Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4016 Trifolium pratense HOM05D005897 ORTHO05D007128 6.9e-104 380.6 182 100.0
Medtr2g043710 Medicago truncatula HOM05D005897 ORTHO05D007128 1.8e-67 259.6 196 66.8
Ca_05224_v3 Cicer arietinum L. HOM05D005897 ORTHO05D007128 2.8e-60 235.7 184 67.9
Psat1g137480 Pisum sativum HOM05D005897 ORTHO05D007128 5.2e-59 231.5 187 66.3
Lj6g0011186 Lotus japonicus HOM05D005897 ORTHO05D007128 2.1e-44 183.0 184 56.0
VMungo1309G2633 Vigna mungo HOM05D005897 ORTHO05D007128 2.0e-42 176.4 174 55.2
Glyma.15G181800 Glycine max HOM05D005897 ORTHO05D007128 1.7e-41 173.3 186 54.3
Phvul.009G224300 Phaseolus vulgaris HOM05D005897 ORTHO05D007128 2.9e-41 172.6 175 52.0
Glyma.09G073050 Glycine max HOM05D005897 ORTHO05D007128 8.1e-36 154.5 190 49.5
Gohir.D05G036900 Gossypium hirsutum HOM05D005897 ORTHO05D007128 8.6e-30 134.4 193 42.0
Gohir.A05G035400 Gossypium hirsutum HOM05D005897 ORTHO05D007128 1.9e-29 133.3 196 41.3
Manes.16G091700 Manihot esculenta HOM05D005897 ORTHO05D007128 3.3e-29 132.5 203 38.4
COL.COLO4_21221 Corchorus olitorius HOM05D005897 ORTHO05D007128 4.3e-29 132.1 199 38.2
Gorai.009G037400 Gossypium raimondii HOM05D005897 ORTHO05D007128 4.3e-29 132.1 193 41.5
MD15G1222300 Malus domestica HOM05D005897 ORTHO05D007128 5.6e-29 131.7 197 43.1
TWI34G1248 Tripterygium wilfordii HOM05D005897 ORTHO05D007128 1.1e-27 127.5 192 39.1
TWI32G0373 Tripterygium wilfordii HOM05D005897 ORTHO05D007128 1.8e-27 126.7 184 41.3
Lalb_Chr11g0074041 Lupinus albus HOM05D005897 ORTHO05D007128 2.4e-27 126.3 180 45.0
VMungo1215G2819 Vigna mungo HOM05D005897 ORTHO05D007128 3.1e-27 125.9 185 38.4
Aa31LG4G13050 Aethionema arabicum HOM05D005897 ORTHO05D007128 2.0e-26 123.2 186 38.7
Glyma.13G113000 Glycine max HOM05D005897 ORTHO05D007128 7.6e-26 121.3 172 39.5
Thecc.09G071600 Theobroma cacao HOM05D005897 ORTHO05D007128 1.3e-25 120.6 200 39.5
arahy.Tifrunner.gnm1.ann1.K6A74J Arachis hypogaea HOM05D005897 ORTHO05D007128 1.7e-25 120.2 177 41.8
Lj4g0017959 Lotus japonicus HOM05D005897 ORTHO05D007128 1.7e-25 120.2 181 43.1
Gorai.010G091500 Gossypium raimondii HOM05D005897 ORTHO05D007128 2.2e-25 119.8 195 43.1
Duzib168G1262 Durio zibethinus HOM05D005897 ORTHO05D007128 2.9e-25 119.4 195 42.1
Haze_26054 Corylus avellana HOM05D005897 ORTHO05D007128 3.8e-25 119.0 194 41.8
RcHm_v2.0_Chr2g0095761 Rosa chinensis HOM05D005897 ORTHO05D007128 4.9e-25 118.6 191 38.2
Gohir.D06G078500 Gossypium hirsutum HOM05D005897 ORTHO05D007128 6.4e-25 118.2 195 42.6
Cfa002951 Carpinus fangiana HOM05D005897 ORTHO05D007128 8.4e-25 117.9 195 40.5
Gohir.A06G079100 Gossypium hirsutum HOM05D005897 ORTHO05D007128 8.4e-25 117.9 196 42.3
