Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40338 Trifolium pratense HOM05D000015 ORTHO05D011289 8.4e-31 136.3 67 100.0
TPR.G31915 Trifolium pratense HOM05D000015 ORTHO05D000984 1.8e-25 118.6 67 89.6
Psat0s1268g0360 Pisum sativum HOM05D000015 ORTHO05D000984 2.6e-24 114.8 67 85.1
Medtr7g081750 Medicago truncatula HOM05D000015 ORTHO05D000984 3.4e-24 114.4 67 85.1
Ca_08059_v3 Cicer arietinum L. HOM05D000015 ORTHO05D000984 7.4e-19 96.7 48 93.8
Glyma.18G250100 Glycine max HOM05D000015 ORTHO05D000984 2.8e-18 94.7 61 72.1
Glyma.18G249800 Glycine max HOM05D000015 ORTHO05D000984 8.1e-18 93.2 61 70.5
Ca_07587_v3 Cicer arietinum L. HOM05D000015 ORTHO05D000984 2.4e-17 91.7 67 64.2
Psat0s2566g0040 Pisum sativum HOM05D000015 ORTHO05D000984 5.3e-17 90.5 67 65.7
Ca_07589_v3 Cicer arietinum L. HOM05D000015 ORTHO05D000984 9.0e-17 89.7 67 62.7
Phvul.008G047700 Phaseolus vulgaris HOM05D000015 ORTHO05D000984 9.0e-17 89.7 67 70.1
Psat0s3723g0120 Pisum sativum HOM05D000015 ORTHO05D000984 9.0e-17 89.7 48 83.3
Medtr7g081580 Medicago truncatula HOM05D000015 ORTHO05D000984 3.4e-16 87.8 67 62.7
Medtr7g481600 Medicago truncatula HOM05D000015 ORTHO05D000984 3.4e-16 87.8 67 62.7
Medtr7g081420 Medicago truncatula HOM05D000015 ORTHO05D000984 7.6e-16 86.7 67 59.7
arahy.Tifrunner.gnm1.ann1.R1HH90 Arachis hypogaea HOM05D000015 ORTHO05D000984 9.9e-16 86.3 67 62.7
Medtr7g081500 Medicago truncatula HOM05D000015 ORTHO05D000984 9.9e-16 86.3 67 64.2
Psat0s1268g0280 Pisum sativum HOM05D000015 ORTHO05D011289 9.9e-16 86.3 64 65.6
Phvul.008G047900 Phaseolus vulgaris HOM05D000015 ORTHO05D000984 1.7e-15 85.5 66 63.6
Glyma.09G243700 Glycine max HOM05D000015 ORTHO05D000984 2.2e-15 85.1 67 64.2
arahy.Tifrunner.gnm1.ann1.56PS60 Arachis hypogaea HOM05D000015 ORTHO05D000984 2.9e-15 84.7 69 63.8
VMungo1383G0564 Vigna mungo HOM05D000015 ORTHO05D000984 4.9e-15 84.0 67 61.2
arahy.Tifrunner.gnm1.ann1.CK6TQV Arachis hypogaea HOM05D000015 ORTHO05D000984 8.4e-15 83.2 64 62.5
arahy.Tifrunner.gnm1.ann1.V4CI2Q Arachis hypogaea HOM05D000015 ORTHO05D011289 8.4e-15 83.2 69 63.8
arahy.Tifrunner.gnm1.ann1.Q892TN Arachis hypogaea HOM05D000015 ORTHO05D000984 1.1e-14 82.8 67 61.2
arahy.Tifrunner.gnm1.ann1.R0F7P4 Arachis hypogaea HOM05D000015 ORTHO05D000984 1.1e-14 82.8 58 65.5
arahy.Tifrunner.gnm1.ann1.VC2YE4 Arachis hypogaea HOM05D000015 ORTHO05D000984 1.4e-14 82.4 64 62.5
arahy.Tifrunner.gnm1.ann1.FY0VUL Arachis hypogaea HOM05D000015 ORTHO05D000984 1.9e-14 82.0 67 61.2
