Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40284 Trifolium pratense HOM05D002538 ORTHO05D003162 9.8e-63 243.4 135 100.0
TPR.G7247 Trifolium pratense HOM05D002538 ORTHO05D003162 8.3e-54 213.8 135 83.7
TPR.G14940 Trifolium pratense HOM05D002538 ORTHO05D003162 2.1e-20 102.8 150 56.0
Lj4g0011488 Lotus japonicus HOM05D002538 ORTHO05D003162 2.8e-17 92.4 150 44.7
Medtr4g088220 Medicago truncatula HOM05D002538 ORTHO05D003162 2.8e-17 92.4 149 44.3
Ca_18600_v3 Cicer arietinum L. HOM05D002538 ORTHO05D003162 5.3e-16 88.2 150 43.3
arahy.Tifrunner.gnm1.ann1.BNQL10 Arachis hypogaea HOM05D002538 ORTHO05D003162 1.2e-15 87.0 148 42.6
Lalb_Chr16g0384091 Lupinus albus HOM05D002538 ORTHO05D003162 5.8e-15 84.7 152 42.1
Lalb_Chr09g0327861 Lupinus albus HOM05D002538 ORTHO05D003162 7.6e-15 84.3 148 41.9
Atru.chr10.1782 Acer truncatum HOM05D002538 ORTHO05D003162 1.7e-14 83.2 150 42.0
Potri.004G049400 Populus trichocarpa HOM05D002538 ORTHO05D003162 1.7e-14 83.2 150 40.7
Sabra11G0040600 Salix brachista HOM05D002538 ORTHO05D003162 1.7e-14 83.2 150 40.7
MELO3C007254.2 Cucumis melo HOM05D002538 ORTHO05D003162 2.2e-14 82.8 152 39.5
Potri.011G058500 Populus trichocarpa HOM05D002538 ORTHO05D003162 2.2e-14 82.8 150 41.3
Atru.chr10.1781 Acer truncatum HOM05D002538 ORTHO05D003162 2.9e-14 82.4 150 41.3
Phvul.003G290500 Phaseolus vulgaris HOM05D002538 ORTHO05D003162 2.9e-14 82.4 150 41.3
Psat7g116720 Pisum sativum HOM05D002538 ORTHO05D003162 2.9e-14 82.4 150 48.7
Ciclev10014139m.g Citrus clementina HOM05D002538 ORTHO05D003162 3.8e-14 82.0 150 40.7
Eucgr.D00590 Eucalyptus grandis HOM05D002538 ORTHO05D003162 3.8e-14 82.0 148 41.2
ClCG00G002770 Citrullus lanatus HOM05D002538 ORTHO05D003162 4.9e-14 81.6 152 39.5
ClCG01G023320 Citrullus lanatus HOM05D002538 ORTHO05D003162 4.9e-14 81.6 152 39.5
Lalb_Chr15g0089661 Lupinus albus HOM05D002538 ORTHO05D003162 4.9e-14 81.6 150 47.3
Glyma.13G234600 Glycine max HOM05D002538 ORTHO05D003162 6.4e-14 81.3 147 49.0
Gohir.D06G135500 Gossypium hirsutum HOM05D002538 ORTHO05D003162 6.4e-14 81.3 148 39.9
THA.LOC104798407 Tarenaya hassleriana HOM05D002538 ORTHO05D003162 6.4e-14 81.3 147 41.5
Gohir.D10G028700 Gossypium hirsutum HOM05D002538 ORTHO05D003162 8.4e-14 80.9 148 41.2
CsaV3_6G050460 Cucumis sativus L. HOM05D002538 ORTHO05D003162 1.1e-13 80.5 148 39.9
Gorai.010G157500 Gossypium raimondii HOM05D002538 ORTHO05D003162 1.1e-13 80.5 148 39.9
Sed0021408 Sechium edule HOM05D002538 ORTHO05D003162 1.1e-13 80.5 148 39.2
Duzib160G0687 Durio zibethinus HOM05D002538 ORTHO05D003162 1.4e-13 80.1 148 39.9
Duzib192G0543 Durio zibethinus HOM05D002538 ORTHO05D003162 1.4e-13 80.1 146 39.7
Gorai.011G030500 Gossypium raimondii HOM05D002538 ORTHO05D003162 1.9e-13 79.7 148 40.5
TWI38G0418 Tripterygium wilfordii HOM05D002538 ORTHO05D003162 1.9e-13 79.7 147 47.6
