Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40143 Trifolium pratense HOM05D005781 ORTHO05D006835 8.3e-44 179.9 84 100.0
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 8.9e-38 159.8 84 83.3
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 2.2e-36 155.2 84 81.0
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 1.1e-35 152.9 84 79.8
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 2.4e-35 151.8 84 78.6
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 4.1e-35 151.0 84 78.6
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 7.0e-35 150.2 84 77.4
Medtr5g009535 Medicago truncatula HOM05D005781 ORTHO05D006835 7.0e-35 150.2 84 79.8
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 1.6e-34 149.1 84 78.6
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 2.0e-34 148.7 84 78.6
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 5.9e-34 147.1 84 79.8
arahy.Tifrunner.gnm1.ann1.V38LZ0 Arachis hypogaea HOM05D005781 ORTHO05D006835 5.9e-34 147.1 84 79.8
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 2.8e-31 138.3 84 72.6
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 5.2e-30 134.0 84 69.0
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 2.9e-28 128.3 86 66.3
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 8.3e-28 126.7 86 66.3
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 1.1e-27 126.3 86 65.1
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 2.4e-27 125.2 84 65.5
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 2.4e-27 125.2 84 65.5
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 4.1e-27 124.4 86 66.3
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 5.4e-27 124.0 84 64.3
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 5.4e-27 124.0 84 64.3
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 7.0e-27 123.6 86 66.3
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 7.0e-27 123.6 84 65.5
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 9.2e-27 123.2 86 66.3
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 2.0e-26 122.1 84 63.1
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 2.0e-26 122.1 86 66.3
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 2.0e-26 122.1 86 62.8
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 3.5e-26 121.3 86 62.8
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 3.5e-26 121.3 84 64.3
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 6.0e-26 120.6 86 62.8
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 6.0e-26 120.6 86 61.6
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 6.0e-26 120.6 86 62.8
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 7.8e-26 120.2 84 66.7
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 7.8e-26 120.2 84 63.1
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.0e-25 119.8 86 62.8
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 1.3e-25 119.4 84 63.1
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 1.3e-25 119.4 86 61.6
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 1.7e-25 119.0 86 61.6
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 1.7e-25 119.0 84 61.9
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 3.0e-25 118.2 83 62.7
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 5.0e-25 117.5 86 61.6
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 5.0e-25 117.5 86 59.3
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 5.0e-25 117.5 86 61.6
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 6.6e-25 117.1 81 65.4
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 6.6e-25 117.1 81 65.4
VMungo0251G3003 Vigna mungo HOM05D005781 ORTHO05D006835 8.6e-25 116.7 73 69.9
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 1.1e-24 116.3 86 64.0
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 2.5e-24 115.2 86 59.3
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 4.3e-24 114.4 86 60.5
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 4.3e-24 114.4 86 60.5
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 4.3e-24 114.4 86 60.5
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 1.6e-23 112.5 84 60.7
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.1e-23 112.1 86 58.1
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.4e-22 109.4 84 58.3
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 1.4e-22 109.4 84 58.3
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 3.1e-22 108.2 84 57.1
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 3.1e-22 108.2 85 60.0
Gohir.A05G276166 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.0e-21 105.5 86 54.7
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 2.0e-21 105.5 84 54.8
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 3.4e-21 104.8 84 58.3
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 3.4e-21 104.8 84 56.0
Haze_11591 Corylus avellana HOM05D005781 ORTHO05D006835 3.4e-21 104.8 73 61.6
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 4.4e-21 104.4 93 54.8
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 5.8e-21 104.0 84 56.0
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 7.5e-21 103.6 84 56.0
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 9.9e-21 103.2 93 54.8