Dinv42424 Davidia involucrata HOM05D005897 ORTHO05D007128 1.4e-24 117.1 179 37.4
Phvul.003G128400 Phaseolus vulgaris HOM05D005897 ORTHO05D007128 1.9e-24 116.7 181 39.2
Nitab4.5_0001699g0070 Nicotiana tabacum HOM05D005897 ORTHO05D007128 2.4e-24 116.3 188 35.6
Duzib150G1683 Durio zibethinus HOM05D005897 ORTHO05D007128 5.4e-24 115.2 206 37.9
Cpa.g.sc1772.1 Carica papaya HOM05D005897 ORTHO05D007128 7.1e-24 114.8 184 37.5
Nitab4.5_0008755g0010 Nicotiana tabacum HOM05D005897 ORTHO05D007128 7.1e-24 114.8 179 39.1
Sabra06G0107900 Salix brachista HOM05D005897 ORTHO05D007128 7.1e-24 114.8 203 38.4
Prupe.7G193600 Prunus persica HOM05D005897 ORTHO05D007128 1.2e-23 114.0 195 40.0
BcaB08g36527 Brassica carinata HOM05D005897 ORTHO05D007128 1.6e-23 113.6 183 36.1
Lalb_Chr23g0276271 Lupinus albus HOM05D005897 ORTHO05D007128 2.7e-23 112.8 179 40.8
Nitab4.5_0001092g0030 Nicotiana tabacum HOM05D005897 ORTHO05D007128 2.7e-23 112.8 209 33.0
Psat4g067280 Pisum sativum HOM05D005897 ORTHO05D007128 3.5e-23 112.5 182 39.0
Carub.0006s1909 Capsella rubella HOM05D005897 ORTHO05D007128 6.0e-23 111.7 207 35.7
CiPaw.03G202200 Carya illinoinensis HOM05D005897 ORTHO05D007128 1.0e-22 110.9 191 36.6
Medtr4g124850 Medicago truncatula HOM05D005897 ORTHO05D007128 1.0e-22 110.9 186 36.6
Thhalv10014753m.g Eutrema salsugineum HOM05D005897 ORTHO05D007128 3.0e-22 109.4 189 37.6
Sp6g23730 Schrenkiella parvula HOM05D005897 ORTHO05D007128 3.0e-22 109.4 200 37.0
QL11p002200 Quercus lobata HOM05D005897 ORTHO05D007128 3.9e-22 109.0 200 38.0
Sp5g18750 Schrenkiella parvula HOM05D005897 ORTHO05D007128 3.9e-22 109.0 182 39.0
Nitab4.5_0000400g0090 Nicotiana tabacum HOM05D005897 ORTHO05D007128 6.6e-22 108.2 212 33.5
SalBow6G0024 Salvia bowleyana HOM05D005897 ORTHO05D007128 8.7e-22 107.8 182 35.7
Ciclev10009511m.g Citrus clementina HOM05D005897 ORTHO05D007128 1.1e-21 107.5 189 34.4
FAN28G0476 Fragaria x ananassa HOM05D005897 ORTHO05D007128 1.5e-21 107.1 197 37.1
Gohir.D07G016500 Gossypium hirsutum HOM05D005897 ORTHO05D007128 1.5e-21 107.1 188 36.2
Gorai.001G017300 Gossypium raimondii HOM05D005897 ORTHO05D007128 1.5e-21 107.1 187 36.9
Oeu055332.1 Olea europaea HOM05D005897 ORTHO05D007128 1.5e-21 107.1 195 35.9
AT3G43110 Arabidopsis thaliana HOM05D005897 ORTHO05D007128 1.9e-21 106.7 182 37.4
AL5G21230 Arabidopsis lyrata HOM05D005897 ORTHO05D007128 2.5e-21 106.3 187 36.4
Gohir.A07G016700 Gossypium hirsutum HOM05D005897 ORTHO05D007128 2.5e-21 106.3 191 37.7
Manes.03G043500 Manihot esculenta HOM05D005897 ORTHO05D007128 2.5e-21 106.3 200 36.0
CARHR152530 Cardamine hirsuta HOM05D005897 ORTHO05D007128 3.3e-21 105.9 182 35.2
