Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40260 Trifolium pratense HOM05D006858 ORTHO05D008767 3.9e-125 451.4 223 100.0
Medtr1g033960 Medicago truncatula HOM05D006858 ORTHO05D008767 2.5e-23 113.2 120 51.7
Ca_12460_v3 Cicer arietinum L. HOM05D006858 ORTHO05D008767 3.3e-23 112.8 119 52.1
Ca_29767_v3 Cicer arietinum L. HOM05D006858 ORTHO05D008767 3.3e-23 112.8 119 52.1
Lj2g0007949 Lotus japonicus HOM05D006858 ORTHO05D008767 4.3e-23 112.5 119 54.6
VMungo1215G0504 Vigna mungo HOM05D006858 ORTHO05D008767 5.6e-23 112.1 116 49.1
Lalb_Chr10g0095481 Lupinus albus HOM05D006858 ORTHO05D008767 3.6e-22 109.4 120 50.0
BcaB06g27362 Brassica carinata HOM05D006858 ORTHO05D008767 8.1e-22 108.2 115 50.4
arahy.Tifrunner.gnm1.ann1.U9N0YZ Arachis hypogaea HOM05D006858 ORTHO05D008767 4.0e-21 105.9 120 49.2
Phvul.003G012700 Phaseolus vulgaris HOM05D006858 ORTHO05D008767 4.0e-21 105.9 120 49.2
CANSAT25G3187 Cannabis sativa HOM05D006858 ORTHO05D008767 1.2e-20 104.4 120 48.3
Psat6g096520 Pisum sativum HOM05D006858 ORTHO05D008767 1.5e-20 104.0 119 47.9
TPR.G11140 Trifolium pratense HOM05D006858 ORTHO05D008767 1.5e-20 104.0 119 48.7
AT5G39710 Arabidopsis thaliana HOM05D006858 ORTHO05D008767 2.6e-20 103.2 120 46.7
C04p46110 Brassica napus HOM05D006858 ORTHO05D008767 2.6e-20 103.2 115 49.6
BolC4t26195H Brassica oleracea HOM05D006858 ORTHO05D008767 2.6e-20 103.2 115 49.6
Thhalv10027654m.g Eutrema salsugineum HOM05D006858 ORTHO05D008767 4.5e-20 102.4 120 47.5
arahy.Tifrunner.gnm1.ann1.3PJ361 Arachis hypogaea HOM05D006858 ORTHO05D008767 5.8e-20 102.1 120 47.5
QL11p037400 Quercus lobata HOM05D006858 ORTHO05D008767 5.8e-20 102.1 120 48.3
Prupe.7G039700 Prunus persica HOM05D006858 ORTHO05D008767 7.6e-20 101.7 120 50.0
Aa31LG9G16400 Aethionema arabicum HOM05D006858 ORTHO05D008767 9.9e-20 101.3 120 46.7
Sp7g02300 Schrenkiella parvula HOM05D006858 ORTHO05D008767 1.3e-19 100.9 120 47.5
Duzib132G0284 Durio zibethinus HOM05D006858 ORTHO05D008767 2.2e-19 100.1 120 46.7
Glyma.20G010100 Glycine max HOM05D006858 ORTHO05D008767 3.8e-19 99.4 120 46.7
RcHm_v2.0_Chr6g0258901 Rosa chinensis HOM05D006858 ORTHO05D008767 3.8e-19 99.4 115 50.4
Cfa005452 Carpinus fangiana HOM05D006858 ORTHO05D008767 8.4e-19 98.2 120 48.3
TWI31G0517 Tripterygium wilfordii HOM05D006858 ORTHO05D008767 8.4e-19 98.2 120 46.7
FvH4_2g06720 Fragaria vesca HOM05D006858 ORTHO05D008767 1.1e-18 97.8 115 48.7
FAN24G1409 Fragaria x ananassa HOM05D006858 ORTHO05D008767 1.1e-18 97.8 115 48.7
MD10G1090200 Malus domestica HOM05D006858 ORTHO05D008767 1.1e-18 97.8 120 47.5
Manes.17G093600 Manihot esculenta HOM05D006858 ORTHO05D008767 1.1e-18 97.8 115 46.1
