTHO05D000262 3.8e-22 107.8 98 69.4
Ca_09632_v3 Cicer arietinum L. HOM05D000200 ORTHO05D000262 2.5e-21 105.1 98 68.4
Lalb_Chr21g0314181 Lupinus albus HOM05D000200 ORTHO05D000262 4.7e-20 100.9 98 64.3
VMungo0720G0278 Vigna mungo HOM05D000200 ORTHO05D000262 6.1e-20 100.5 98 65.3
Lj5g0016610 Lotus japonicus HOM05D000200 ORTHO05D000262 1.5e-18 95.9 99 63.6
TPR.G32411 Trifolium pratense HOM05D000200 ORTHO05D020766 1.3e-17 92.8 88 68.2
arahy.Tifrunner.gnm1.ann1.8KS6DS Arachis hypogaea HOM05D000200 ORTHO05D000262 1.7e-17 92.4 99 62.6
arahy.Tifrunner.gnm1.ann1.SHPC4Z Arachis hypogaea HOM05D000200 ORTHO05D000262 1.7e-17 92.4 99 62.6
Phvul.001G167900 Phaseolus vulgaris HOM05D000200 ORTHO05D000262 4.8e-17 90.9 98 57.1
TPR.G26514 Trifolium pratense HOM05D000200 ORTHO05D020766 6.3e-17 90.5 79 70.9
CAN.G941.32 Capsicum annuum HOM05D000200 ORTHO05D000262 5.3e-16 87.4 99 55.6
Lj2C1139G2 Lonicera japonica HOM05D000200 ORTHO05D000262 9.1e-16 86.7 100 54.0
Cc03_g06980 Coffea canephora HOM05D000200 ORTHO05D000262 2.0e-15 85.5 98 56.1
FAN27G2640 Fragaria x ananassa HOM05D000200 ORTHO05D000262 3.5e-15 84.7 98 54.1
Peaxi162Scf00183g00011 Petunia axillaris HOM05D000200 ORTHO05D000262 5.9e-15 84.0 99 50.5
Nitab4.5_0000385g0190 Nicotiana tabacum HOM05D000200 ORTHO05D000262 7.7e-15 83.6 98 51.0
Nitab4.5_0007788g0020 Nicotiana tabacum HOM05D000200 ORTHO05D000262 7.7e-15 83.6 98 51.0
Lj3C630G10 Lonicera japonica HOM05D000200 ORTHO05D000262 1.0e-14 83.2 98 54.1
TPR.G17979 Trifolium pratense HOM05D000200 ORTHO05D020766 1.3e-14 82.8 79 68.4
TPR.G22851 Trifolium pratense HOM05D000200 ORTHO05D000262 1.3e-14 82.8 97 59.8
AUR62008839 Chenopodium quinoa HOM05D000200 ORTHO05D000262 2.2e-14 82.0 98 54.1
Sed0000280 Sechium edule HOM05D000200 ORTHO05D000262 8.5e-14 80.1 98 50.0
Sed0010619 Sechium edule HOM05D000200 ORTHO05D000262 1.1e-13 79.7 98 53.1
GSVIVG01028990001 Vitis vinifera HOM05D000200 ORTHO05D000262 1.1e-13 79.7 98 52.0
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 2.5e-13 78.6 98 52.0
ECA247G1722 Erigeron canadensis HOM05D000200 ORTHO05D000262 7.2e-13 77.0 97 54.6
Glyma.10G041700 Glycine max HOM05D000200 ORTHO05D000262 1.0e-11 73.2 98 54.1
PGR004G0651 Punica granatum HOM05D000200 ORTHO05D000262 1.0e-11 73.2 96 49.0
arahy.Tifrunner.gnm1.ann1.CGBE6F Arachis hypogaea HOM05D000200 ORTHO05D000262 4.0e-11 71.2 98 53.1
PSO832G2285 Papaver somniferum HOM05D000200 ORTHO05D000262 6.7e-11 70.5 103 48.5
vmacro15873 Vaccinium macrocarpon HOM05D000200 ORTHO05D020766 6.7e-11 70.5 98 52.0
arahy.Tifrunner.gnm1.ann1.Q6MAYS Arachis hypogaea HOM05D000200 ORTHO05D000262 1.1e-10 69.7 98 52.0