FAN23G1701 Fragaria x ananassa HOM05D005897 ORTHO05D007128 7.3e-21 104.8 204 37.3
FAN26G0251 Fragaria x ananassa HOM05D005897 ORTHO05D007128 9.6e-21 104.4 204 37.3
CSS0017580 Camellia sinensis var. sinensis HOM05D005897 ORTHO05D007128 1.3e-20 104.0 183 36.6
Glyma.17G046700 Glycine max HOM05D005897 ORTHO05D007128 1.3e-20 104.0 168 38.1
AL6G32310 Arabidopsis lyrata HOM05D005897 ORTHO05D007128 1.6e-20 103.6 215 32.6
AT5G20790 Arabidopsis thaliana HOM05D005897 ORTHO05D007128 2.1e-20 103.2 184 34.8
BcaC04g19466 Brassica carinata HOM05D005897 ORTHO05D007128 2.1e-20 103.2 184 32.6
BraA10t44004Z Brassica rapa HOM05D005897 ORTHO05D007128 2.1e-20 103.2 196 33.2
MD02G1099300 Malus domestica HOM05D005897 ORTHO05D007128 2.1e-20 103.2 194 38.1
THA.LOC104799609 Tarenaya hassleriana HOM05D005897 ORTHO05D007128 3.6e-20 102.4 215 33.0
A10p19270 Brassica napus HOM05D005897 ORTHO05D007128 4.8e-20 102.1 196 34.2
BcaB01g04771 Brassica carinata HOM05D005897 ORTHO05D007128 6.2e-20 101.7 187 33.7
CANSAT56G4244 Cannabis sativa HOM05D005897 ORTHO05D007128 6.2e-20 101.7 178 39.3
PGR044G2287 Punica granatum HOM05D005897 ORTHO05D007128 6.2e-20 101.7 196 34.7
TAR624G1366 Trochodendron aralioides HOM05D005897 ORTHO05D007128 6.2e-20 101.7 183 38.8
Actinidia39626 Actinidia chinensis HOM05D005897 ORTHO05D007128 8.1e-20 101.3 173 35.8
C09p55420 Brassica napus HOM05D005897 ORTHO05D007128 8.1e-20 101.3 183 32.2
BolC9t58404H Brassica oleracea HOM05D005897 ORTHO05D007128 8.1e-20 101.3 183 32.2
BcaB05g22814 Brassica carinata HOM05D005897 ORTHO05D007128 1.1e-19 100.9 186 34.4
CiPaw.04G140700 Carya illinoinensis HOM05D005897 ORTHO05D007128 1.8e-19 100.1 199 36.7
Peaxi162Scf00191g00103 Petunia axillaris HOM05D005897 ORTHO05D007128 1.8e-19 100.1 197 33.5
THA.LOC104811289 Tarenaya hassleriana HOM05D005897 ORTHO05D007128 2.4e-19 99.8 186 35.5
FAN26G0677 Fragaria x ananassa HOM05D005897 ORTHO05D007128 4.0e-19 99.0 205 36.6
CARHR192060 Cardamine hirsuta HOM05D005897 ORTHO05D007128 5.3e-19 98.6 180 35.0
PGR142G3671 Punica granatum HOM05D005897 ORTHO05D007128 6.9e-19 98.2 201 32.8
Rhsim05G0003600 Rhododendron simsii HOM05D005897 ORTHO05D007128 6.9e-19 98.2 173 34.7
SGA_v2.0_scaffold21G09544 Striga asiatica HOM05D005897 ORTHO05D007128 1.5e-18 97.1 180 34.4
Oeu055333.1 Olea europaea HOM05D005897 ORTHO05D007128 2.0e-18 96.7 198 33.8
BcaC03g13798 Brassica carinata HOM05D005897 ORTHO05D007128 2.6e-18 96.3 189 33.3
BolC2t07071H Brassica oleracea HOM05D005897 ORTHO05D007128 2.6e-18 96.3 189 33.3
Sopen07g022000 Solanum pennellii HOM05D000392 ORTHO05D002065 2.6e-18 96.3 183 36.6