TPR.G38842 Trifolium pratense HOM05D000015 ORTHO05D011289 1.9e-14 82.0 70 60.0
TPR.G39592 Trifolium pratense HOM05D000015 ORTHO05D011289 2.4e-14 81.6 67 62.7
arahy.Tifrunner.gnm1.ann1.DGX5BP Arachis hypogaea HOM05D000015 ORTHO05D000984 3.2e-14 81.3 59 66.1
arahy.Tifrunner.gnm1.ann1.GHD56K Arachis hypogaea HOM05D000015 ORTHO05D000984 5.5e-14 80.5 57 66.7
arahy.Tifrunner.gnm1.ann1.6S4II0 Arachis hypogaea HOM05D000015 ORTHO05D000984 9.3e-14 79.7 57 66.7
arahy.Tifrunner.gnm1.ann1.21U9AI Arachis hypogaea HOM05D000015 ORTHO05D000984 2.7e-13 78.2 57 64.9
arahy.Tifrunner.gnm1.ann1.48D0S2 Arachis hypogaea HOM05D000015 ORTHO05D000984 2.7e-13 78.2 68 57.4
arahy.Tifrunner.gnm1.ann1.AXV5KN Arachis hypogaea HOM05D000015 ORTHO05D000984 2.7e-13 78.2 70 58.6
arahy.Tifrunner.gnm1.ann1.EQE0RA Arachis hypogaea HOM05D000015 ORTHO05D000984 2.7e-13 78.2 70 58.6
Medtr7g081380 Medicago truncatula HOM05D000015 ORTHO05D000984 4.6e-13 77.4 52 67.3
Lj1g0009533 Lotus japonicus HOM05D000015 ORTHO05D000984 1.0e-12 76.3 67 56.7
arahy.Tifrunner.gnm1.ann1.1U7G5V Arachis hypogaea HOM05D000015 ORTHO05D000984 2.3e-12 75.1 68 55.9
Lj1g0026842 Lotus japonicus HOM05D000015 ORTHO05D000984 1.5e-11 72.4 67 56.7
Lalb_Chr03g0040451 Lupinus albus HOM05D000015 ORTHO05D011289 2.5e-11 71.6 67 52.2
Lalb_Chr19g0126491 Lupinus albus HOM05D000015 ORTHO05D000984 1.3e-10 69.3 67 52.2
TPR.G32095 Trifolium pratense HOM05D000015 ORTHO05D000984 1.3e-10 69.3 61 52.5
Lalb_Chr17g0347301 Lupinus albus HOM05D000015 ORTHO05D000984 2.1e-10 68.6 61 52.5
Medtr5g096750 Medicago truncatula HOM05D000015 ORTHO05D000984 2.8e-10 68.2 63 54.0
Ca_06097_v3 Cicer arietinum L. HOM05D000015 ORTHO05D000984 4.8e-10 67.4 61 50.8
Phvul.008G213300 Phaseolus vulgaris HOM05D000015 ORTHO05D000984 4.8e-10 67.4 62 48.4
Medtr4g103400 Medicago truncatula HOM05D000015 ORTHO05D000984 6.2e-10 67.0 61 55.7
Medtr5g085690 Medicago truncatula HOM05D000015 ORTHO05D000984 6.2e-10 67.0 62 51.6
TPR.G17929 Trifolium pratense HOM05D000015 ORTHO05D000984 1.1e-09 66.2 62 51.6
Glyma.14G048000 Glycine max HOM05D000015 ORTHO05D000984 1.4e-09 65.9 62 50.0
Psat0s2607g0080 Pisum sativum HOM05D000015 ORTHO05D000984 1.4e-09 65.9 59 57.6
Ca_06423_v3 Cicer arietinum L. HOM05D000015 ORTHO05D000984 2.4e-09 65.1 62 54.8
Glyma.14G047800 Glycine max HOM05D000015 ORTHO05D000984 2.4e-09 65.1 61 50.8
MELO3C014071.2 Cucumis melo HOM05D000015 ORTHO05D000984 3.1e-09 64.7 57 57.9
Duzib170G0252 Durio zibethinus HOM05D000015 ORTHO05D000984 3.1e-09 64.7 51 58.8