Glyma.13G128700 Glycine max HOM05D000200 ORTHO05D000262 2.6e-10 68.6 98 52.0
Psat6g063800 Pisum sativum HOM05D000200 ORTHO05D000262 3.3e-10 68.2 98 52.0
Migut.N02239 Erythranthe guttata HOM05D000200 ORTHO05D000262 4.4e-10 67.8 96 49.0
Phvul.007G155000 Phaseolus vulgaris HOM05D000200 ORTHO05D000262 7.5e-10 67.0 98 53.1
Lalb_Chr02g0152891 Lupinus albus HOM05D000200 ORTHO05D000262 9.7e-10 66.6 98 52.0
Gorai.007G150900 Gossypium raimondii HOM05D000200 ORTHO05D000262 1.3e-09 66.2 96 51.0
FAN24G1990 Fragaria x ananassa HOM05D000200 ORTHO05D000262 1.7e-09 65.9 98 45.9
Medtr7g099290 Medicago truncatula HOM05D000200 ORTHO05D000262 1.7e-09 65.9 98 49.0
RcHm_v2.0_Chr6g0285891 Rosa chinensis HOM05D000200 ORTHO05D000262 1.7e-09 65.9 98 46.9
BcaNung01374 Brassica carinata HOM05D000200 ORTHO05D000262 2.2e-09 65.5 96 46.9
C01p10810 Brassica napus HOM05D000200 ORTHO05D000262 2.2e-09 65.5 96 46.9
BolC1t01042H Brassica oleracea HOM05D000200 ORTHO05D000262 2.2e-09 65.5 96 46.9
CSS0028794 Camellia sinensis var. sinensis HOM05D000200 ORTHO05D000262 2.2e-09 65.5 104 45.2
Medtr1g037500 Medicago truncatula HOM05D000200 ORTHO05D000262 3.7e-09 64.7 98 40.8
PSO764G0301 Papaver somniferum HOM05D000200 ORTHO05D000262 3.7e-09 64.7 103 47.6
Glyma.10G129700 Glycine max HOM05D000200 ORTHO05D020766 4.8e-09 64.3 80 56.2
Hma1.2p1_0112F.1_g055020 Hydrangea macrophylla HOM05D000200 ORTHO05D000262 4.8e-09 64.3 98 48.0
Sp1g02980 Schrenkiella parvula HOM05D000200 ORTHO05D000262 6.3e-09 63.9 98 41.8
Aqoxy1G02207 Aquilegia oxysepala HOM05D000200 ORTHO05D000262 8.2e-09 63.5 98 48.0
TWI18G0133 Tripterygium wilfordii HOM05D000200 ORTHO05D000262 1.1e-08 63.2 98 48.0
Glyma.19G170700 Glycine max HOM05D000200 ORTHO05D000262 1.4e-08 62.8 98 49.0
MSTRG.21451 Avicennia marina HOM05D000200 ORTHO05D000262 1.8e-08 62.4 92 44.6
Haze_24748 Corylus avellana HOM05D000200 ORTHO05D000262 1.8e-08 62.4 81 53.1
TAR633G1199 Trochodendron aralioides HOM05D000200 ORTHO05D000262 1.8e-08 62.4 98 45.9
Sabra02G0193400 Salix brachista HOM05D000200 ORTHO05D000262 2.4e-08 62.0 98 46.9
Aqoxy2G03811 Aquilegia oxysepala HOM05D000200 ORTHO05D000262 3.1e-08 61.6 98 45.9
A01p09230 Brassica napus HOM05D000200 ORTHO05D000262 3.1e-08 61.6 96 44.8
BraA01t00866Z Brassica rapa HOM05D000200 ORTHO05D000262 3.1e-08 61.6 96 44.8
CiPaw.03G273000 Carya illinoinensis HOM05D000200 ORTHO05D000262 3.1e-08 61.6 97 46.4
Thhalv10006554m.g Eutrema salsugineum HOM05D000200 ORTHO05D000262 3.1e-08 61.6 98 40.8
CANSAT01G2202 Cannabis sativa HOM05D000200 ORTHO05D000262 5.3e-08 60.8 98 50.0