Rhsim05G0081400 Rhododendron simsii HOM05D006858 ORTHO05D008767 1.1e-18 97.8 120 44.2
Atru.chr5.2775 Acer truncatum HOM05D006858 ORTHO05D008767 1.9e-18 97.1 120 49.2
FAN20G2333 Fragaria x ananassa HOM05D006858 ORTHO05D008767 2.4e-18 96.7 115 49.6
FAN27G2753 Fragaria x ananassa HOM05D006858 ORTHO05D008767 2.4e-18 96.7 115 48.7
CiPaw.06G142100 Carya illinoinensis HOM05D006858 ORTHO05D008767 3.2e-18 96.3 120 48.3
Gohir.D02G212500 Gossypium hirsutum HOM05D006858 ORTHO05D008767 5.5e-18 95.5 111 45.9
Gorai.005G240500 Gossypium raimondii HOM05D006858 ORTHO05D008767 5.5e-18 95.5 111 45.9
Potri.009G105600 Populus trichocarpa HOM05D006858 ORTHO05D008767 5.5e-18 95.5 115 46.1
FAN15G2218 Fragaria x ananassa HOM05D006858 ORTHO05D008767 7.1e-18 95.1 115 47.8
Sabra09G0080800 Salix brachista HOM05D006858 ORTHO05D008767 7.1e-18 95.1 115 46.1
Thecc.02G097300 Theobroma cacao HOM05D006858 ORTHO05D008767 7.1e-18 95.1 126 41.3
Haze_01905 Corylus avellana HOM05D006858 ORTHO05D008767 2.1e-17 93.6 120 47.5
Gohir.A03G191600 Gossypium hirsutum HOM05D006858 ORTHO05D008767 2.1e-17 93.6 111 45.0
DCAR_022059 Daucus carota HOM05D006858 ORTHO05D008767 3.5e-17 92.8 120 43.3
AUR62016628 Chenopodium quinoa HOM05D006858 ORTHO05D008767 6.0e-17 92.0 114 45.6
PGR142G0738 Punica granatum HOM05D006858 ORTHO05D008767 6.0e-17 92.0 115 45.2
THA.LOC104804370 Tarenaya hassleriana HOM05D006858 ORTHO05D008767 6.0e-17 92.0 119 44.5
A04p12420 Brassica napus HOM05D006858 ORTHO05D008767 7.9e-17 91.7 115 46.1
BraA04t16905Z Brassica rapa HOM05D006858 ORTHO05D008767 7.9e-17 91.7 115 46.1
vmacro13394 Vaccinium macrocarpon HOM05D006858 ORTHO05D008767 1.0e-16 91.3 118 44.1
GSVIVG01031787001 Vitis vinifera HOM05D006858 ORTHO05D008767 1.0e-16 91.3 120 43.3
AUR62011433 Chenopodium quinoa HOM05D006858 ORTHO05D008767 2.3e-16 90.1 114 44.7
EL10Ac9g21827 Beta vulgaris HOM05D006858 ORTHO05D008767 3.0e-16 89.7 115 45.2
ECA234G1772 Erigeron canadensis HOM05D006858 ORTHO05D008767 3.0e-16 89.7 120 45.0
HanXRQChr10g0303231 Helianthus annuus HOM05D006858 ORTHO05D008767 5.1e-16 89.0 115 45.2
Lsat_1_v5_gn_5_113361 Lactuca sativa HOM05D006858 ORTHO05D008767 5.1e-16 89.0 115 45.2
CSS0006454 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 6.7e-16 88.6 120 42.5
CSS0049463 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 6.7e-16 88.6 120 42.5
Aqoxy6G01416 Aquilegia oxysepala HOM05D006858 ORTHO05D008767 8.7e-16 88.2 111 44.1
TAR628G1172 Trochodendron aralioides HOM05D006858 ORTHO05D008767 8.7e-16 88.2 122 40.2
Ah.01g020130 Amaranthus hybridus HOM05D006858 ORTHO05D008767 2.5e-15 86.7 115 41.7
Sc08g0000040 Simmondsia chinensis HOM05D006858 ORTHO05D008767 2.5e-15 86.7 115 41.7