arahy.Tifrunner.gnm1.ann1.T9L28V Arachis hypogaea HOM05D000015 ORTHO05D000984 4.0e-09 64.3 57 59.6
Lj1g0003437 Lotus japonicus HOM05D000015 ORTHO05D000984 4.0e-09 64.3 36 77.8
Medtr3g061110 Medicago truncatula HOM05D000015 ORTHO05D000984 4.0e-09 64.3 56 50.0
LjContig00029g0027880 Lotus japonicus HOM05D000015 ORTHO05D000984 5.3e-09 63.9 54 63.0
Medtr4g103490 Medicago truncatula HOM05D000015 ORTHO05D000984 6.9e-09 63.5 61 49.2
TPR.G19234 Trifolium pratense HOM05D000015 ORTHO05D000984 9.0e-09 63.2 64 51.6
Eucgr.F03662 Eucalyptus grandis HOM05D000015 ORTHO05D000984 1.2e-08 62.8 58 56.9
FvH4_3g42350 Fragaria vesca HOM05D000015 ORTHO05D000984 1.2e-08 62.8 56 58.9
Glyma.14G048200 Glycine max HOM05D000015 ORTHO05D000984 1.2e-08 62.8 62 45.2
GSVIVG01014788001 Vitis vinifera HOM05D000015 ORTHO05D000984 1.5e-08 62.4 70 50.0
FAN16G1705 Fragaria x ananassa HOM05D000015 ORTHO05D000984 2.0e-08 62.0 38 76.3
FAN21G1921 Fragaria x ananassa HOM05D000015 ORTHO05D000984 2.6e-08 61.6 53 64.2
CANSAT11G1609 Cannabis sativa HOM05D000015 ORTHO05D000984 4.5e-08 60.8 53 52.8
TPR.G1315 Trifolium pratense HOM05D000015 ORTHO05D000984 4.5e-08 60.8 65 52.3
Psat4g065720 Pisum sativum HOM05D000015 ORTHO05D000984 5.8e-08 60.5 59 50.8
Gorai.004G034100 Gossypium raimondii HOM05D000015 ORTHO05D000984 7.6e-08 60.1 63 47.6
SalBow8G4745 Salvia bowleyana HOM05D000015 ORTHO05D000984 7.6e-08 60.1 55 54.5
SalBow8G5451 Salvia bowleyana HOM05D000015 ORTHO05D000984 7.6e-08 60.1 55 54.5
Migut.M00519 Erythranthe guttata HOM05D000015 ORTHO05D000984 1.0e-07 59.7 58 50.0
Gohir.A08G025600 Gossypium hirsutum HOM05D000015 ORTHO05D000984 1.0e-07 59.7 63 47.6
Gohir.D08G036100 Gossypium hirsutum HOM05D000015 ORTHO05D000984 1.0e-07 59.7 62 48.4
Lj4g0026292 Lotus japonicus HOM05D000015 ORTHO05D000984 1.0e-07 59.7 63 47.6
Phvul.008G213000 Phaseolus vulgaris HOM05D000015 ORTHO05D000984 1.0e-07 59.7 61 45.9
Medtr4g103480 Medicago truncatula HOM05D000015 ORTHO05D000984 1.3e-07 59.3 37 67.6
Haze_12573 Corylus avellana HOM05D000015 ORTHO05D000984 1.7e-07 58.9 61 49.2
Eucgr.F03664 Eucalyptus grandis HOM05D000015 ORTHO05D000984 1.7e-07 58.9 58 53.4
FAN11G2933 Fragaria x ananassa HOM05D000015 ORTHO05D000984 1.7e-07 58.9 35 77.1
FAN16G1825 Fragaria x ananassa HOM05D000015 ORTHO05D000984 1.7e-07 58.9 35 77.1
FAN21G3456 Fragaria x ananassa HOM05D000015 ORTHO05D000984 1.7e-07 58.9 35 77.1
FAN25G1925 Fragaria x ananassa HOM05D000015 ORTHO05D000984 1.7e-07 58.9 35 77.1