Duzib235G1107 Durio zibethinus HOM05D002538 ORTHO05D003162 2.4e-13 79.3 148 39.9
Eucgr.C03068 Eucalyptus grandis HOM05D002538 ORTHO05D003162 2.4e-13 79.3 148 40.5
Manes.16G032600 Manihot esculenta HOM05D002538 ORTHO05D003162 2.4e-13 79.3 150 40.0
Sabra04G0031100 Salix brachista HOM05D002538 ORTHO05D003162 2.4e-13 79.3 150 39.3
Gohir.A06G127200 Gossypium hirsutum HOM05D002538 ORTHO05D003162 3.2e-13 79.0 148 39.2
Nn1g06401 Nelumbo nucifera HOM05D002538 ORTHO05D003162 3.2e-13 79.0 148 39.9
VMungo0540G0056 Vigna mungo HOM05D002538 ORTHO05D003162 4.2e-13 78.6 152 39.5
Thecc.06G180200 Theobroma cacao HOM05D002538 ORTHO05D003162 5.5e-13 78.2 148 39.2
CiPaw.09G064200 Carya illinoinensis HOM05D002538 ORTHO05D003162 7.1e-13 77.8 152 38.8
Cfa000535 Carpinus fangiana HOM05D002538 ORTHO05D003162 1.2e-12 77.0 148 39.2
Hund21205 Selenicereus undatus HOM05D002538 ORTHO05D003162 1.2e-12 77.0 147 39.5
CiPaw.10G053200 Carya illinoinensis HOM05D002538 ORTHO05D003162 1.6e-12 76.6 148 39.2
MBI06_g04404_MAGBIO Magnolia biondii HOM05D002538 ORTHO05D003162 1.6e-12 76.6 148 39.2
COL.COLO4_31408 Corchorus olitorius HOM05D002538 ORTHO05D003162 2.1e-12 76.3 152 38.2
Haze_06366 Corylus avellana HOM05D002538 ORTHO05D003162 2.1e-12 76.3 148 38.5
Gohir.A10G028300 Gossypium hirsutum HOM05D002538 ORTHO05D003162 2.1e-12 76.3 148 39.9
Sed0000642 Sechium edule HOM05D002538 ORTHO05D003162 2.7e-12 75.9 148 37.8
CANSAT35G0219 Cannabis sativa HOM05D002538 ORTHO05D003162 3.5e-12 75.5 152 37.5
Dinv17362 Davidia involucrata HOM05D002538 ORTHO05D003162 3.5e-12 75.5 140 38.6
Nn1g04247 Nelumbo nucifera HOM05D002538 ORTHO05D003162 4.6e-12 75.1 148 37.8
Cpa.g.sc1080.3 Carica papaya HOM05D002538 ORTHO05D003162 6.0e-12 74.7 148 37.8
TAR627G0078 Trochodendron aralioides HOM05D002538 ORTHO05D003162 6.0e-12 74.7 147 38.8
TAR627G0221 Trochodendron aralioides HOM05D002538 ORTHO05D003162 6.0e-12 74.7 147 38.8
vmacro03901 Vaccinium macrocarpon HOM05D002538 ORTHO05D003162 6.0e-12 74.7 154 36.4
GSVIVG01021122001 Vitis vinifera HOM05D002538 ORTHO05D003162 6.0e-12 74.7 150 38.7
ECA234G1452 Erigeron canadensis HOM05D002538 ORTHO05D003162 7.9e-12 74.3 148 37.8
MBI13_g03361_MAGBIO Magnolia biondii HOM05D002538 ORTHO05D003162 7.9e-12 74.3 147 38.8
Hma1.2p1_0206F.1_g087630 Hydrangea macrophylla HOM05D002538 ORTHO05D003162 1.0e-11 73.9 148 38.5
Phvul.006G181400 Phaseolus vulgaris HOM05D002538 ORTHO05D003162 1.3e-11 73.6 152 36.8
EL10Ac8g20445 Beta vulgaris HOM05D002538 ORTHO05D003162 1.8e-11 73.2 152 36.8
CDE09G0660 Ceratophyllum demersum HOM05D002538 ORTHO05D003162 1.8e-11 73.2 150 36.7
Potri.017G016800 Populus trichocarpa HOM05D002538 ORTHO05D003162 1.8e-11 73.2 150 38.0
HanXRQChr17g0564931 Helianthus annuus HOM05D002538 ORTHO05D003162 2.3e-11 72.8 147 37.4