Rhsim03G0226100 Rhododendron simsii HOM05D005897 ORTHO05D007128 3.4e-18 95.9 167 36.5
BraA03t10334Z Brassica rapa HOM05D005897 ORTHO05D007128 4.5e-18 95.5 197 33.5
Thhalv10002680m.g Eutrema salsugineum HOM05D005897 ORTHO05D007128 4.5e-18 95.5 187 34.8
FvH4_1g09230 Fragaria vesca HOM05D005897 ORTHO05D007128 4.5e-18 95.5 197 34.5
FAN19G1802 Fragaria x ananassa HOM05D005897 ORTHO05D007128 4.5e-18 95.5 197 34.5
Ciclev10024151m.g Citrus clementina HOM05D005897 ORTHO05D007128 7.6e-18 94.7 183 34.4
A03p10250 Brassica napus HOM05D005897 ORTHO05D007128 9.9e-18 94.4 197 33.0
Oeu010835.1 Olea europaea HOM05D005897 ORTHO05D007128 1.3e-17 94.0 181 37.0
TAR383G0419 Trochodendron aralioides HOM05D005897 ORTHO05D007128 1.7e-17 93.6 182 34.1
A02p06480 Brassica napus HOM05D005897 ORTHO05D007128 2.2e-17 93.2 189 33.9
C03p11770 Brassica napus HOM05D005897 ORTHO05D007128 2.2e-17 93.2 196 32.7
BolC3t13648H Brassica oleracea HOM05D005897 ORTHO05D007128 2.2e-17 93.2 196 32.7
BraA02t05593Z Brassica rapa HOM05D005897 ORTHO05D007128 2.2e-17 93.2 189 33.9
Carub.0005s0898 Capsella rubella HOM05D005897 ORTHO05D007128 2.9e-17 92.8 183 31.1
Potri.006G137700 Populus trichocarpa HOM05D005897 ORTHO05D007128 3.8e-17 92.4 202 30.7
Atru.chr7.1754 Acer truncatum HOM05D005897 ORTHO05D007128 1.1e-16 90.9 197 32.5
MSTRG.19434 Avicennia marina HOM05D005897 ORTHO05D007128 1.6e-15 87.0 183 31.1
Migut.J00894 Erythranthe guttata HOM05D005897 ORTHO05D007128 1.6e-15 87.0 179 30.7
TPR.G11456 Trifolium pratense HOM05D005897 ORTHO05D007128 3.5e-15 85.9 189 35.4
Lsat_1_v5_gn_5_139320 Lactuca sativa HOM05D005897 ORTHO05D007128 7.9e-15 84.7 209 31.6
Nn6g35653 Nelumbo nucifera HOM05D005897 ORTHO05D007128 1.8e-14 83.6 204 30.4
PGSC0003DMG400013552 Solanum tuberosum HOM05D005897 ORTHO05D007128 2.5e-13 79.7 181 32.6
unitig_22.g5071 Utricularia gibba HOM05D005897 ORTHO05D007128 1.3e-12 77.4 189 33.9
Eucgr.C03289 Eucalyptus grandis HOM05D005897 ORTHO05D007128 1.6e-12 77.0 194 30.9
Nn8g38553 Nelumbo nucifera HOM05D005897 ORTHO05D007128 1.1e-11 74.3 213 26.3
Dinv25518 Davidia involucrata HOM05D005897 ORTHO05D007128 5.3e-11 72.0 91 39.6
Actinidia29946 Actinidia chinensis HOM05D005897 ORTHO05D007128 2.0e-10 70.1 186 26.9
Migut.L01590 Erythranthe guttata HOM05D005897 ORTHO05D007128 9.9e-10 67.8 187 30.5
Rhsim03G0226200 Rhododendron simsii HOM05D005897 ORTHO05D007128 8.4e-09 64.7 109 39.4
PSO448G0001 Papaver somniferum HOM05D005897 ORTHO05D007128 1.2e-07 60.8 195 25.6
PSO386G0064 Papaver somniferum HOM05D005897 ORTHO05D007128 2.7e-07 59.7 202 28.7
AUR62028279 Chenopodium quinoa HOM05D005897 ORTHO05D007128 4.6e-07 58.9 174 31.0


User provided reference genes

Program Settings