Medtr4g103450 Medicago truncatula HOM05D000015 ORTHO05D000984 1.7e-07 58.9 35 71.4
Duzib213G0245 Durio zibethinus HOM05D000015 ORTHO05D000984 2.2e-07 58.5 56 50.0
Aqoxy4G01206 Aquilegia oxysepala HOM05D000015 ORTHO05D000984 2.9e-07 58.2 60 51.7
CANSAT11G1624 Cannabis sativa HOM05D000015 ORTHO05D000984 2.9e-07 58.2 57 54.4
Psat2g005680 Pisum sativum HOM05D000015 ORTHO05D000984 2.9e-07 58.2 67 47.8
Glyma.17G130000 Glycine max HOM05D000015 ORTHO05D000984 3.8e-07 57.8 61 42.6
Thecc.07G005600 Theobroma cacao HOM05D000015 ORTHO05D000984 3.8e-07 57.8 60 53.3
TPR.G19220 Trifolium pratense HOM05D000015 ORTHO05D011289 3.8e-07 57.8 62 48.4
Dinv21328 Davidia involucrata HOM05D000015 ORTHO05D000984 4.9e-07 57.4 59 54.2
MBI18_g35845_MAGBIO Magnolia biondii HOM05D000015 ORTHO05D000984 4.9e-07 57.4 38 60.5
Eucgr.F03663 Eucalyptus grandis HOM05D000015 ORTHO05D000984 6.5e-07 57.0 51 52.9
Phvul.003G210900 Phaseolus vulgaris HOM05D000015 ORTHO05D000984 6.5e-07 57.0 53 52.8
PGR031G1772 Punica granatum HOM05D000015 ORTHO05D000984 6.5e-07 57.0 64 50.0
TWI39G0902 Tripterygium wilfordii HOM05D000015 ORTHO05D000984 6.5e-07 57.0 61 49.2
TWI60G1548 Tripterygium wilfordii HOM05D000015 ORTHO05D020996 6.5e-07 57.0 55 49.1
CSS0008577 Camellia sinensis var. sinensis HOM05D000015 ORTHO05D000984 8.4e-07 56.6 57 47.4
CSS0017603 Camellia sinensis var. sinensis HOM05D000015 ORTHO05D000984 8.4e-07 56.6 57 47.4
Glyma.04G017500 Glycine max HOM05D001852 ORTHO05D001989 8.4e-07 56.6 70 45.7
Gohir.D05G386400 Gossypium hirsutum HOM05D000015 ORTHO05D000984 8.4e-07 56.6 52 50.0
Gorai.009G453100 Gossypium raimondii HOM05D000015 ORTHO05D000984 8.4e-07 56.6 52 50.0
QL08p001676 Quercus lobata HOM05D000015 ORTHO05D000984 8.4e-07 56.6 59 49.2
CDE05G0230 Ceratophyllum demersum HOM05D000015 ORTHO05D000984 1.1e-06 56.2 67 44.8
Gohir.A04G003300 Gossypium hirsutum HOM05D000015 ORTHO05D000984 1.1e-06 56.2 52 50.0
PSO541G6005 Papaver somniferum HOM05D000015 ORTHO05D000984 1.1e-06 56.2 58 50.0
Peaxi162Scf00122g02122 Petunia axillaris HOM05D000015 ORTHO05D000984 1.1e-06 56.2 67 44.8
Sed0012718 Sechium edule HOM05D000015 ORTHO05D000984 1.1e-06 56.2 62 43.5
SGA_v2.0_scaffold70G23604 Striga asiatica HOM05D000015 ORTHO05D000984 1.1e-06 56.2 61 49.2
TWI38G1358 Tripterygium wilfordii HOM05D000015 ORTHO05D000984 1.1e-06 56.2 53 50.9
CANSAT11G2342 Cannabis sativa HOM05D000015 ORTHO05D000984 1.4e-06 55.8 66 45.5