Ciclev10028118m.g Citrus clementina HOM05D006858 ORTHO05D008767 9.6e-15 84.7 116 39.7
Eucgr.I01171 Eucalyptus grandis HOM05D006858 ORTHO05D008767 2.1e-14 83.6 115 40.0
Carub.0007s3617 Capsella rubella HOM05D006858 ORTHO05D008767 3.7e-14 82.8 93 45.2
ClCG02G005770 Citrullus lanatus HOM05D006858 ORTHO05D008767 1.4e-13 80.9 115 40.9
Dinv23584 Davidia involucrata HOM05D006858 ORTHO05D008767 2.4e-13 80.1 111 41.4
Sed0026070 Sechium edule HOM05D006858 ORTHO05D008767 2.4e-13 80.1 116 42.2
Nn4g22909 Nelumbo nucifera HOM05D006858 ORTHO05D008767 3.1e-13 79.7 110 39.1
CsaV3_7G008750 Cucumis sativus L. HOM05D006858 ORTHO05D008767 3.4e-12 76.3 111 38.7
Migut.N01200 Erythranthe guttata HOM05D006858 ORTHO05D008767 5.8e-12 75.5 115 36.5
Actinidia17852 Actinidia chinensis HOM05D006858 ORTHO05D008767 1.7e-11 73.9 116 37.9
CAN.G322.19 Capsicum annuum HOM05D006858 ORTHO05D008767 1.7e-11 73.9 116 38.8
SHI05381 Sapria himalayana HOM05D006858 ORTHO05D008767 1.7e-11 73.9 124 35.5
Sopen01g050630 Solanum pennellii HOM05D006858 ORTHO05D008767 1.7e-11 73.9 115 37.4
PGSC0003DMG401025809 Solanum tuberosum HOM05D006858 ORTHO05D008767 1.7e-11 73.9 115 37.4
Nitab4.5_0005583g0010 Nicotiana tabacum HOM05D006858 ORTHO05D008767 2.2e-11 73.6 115 37.4
Oeu013687.1 Olea europaea HOM05D006858 ORTHO05D008767 2.9e-11 73.2 104 36.5
Nitab4.5_0004334g0100 Nicotiana tabacum HOM05D006858 ORTHO05D008767 6.5e-11 72.0 115 37.4
MELO3C018437.2 Cucumis melo HOM05D006858 ORTHO05D008767 8.4e-11 71.6 115 37.4
Peaxi162Scf00016g00164 Petunia axillaris HOM05D006858 ORTHO05D008767 8.4e-11 71.6 115 38.3
Zm00001eb376700 Zea mays HOM05D006858 ORTHO05D008767 1.2e-09 67.8 109 37.6
Prupe.8G118500 Prunus persica HOM05D006858 ORTHO05D008767 1.6e-09 67.4 92 46.7
Os06g0152500 Oryza sativa ssp. japonica HOM05D006858 ORTHO05D008767 2.1e-09 67.0 109 37.6
TPR.G6774 Trifolium pratense HOM05D006858 ORTHO05D008767 4.6e-09 65.9 39 87.2
SGA_v2.0_scaffold13G06572 Striga asiatica HOM05D006858 ORTHO05D008767 7.9e-09 65.1 104 33.7
RcHm_v2.0_Chr7g0233241 Rosa chinensis HOM05D006858 ORTHO05D008767 1.3e-08 64.3 111 40.5
COL.COLO4_32688 Corchorus olitorius HOM05D006858 ORTHO05D008767 3.9e-08 62.8 131 32.8
PGSC0003DMG402025785 Solanum tuberosum HOM05D006858 ORTHO05D008767 6.7e-08 62.0 115 33.0
Lj9A359T74 Lonicera japonica HOM05D006858 ORTHO05D008767 1.1e-07 61.2 116 32.8
CDE09G0572 Ceratophyllum demersum HOM05D006858 ORTHO05D008767 1.5e-07 60.8 115 36.5
TAR633G1647 Trochodendron aralioides HOM05D006858 ORTHO05D008767 6.3e-06 55.5 122 30.3


User provided reference genes

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