CDE02G1050 Ceratophyllum demersum HOM05D002538 ORTHO05D003162 3.0e-11 72.4 150 38.0
Manes.17G050000 Manihot esculenta HOM05D002538 ORTHO05D003162 3.0e-11 72.4 152 43.4
Glyma.13G174200 Glycine max HOM05D002538 ORTHO05D003162 3.9e-11 72.0 148 39.2
QL05p042992 Quercus lobata HOM05D002538 ORTHO05D003162 3.9e-11 72.0 148 37.8
Hund23821 Selenicereus undatus HOM05D002538 ORTHO05D003162 3.9e-11 72.0 172 38.4
Sc17g0005890 Simmondsia chinensis HOM05D002538 ORTHO05D003162 3.9e-11 72.0 148 37.2
Migut.M01100 Erythranthe guttata HOM05D002538 ORTHO05D003162 6.7e-11 71.2 147 37.4
Thhalv10000755m.g Eutrema salsugineum HOM05D002538 ORTHO05D003162 6.7e-11 71.2 151 37.7
SGA_v2.0_scaffold16G07643 Striga asiatica HOM05D002538 ORTHO05D003162 6.7e-11 71.2 154 35.1
CSS0006869 Camellia sinensis var. sinensis HOM05D002538 ORTHO05D003162 8.7e-11 70.9 148 35.8
CSS0021581 Camellia sinensis var. sinensis HOM05D002538 ORTHO05D003162 8.7e-11 70.9 154 35.7
Aqoxy4G00604 Aquilegia oxysepala HOM05D002538 ORTHO05D003162 1.1e-10 70.5 150 36.0
AUR62031088 Chenopodium quinoa HOM05D002538 ORTHO05D003162 1.5e-10 70.1 147 36.1
Dinv40607 Davidia involucrata HOM05D002538 ORTHO05D003162 1.5e-10 70.1 148 35.8
CAN.G813.6 Capsicum annuum HOM05D002538 ORTHO05D003162 1.9e-10 69.7 147 36.1
ECA236G0316 Erigeron canadensis HOM05D002538 ORTHO05D003162 1.9e-10 69.7 150 34.7
PGR004G1187 Punica granatum HOM05D002538 ORTHO05D003162 1.9e-10 69.7 146 36.3
Solyc02g077600.3 Solanum lycopersicum HOM05D002538 ORTHO05D003162 1.9e-10 69.7 148 35.8
CAN.G529.62 Capsicum annuum HOM05D002538 ORTHO05D003162 2.5e-10 69.3 152 35.5
FAN21G0308 Fragaria x ananassa HOM05D002538 ORTHO05D003162 2.5e-10 69.3 150 38.0
Glyma.07G202100 Glycine max HOM05D002538 ORTHO05D003162 2.5e-10 69.3 148 38.5
Oeu012159.2 Olea europaea HOM05D002538 ORTHO05D003162 2.5e-10 69.3 146 37.0
Prupe.4G053400 Prunus persica HOM05D002538 ORTHO05D003162 2.5e-10 69.3 146 38.4
Sopen02g022500 Solanum pennellii HOM05D002538 ORTHO05D003162 2.5e-10 69.3 148 35.8
TAR626G1005 Trochodendron aralioides HOM05D002538 ORTHO05D003162 2.5e-10 69.3 148 35.8
CARHR175860 Cardamine hirsuta HOM05D002538 ORTHO05D003162 3.3e-10 68.9 148 36.5
Nitab4.5_0003315g0010 Nicotiana tabacum HOM05D002538 ORTHO05D003162 3.3e-10 68.9 147 35.4
Nitab4.5_0007082g0020 Nicotiana tabacum HOM05D002538 ORTHO05D003162 3.3e-10 68.9 148 35.8
Peaxi162Scf00490g00311 Petunia axillaris HOM05D002538 ORTHO05D003162 3.3e-10 68.9 148 35.1
Aa31LG9G6820 Aethionema arabicum HOM05D002538 ORTHO05D003162 4.3e-10 68.6 150 36.0
Carub.0008s0186 Capsella rubella HOM05D002538 ORTHO05D003162 4.3e-10 68.6 147 37.4
FAN25G0596 Fragaria x ananassa HOM05D002538 ORTHO05D003162 4.3e-10 68.6 148 36.5
Nitab4.5_0006826g0020 Nicotiana tabacum HOM05D002538 ORTHO05D003162 4.3e-10 68.6 147 34.7