Manes.12G067800 Manihot esculenta HOM05D000015 ORTHO05D000984 1.4e-06 55.8 61 50.8
VMungo0647G0421 Vigna mungo HOM05D000015 ORTHO05D000984 1.4e-06 55.8 61 42.6
GSVIVG01030138001 Vitis vinifera HOM05D000015 ORTHO05D000984 1.4e-06 55.8 66 48.5
Aqoxy3G02958 Aquilegia oxysepala HOM05D000015 ORTHO05D000984 2.5e-06 55.1 53 50.9
Prupe.6G031400 Prunus persica HOM05D000015 ORTHO05D000984 2.5e-06 55.1 67 49.3
RcHm_v2.0_Chr5g0075241 Rosa chinensis HOM05D000015 ORTHO05D000984 2.5e-06 55.1 62 48.4
RcHm_v2.0_Chr5g0075251 Rosa chinensis HOM05D000015 ORTHO05D000984 2.5e-06 55.1 35 71.4
ClCG10G004070 Citrullus lanatus HOM05D000015 ORTHO05D150266 3.2e-06 54.7 56 50.0
ClCG10G003910 Citrullus lanatus HOM05D000015 ORTHO05D011289 4.2e-06 54.3 56 50.0
Eucgr.F03665 Eucalyptus grandis HOM05D000015 ORTHO05D000984 4.2e-06 54.3 65 44.6
Gohir.A07G193900 Gossypium hirsutum HOM05D000015 ORTHO05D000984 4.2e-06 54.3 50 50.0
Gohir.D07G200000 Gossypium hirsutum HOM05D000015 ORTHO05D000984 4.2e-06 54.3 50 48.0
Gorai.001G224300 Gossypium raimondii HOM05D000015 ORTHO05D000984 4.2e-06 54.3 50 48.0
Psat4g062160 Pisum sativum HOM05D000015 ORTHO05D000984 4.2e-06 54.3 59 47.5
CDE05G1656 Ceratophyllum demersum HOM05D037807 ORTHO05D011289 5.5e-06 53.9 35 65.7
COL.COLO4_07758 Corchorus olitorius HOM05D000015 ORTHO05D000984 5.5e-06 53.9 35 71.4
Haze_09890 Corylus avellana HOM05D000015 ORTHO05D000984 5.5e-06 53.9 56 50.0
Haze_12580 Corylus avellana HOM05D000015 ORTHO05D011289 5.5e-06 53.9 35 62.9
MELO3C014076.2 Cucumis melo HOM05D000015 ORTHO05D000984 5.5e-06 53.9 35 65.7
Ciclev10014355m.g Citrus clementina HOM05D000015 ORTHO05D000984 7.1e-06 53.5 63 46.0
COL.COLO4_19673 Corchorus olitorius HOM05D000015 ORTHO05D000984 7.1e-06 53.5 50 48.0
Hma1.2p1_0391F.1_g142730 Hydrangea macrophylla HOM05D000015 ORTHO05D000984 7.1e-06 53.5 61 42.6
PSO170G3749 Papaver somniferum HOM05D000015 ORTHO05D000984 7.1e-06 53.5 38 60.5
Potri.011G165900 Populus trichocarpa HOM05D000015 ORTHO05D000984 7.1e-06 53.5 46 52.2
SGA_v2.0_scaffold651G53364 Striga asiatica HOM05D000015 ORTHO05D000984 7.1e-06 53.5 50 50.0
Thecc.06G243100 Theobroma cacao HOM05D000015 ORTHO05D000984 7.1e-06 53.5 38 63.2
TAR627G0463 Trochodendron aralioides HOM05D000015 ORTHO05D000984 7.1e-06 53.5 52 46.2
Haze_09891 Corylus avellana HOM05D000015 ORTHO05D000984 9.3e-06 53.1 38 65.8
FvH4_3g42040 Fragaria vesca HOM05D000015 ORTHO05D000984 9.3e-06 53.1 62 46.8


User provided reference genes

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