Ciclev10018480m.g Citrus clementina HOM05D000200 ORTHO05D000262 5.3e-08 60.8 98 45.9
Dinv19254 Davidia involucrata HOM05D000200 ORTHO05D000262 5.3e-08 60.8 98 44.9
FAN15G3174 Fragaria x ananassa HOM05D000200 ORTHO05D000262 5.3e-08 60.8 98 44.9
CANSAT01G0471 Cannabis sativa HOM05D000200 ORTHO05D000262 7.0e-08 60.5 98 50.0
Carub.0001s0331 Capsella rubella HOM05D000200 ORTHO05D000262 7.0e-08 60.5 98 41.8
Glyma.03G169500 Glycine max HOM05D000200 ORTHO05D000262 7.0e-08 60.5 98 49.0
HPP92_022604 Vanilla planifolia HOM05D000200 ORTHO05D000262 7.0e-08 60.5 98 41.8
C08p52450 Brassica napus HOM05D000200 ORTHO05D000262 9.1e-08 60.1 98 41.8
CARHR003500 Cardamine hirsuta HOM05D000200 ORTHO05D000262 9.1e-08 60.1 98 40.8
FvH4_2g20160 Fragaria vesca HOM05D000200 ORTHO05D000262 9.1e-08 60.1 98 44.9
Nitab4.5_0000326g0340 Nicotiana tabacum HOM05D000200 ORTHO05D000262 9.1e-08 60.1 99 42.4
Potri.008G174500 Populus trichocarpa HOM05D000200 ORTHO05D000262 9.1e-08 60.1 98 43.9
PGSC0003DMG400014709 Solanum tuberosum HOM05D000200 ORTHO05D000262 9.1e-08 60.1 99 42.4
Gohir.A11G134500 Gossypium hirsutum HOM05D000200 ORTHO05D000262 1.2e-07 59.7 96 47.9
Gorai.004G223100 Gossypium raimondii HOM05D000200 ORTHO05D000262 1.2e-07 59.7 98 49.0
TPR.G7554 Trifolium pratense HOM05D000200 ORTHO05D000262 1.2e-07 59.7 45 71.1
BcaNung04099 Brassica carinata HOM05D000200 ORTHO05D000262 1.6e-07 59.3 98 43.9
Eucgr.H00833 Eucalyptus grandis HOM05D000200 ORTHO05D000262 1.6e-07 59.3 98 45.9
Gohir.A08G192400 Gossypium hirsutum HOM05D000200 ORTHO05D000262 1.6e-07 59.3 98 49.0
Potri.002G254300 Populus trichocarpa HOM05D000200 ORTHO05D000262 1.6e-07 59.3 98 45.9
Solyc06g008090.3 Solanum lycopersicum HOM05D000200 ORTHO05D000262 1.6e-07 59.3 99 42.4
Aa31LG1G20690 Aethionema arabicum HOM05D000200 ORTHO05D000262 2.0e-07 58.9 96 41.7
BcaC07g42203 Brassica carinata HOM05D000200 ORTHO05D000262 2.0e-07 58.9 98 40.8
BolC8t52772H Brassica oleracea HOM05D000200 ORTHO05D000262 2.0e-07 58.9 98 40.8
ECA238G0104 Erigeron canadensis HOM05D000200 ORTHO05D000262 2.0e-07 58.9 96 43.8
Thhalv10016129m.g Eutrema salsugineum HOM05D000200 ORTHO05D000262 2.0e-07 58.9 46 65.2
HanXRQChr01g0014821 Helianthus annuus HOM05D000200 ORTHO05D000262 2.0e-07 58.9 97 46.4
A09p68010 Brassica napus HOM05D000200 ORTHO05D000262 2.7e-07 58.5 98 40.8
BraA09t42136Z Brassica rapa HOM05D000200 ORTHO05D000262 2.7e-07 58.5 98 40.8
Nitab4.5_0003288g0010 Nicotiana tabacum HOM05D000200 ORTHO05D000262 2.7e-07 58.5 99 41.4
Haze_24731 Corylus avellana HOM05D000200 ORTHO05D000262 3.5e-07 58.2 98 46.9