Solyc10g008950.3 Solanum lycopersicum HOM05D002538 ORTHO05D003162 4.3e-10 68.6 147 36.1
Sopen10g004740 Solanum pennellii HOM05D002538 ORTHO05D003162 4.3e-10 68.6 147 36.1
Actinidia16575 Actinidia chinensis HOM05D002538 ORTHO05D003162 5.6e-10 68.2 148 34.5
Actinidia39481 Actinidia chinensis HOM05D002538 ORTHO05D003162 5.6e-10 68.2 148 35.1
Cc02_g14020 Coffea canephora HOM05D002538 ORTHO05D003162 7.4e-10 67.8 150 36.7
FvH4_3g08471 Fragaria vesca HOM05D002538 ORTHO05D003162 7.4e-10 67.8 148 36.5
FAN11G3059 Fragaria x ananassa HOM05D002538 ORTHO05D003162 7.4e-10 67.8 148 36.5
Nitab4.5_0002114g0140 Nicotiana tabacum HOM05D002538 ORTHO05D003162 7.4e-10 67.8 147 36.1
SalBow8G1315 Salvia bowleyana HOM05D002538 ORTHO05D003162 7.4e-10 67.8 148 35.1
SalBow8G4204 Salvia bowleyana HOM05D002538 ORTHO05D003162 7.4e-10 67.8 148 35.1
SGA_v2.0_scaffold309G48172 Striga asiatica HOM05D002538 ORTHO05D003162 7.4e-10 67.8 154 33.8
AL8G12440 Arabidopsis lyrata HOM05D002538 ORTHO05D003162 9.6e-10 67.4 150 35.3
MD05G1309600 Malus domestica HOM05D002538 ORTHO05D003162 9.6e-10 67.4 146 37.7
MD10G1288200 Malus domestica HOM05D002538 ORTHO05D003162 9.6e-10 67.4 146 37.7
Peaxi162Scf00099g00079 Petunia axillaris HOM05D002538 ORTHO05D003162 1.3e-09 67.0 148 35.1
Sabra17G0013000 Salix brachista HOM05D002538 ORTHO05D003162 1.3e-09 67.0 150 35.3
MSTRG.7364 Avicennia marina HOM05D002538 ORTHO05D003162 1.6e-09 66.6 149 34.9
HanXRQChr15g0480031 Helianthus annuus HOM05D002538 ORTHO05D003162 1.6e-09 66.6 148 35.8
RcHm_v2.0_Chr5g0009341 Rosa chinensis HOM05D002538 ORTHO05D003162 1.6e-09 66.6 148 36.5
AT5G46070 Arabidopsis thaliana HOM05D002538 ORTHO05D003162 2.1e-09 66.2 150 35.3
COL.COLO4_37677 Corchorus olitorius HOM05D002538 ORTHO05D003162 2.1e-09 66.2 150 39.3
PGSC0003DMG400022833 Solanum tuberosum HOM05D002538 ORTHO05D003162 2.1e-09 66.2 144 36.1
DCAR_028041 Daucus carota HOM05D002538 ORTHO05D003162 2.8e-09 65.9 144 35.4
Lsat_1_v5_gn_4_27980 Lactuca sativa HOM05D002538 ORTHO05D003162 2.8e-09 65.9 145 36.6
Nitab4.5_0001955g0010 Nicotiana tabacum HOM05D002538 ORTHO05D003162 2.8e-09 65.9 155 35.5
PSO210G7643 Papaver somniferum HOM05D002538 ORTHO05D003162 2.8e-09 65.9 152 34.9
PSO675G8802 Papaver somniferum HOM05D002538 ORTHO05D003162 3.7e-09 65.5 150 34.0
Rhsim02G0135500 Rhododendron simsii HOM05D002538 ORTHO05D003162 3.7e-09 65.5 148 34.5
BcaC04g21734 Brassica carinata HOM05D002538 ORTHO05D003162 4.8e-09 65.1 148 36.5
A09p22060 Brassica napus HOM05D002538 ORTHO05D003162 4.8e-09 65.1 152 35.5
C09p28210 Brassica napus HOM05D002538 ORTHO05D003162 4.8e-09 65.1 148 36.5
BolC9t55694H Brassica oleracea HOM05D002538 ORTHO05D003162 4.8e-09 65.1 148 36.5
BraA09t37812Z Brassica rapa HOM05D002538 ORTHO05D003162 4.8e-09 65.1 148 36.5