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 2.2e-20 102.1 84 56.0
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 2.2e-20 102.1 85 54.1
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 2.9e-20 101.7 84 54.8
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 3.7e-20 101.3 84 57.1
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 3.7e-20 101.3 85 54.1
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 3.7e-20 101.3 85 54.1
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 3.7e-20 101.3 85 54.1
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 6.4e-20 100.5 84 54.8
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 1.1e-19 99.8 84 52.4
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 1.4e-19 99.4 84 54.8
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 2.4e-19 98.6 88 53.4
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 2.4e-19 98.6 84 54.8
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 3.2e-19 98.2 84 52.4
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 9.2e-19 96.7 84 54.8
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 1.6e-18 95.9 84 54.8
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 2.1e-18 95.5 84 51.2
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 2.1e-18 95.5 88 52.3
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 2.1e-18 95.5 82 53.7
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 3.5e-18 94.7 84 50.0
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 6.0e-18 94.0 84 52.4
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 6.0e-18 94.0 84 54.8
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 1.0e-17 93.2 84 52.4
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 1.3e-17 92.8 84 52.4
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 1.7e-17 92.4 70 58.6
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 5.1e-17 90.9 85 51.8
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 8.6e-17 90.1 84 47.6
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 2.5e-16 88.6 87 50.6
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 3.3e-16 88.2 72 56.9
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 2.1e-15 85.5 85 52.9
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 2.1e-15 85.5 85 48.2
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 2.1e-15 85.5 84 50.0
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 3.6e-15 84.7 65 61.5
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 1.1e-14 83.2 73 50.7
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 2.6e-13 78.6 81 46.9
Thhalv10015111m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 2.6e-13 78.6 88 43.2
Thhalv10022933m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 2.6e-13 78.6 88 46.6
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 5.8e-13 77.4 51 68.6
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 9.9e-13 76.6 88 43.2
BcaB01g04964 Brassica carinata HOM05D005781 ORTHO05D006835 2.9e-12 75.1 90 43.3
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 4.9e-12 74.3 93 41.9
SGA_v2.0_scaffold57G20299 Striga asiatica HOM05D005781 ORTHO05D006835 4.9e-12 74.3 84 47.6
A09p11320 Brassica napus HOM05D005781 ORTHO05D006835 6.4e-12 73.9 90 44.4
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 6.4e-12 73.9 93 41.9
BraA09t36770Z Brassica rapa HOM05D005781 ORTHO05D006835 6.4e-12 73.9 90 44.4
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 8.4e-12 73.6 92 40.2
Sp6g27160 Schrenkiella parvula HOM05D005781 ORTHO05D006835 8.4e-12 73.6 89 43.8
SalBow1G0213 Salvia bowleyana HOM05D005781 ORTHO05D006835 1.1e-11 73.2 72 52.8
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 1.9e-11 72.4 72 51.4
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 2.4e-11 72.0 77 48.1
CARHR196210 Cardamine hirsuta HOM05D005781 ORTHO05D006835 9.2e-11 70.1 90 42.2
AT5G16950 Arabidopsis thaliana HOM05D005781 ORTHO05D006835 1.2e-10 69.7 89 39.3
Aa31LG11G12650 Aethionema arabicum HOM05D005781 ORTHO05D006835 1.6e-10 69.3 92 41.3
Lalb_Chr07g0188641 Lupinus albus HOM05D005781 ORTHO05D006835 2.1e-10 68.9 49 67.3
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 2.1e-10 68.9 56 57.1
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 2.7e-10 68.6 99 38.4
AL6G27950 Arabidopsis lyrata HOM05D005781 ORTHO05D006835 3.5e-10 68.2 91 40.7
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 4.6e-10 67.8 101 37.6
Carub.0006s1516 Capsella rubella HOM05D005781 ORTHO05D006835 1.0e-09 66.6 92 40.2
C09p13330 Brassica napus HOM05D005781 ORTHO05D006835 3.3e-08 61.6 76 39.5
BolC9t54226H Brassica oleracea HOM05D005781 ORTHO05D006835 3.3e-08 61.6 76 39.5
RcHm_v2.0_Chr1g0326231 Rosa chinensis HOM05D005781 ORTHO05D006835 5.6e-08 60.8 68 44.1
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 7.3e-08 60.5 45 55.6
Zm00001eb217150 Zea mays HOM05D000360 ORTHO05D006835 2.8e-07 58.5 57 49.1
Zm00001eb352440 Zea mays HOM05D000360 ORTHO05D006835 2.8e-07 58.5 57 49.1
BcaC04g22979 Brassica carinata HOM05D005781 ORTHO05D006835 8.1e-07 57.0 49 49.0
BcaB01g05235 Brassica carinata HOM05D005781 ORTHO05D006835 5.2e-06 54.3 38 60.5


User provided reference genes

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