Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.2e-86 323.2 161 100.0
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.2e-86 323.2 161 100.0
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 1.2e-86 323.2 161 100.0
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 1.2e-86 323.2 161 100.0
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 1.2e-86 323.2 161 100.0
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 3.4e-86 321.6 161 99.4
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 5.8e-86 320.9 161 99.4
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 5.8e-86 320.9 161 99.4
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 5.8e-86 320.9 161 99.4
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 5.8e-86 320.9 161 99.4
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 5.8e-86 320.9 161 99.4
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 2.2e-85 318.9 160 99.4
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 3.7e-85 318.2 161 98.1
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 3.7e-85 318.2 161 98.1
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 3.7e-85 318.2 161 98.1
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 8.3e-85 317.0 161 98.8
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 8.3e-85 317.0 160 98.8
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 1.1e-84 316.6 161 98.1
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 4.1e-84 314.7 161 97.5
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 7.0e-84 313.9 161 96.9
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 3.5e-83 311.6 161 96.9
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 6.0e-83 310.8 161 96.9
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 1.0e-82 310.1 161 96.9
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 1.0e-82 310.1 161 96.9
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 1.3e-82 309.7 161 96.3
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 1.3e-82 309.7 161 96.3
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 5.0e-82 307.8 161 96.3
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 5.0e-82 307.8 161 96.3
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 5.0e-82 307.8 161 96.3
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 5.0e-82 307.8 161 96.3
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 5.0e-82 307.8 161 96.3
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 5.0e-82 307.8 161 96.3
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 5.0e-82 307.8 161 96.3
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 5.0e-82 307.8 161 96.3
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 1.2e-80 303.1 162 95.7
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 2.1e-80 302.4 156 96.8
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 1.7e-74 282.7 137 100.0
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 1.2e-67 260.0 132 98.5
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 7.8e-67 257.3 159 83.6
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 1.0e-66 256.9 132 98.5
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.0e-66 256.9 132 98.5
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.0e-66 256.9 132 98.5
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.0e-66 256.9 132 98.5
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 3.3e-65 251.9 132 96.2
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 5.6e-65 251.1 132 96.2
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 5.6e-65 251.1 139 93.5
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 3.6e-64 248.4 132 96.2
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 1.3e-61 240.0 122 98.4
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 1.1e-60 236.9 122 98.4
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 1.0e-58 230.3 153 77.8
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.6e-56 223.0 161 75.8
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.5e-49 199.1 105 90.5
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.5e-49 199.1 105 90.5
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 3.3e-49 198.7 100 97.0
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 7.9e-43 177.6 102 86.3
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 3.9e-42 175.3 94 95.7
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 5.1e-42 174.9 90 98.9
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 5.1e-42 174.9 90 98.9
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 1.5e-41 173.3 94 94.7
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 2.5e-41 172.6 88 97.7
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 4.3e-41 171.8 88 98.9
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.6e-40 169.9 88 97.7
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 6.2e-40 167.9 90 94.4
Nitab4.5_0000074g0200 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.1e-39 167.2 104 78.8
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 2.4e-39 166.0 85 98.8
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.3e-39 164.9 90 92.2
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 1.1e-36 157.1 77 100.0
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.2e-36 155.2 116 73.3
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 6.0e-35 151.4 124 65.3
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 1.1e-31 140.6 161 53.4
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 1.5e-30 136.7 98 68.4
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 3.8e-29 132.1 70 92.9
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 3.8e-29 132.1 64 98.4
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.5e-28 128.3 144 54.9
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 7.2e-28 127.9 67 98.5
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.0e-26 124.0 67 94.0
Lalb_Chr00c21g0405811 Lupinus albus HOM05D004537 ORTHO05D005492 5.1e-26 121.7 56 100.0
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 2.5e-25 119.4 143 44.1
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 8.2e-24 114.4 88 73.9
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 8.2e-24 114.4 123 53.7
Solyc08g029290.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.4e-23 113.6 76 75.0
C04p32420 Brassica napus HOM05D004537 ORTHO05D005492 1.0e-18 97.4 70 74.3
EL10Ac5g12760 Beta vulgaris HOM05D004537 ORTHO05D005492 5.7e-17 91.7 46 91.3
TPR.G39033 Trifolium pratense HOM05D004537 ORTHO05D005492 1.4e-15 87.0 50 84.0
Nitab4.5_0001127g0350 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.3e-15 85.1 42 92.9
Nitab4.5_0001234g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.3e-15 85.1 55 83.6
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 1.5e-14 83.6 90 56.7
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 3.4e-14 82.4 143 39.9
Nitab4.5_0002322g0200 Nicotiana tabacum HOM05D004537 ORTHO05D015169 4.5e-14 82.0 41 95.1
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 3.9e-10 68.9 34 94.1
BolC4t24790H Brassica oleracea HOM05D004537 ORTHO05D005492 5.2e-10 68.6 35 88.6


User provided reference genes

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