MBI07_g22386_MAGBIO Magnolia biondii HOM05D000200 ORTHO05D000262 3.5e-07 58.2 95 44.2
TWI75G0124 Tripterygium wilfordii HOM05D000200 ORTHO05D000262 3.5e-07 58.2 98 45.9
GSVIVG01028469001 Vitis vinifera HOM05D000200 ORTHO05D000262 3.5e-07 58.2 98 42.9
AT1G04160 Arabidopsis thaliana HOM05D000200 ORTHO05D000262 4.5e-07 57.8 98 41.8
Sc05g0002540 Simmondsia chinensis HOM05D000200 ORTHO05D000262 4.5e-07 57.8 98 46.9
ECA248G0139 Erigeron canadensis HOM05D000200 ORTHO05D000262 5.9e-07 57.4 97 46.4
Gohir.D08G210400 Gossypium hirsutum HOM05D000200 ORTHO05D000262 5.9e-07 57.4 98 48.0
Nn1g03059 Nelumbo nucifera HOM05D000200 ORTHO05D000262 5.9e-07 57.4 98 42.9
Duzib211G0550 Durio zibethinus HOM05D000200 ORTHO05D000262 7.7e-07 57.0 98 45.9
Manes.03G155500 Manihot esculenta HOM05D000200 ORTHO05D000262 7.7e-07 57.0 98 42.9
TPR.G30854 Trifolium pratense HOM05D000200 ORTHO05D000262 7.7e-07 57.0 98 48.0
AL1G13760 Arabidopsis lyrata HOM05D000200 ORTHO05D000262 1.0e-06 56.6 98 40.8
COL.COLO4_35511 Corchorus olitorius HOM05D000200 ORTHO05D000262 1.0e-06 56.6 98 48.0
Dinv43045 Davidia involucrata HOM05D000200 ORTHO05D000262 1.0e-06 56.6 98 40.8
SGA_v2.0_scaffold42G16165 Striga asiatica HOM05D000200 ORTHO05D000262 1.0e-06 56.6 110 40.9
Migut.J00369 Erythranthe guttata HOM05D000200 ORTHO05D000262 1.3e-06 56.2 92 43.5
Thhalv10006545m.g Eutrema salsugineum HOM05D000200 ORTHO05D000262 1.3e-06 56.2 49 61.2
Thecc.01G246200 Theobroma cacao HOM05D000200 ORTHO05D000262 1.3e-06 56.2 98 48.0
Lsat_1_v5_gn_5_180001 Lactuca sativa HOM05D000200 ORTHO05D000262 1.7e-06 55.8 97 45.4
PGR083G1041 Punica granatum HOM05D000200 ORTHO05D000262 1.7e-06 55.8 98 43.9
VMungo1383G2133 Vigna mungo HOM05D000200 ORTHO05D000262 1.7e-06 55.8 98 46.9
Cpa.g.sc87.70 Carica papaya HOM05D000200 ORTHO05D000262 2.2e-06 55.5 102 43.1
Peaxi162Scf00043g00132 Petunia axillaris HOM05D000200 ORTHO05D000262 2.2e-06 55.5 98 39.8
QL09p043019 Quercus lobata HOM05D000200 ORTHO05D000262 2.2e-06 55.5 98 45.9
Thecc.04G218500 Theobroma cacao HOM05D000200 ORTHO05D000262 3.8e-06 54.7 98 43.9
Zm00001eb305960 Zea mays HOM05D000200 ORTHO05D000262 3.8e-06 54.7 98 39.8
Psat3g050400 Pisum sativum HOM05D000200 ORTHO05D000262 5.0e-06 54.3 98 45.9
CDE02G0729 Ceratophyllum demersum HOM05D000200 ORTHO05D000262 6.5e-06 53.9 96 41.7
Hund05505 Selenicereus undatus HOM05D000200 ORTHO05D000262 6.5e-06 53.9 121 38.0
Ah.15g091700 Amaranthus hybridus HOM05D000200 ORTHO05D000262 8.5e-06 53.5 98 41.8
SGA_v2.0_scaffold31G12605 Striga asiatica HOM05D000200 ORTHO05D000262 8.5e-06 53.5 122 36.1


User provided reference genes

Program Settings