ATR0602G206 Amborella trichopoda HOM05D002538 ORTHO05D003162 6.2e-09 64.7 152 33.6
Rhsim13G0180600 Rhododendron simsii HOM05D002538 ORTHO05D003162 6.2e-09 64.7 148 34.5
unitig_27.g24978 Utricularia gibba HOM05D002538 ORTHO05D003162 6.2e-09 64.7 148 35.1
Zm00001eb235320 Zea mays HOM05D002538 ORTHO05D003162 6.2e-09 64.7 147 32.7
BcaB07g30857 Brassica carinata HOM05D002538 ORTHO05D003162 8.2e-09 64.3 148 35.8
AUR62014880 Chenopodium quinoa HOM05D002538 ORTHO05D003162 8.2e-09 64.3 147 34.0
Lj2C293T13 Lonicera japonica HOM05D002538 ORTHO05D003162 8.2e-09 64.3 148 34.5
Hund18210 Selenicereus undatus HOM05D002538 ORTHO05D003162 8.2e-09 64.3 167 31.7
vmacro15938 Vaccinium macrocarpon HOM05D002538 ORTHO05D003162 8.2e-09 64.3 148 34.5
DCAR_024895 Daucus carota HOM05D002538 ORTHO05D003162 1.1e-08 63.9 148 33.8
PSO541G2371 Papaver somniferum HOM05D002538 ORTHO05D003162 1.1e-08 63.9 150 32.7
PSO832G0299 Papaver somniferum HOM05D002538 ORTHO05D003162 1.4e-08 63.5 150 34.7
Sp2g10920 Schrenkiella parvula HOM05D002538 ORTHO05D003162 1.4e-08 63.5 148 35.8
Ah.14g089710 Amaranthus hybridus HOM05D002538 ORTHO05D003162 1.8e-08 63.2 146 34.9
arahy.Tifrunner.gnm1.ann1.T00U8Q Arachis hypogaea HOM05D002538 ORTHO05D003162 1.8e-08 63.2 77 49.4
Zm00001eb295820 Zea mays HOM05D002538 ORTHO05D003162 4.0e-08 62.0 146 32.9
Lj1C1200G23 Lonicera japonica HOM05D002538 ORTHO05D003162 5.3e-08 61.6 148 33.8
TAR624G1203 Trochodendron aralioides HOM05D002538 ORTHO05D003162 6.9e-08 61.2 154 35.1
HPP92_020202 Vanilla planifolia HOM05D002538 ORTHO05D003162 9.0e-08 60.8 150 33.3
BcaC06g31502 Brassica carinata HOM05D002538 ORTHO05D003162 1.5e-07 60.1 149 34.2
Lsat_1_v5_gn_7_30920 Lactuca sativa HOM05D002538 ORTHO05D003162 2.0e-07 59.7 148 32.4
EL10Ac7g17568 Beta vulgaris HOM05D002538 ORTHO05D003162 2.6e-07 59.3 152 32.9
SEGI_39920 Sequoiadendron giganteum HOM05D002538 ORTHO05D003162 2.6e-07 59.3 148 40.5
Pp3c12_11340 Physcomitrium patens HOM05D002538 ORTHO05D003162 3.4e-07 58.9 148 32.4
C07p29240 Brassica napus HOM05D002538 ORTHO05D003162 4.5e-07 58.5 147 33.3
BolC7t43466H Brassica oleracea HOM05D002538 ORTHO05D003162 4.5e-07 58.5 147 33.3
A06p46220 Brassica napus HOM05D002538 ORTHO05D003162 1.0e-06 57.4 144 34.0
BraA06t27486Z Brassica rapa HOM05D002538 ORTHO05D003162 1.0e-06 57.4 144 34.0
Ah.15g093000 Amaranthus hybridus HOM05D002538 ORTHO05D003162 1.3e-06 57.0 146 30.8
Os02g0307000 Oryza sativa ssp. japonica HOM05D002538 ORTHO05D003162 1.3e-06 57.0 146 30.1
TPR.G108 Trifolium pratense HOM05D002538 ORTHO05D003162 1.7e-06 56.6 27 100.0
unitig_699.g19113 Utricularia gibba HOM05D002538 ORTHO05D003162 2.2e-06 56.2 77 44.2
SMO137G0049 Selaginella moellendorffii HOM05D002538 ORTHO05D003162 2.9e-06 55.8 147 31.3


User provided reference genes

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