Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40073 Trifolium pratense HOM05D001779 ORTHO05D001753 1.0e-81 306.6 147 100.0
TPR.G28387 Trifolium pratense HOM05D001779 ORTHO05D001753 5.0e-60 234.6 118 93.2
Medtr3g033040 Medicago truncatula HOM05D001779 ORTHO05D001753 3.4e-45 185.3 116 81.9
Psat5g209840 Pisum sativum HOM05D001779 ORTHO05D001753 9.4e-43 177.2 115 78.3
Ca_19095_v3 Cicer arietinum L. HOM05D001779 ORTHO05D001753 2.2e-39 166.0 107 78.5
Lalb_Chr25g0282471 Lupinus albus HOM05D001779 ORTHO05D001753 2.2e-31 139.4 106 67.9
Lj3g0021087 Lotus japonicus HOM05D001779 ORTHO05D001753 5.0e-28 128.3 121 62.8
arahy.Tifrunner.gnm1.ann1.4TV6QC Arachis hypogaea HOM05D001779 ORTHO05D001753 1.5e-27 126.7 107 60.7
Glyma.14G007500 Glycine max HOM05D001779 ORTHO05D001753 1.5e-24 116.7 101 64.4
arahy.Tifrunner.gnm1.ann1.243BFB Arachis hypogaea HOM05D001779 ORTHO05D001753 9.8e-24 114.0 101 59.4
Phvul.008G285500 Phaseolus vulgaris HOM05D001779 ORTHO05D001753 3.7e-23 112.1 104 56.7
QL04p008865 Quercus lobata HOM05D001779 ORTHO05D001753 2.9e-20 102.4 94 58.5
VMungo0647G1551 Vigna mungo HOM05D001779 ORTHO05D001753 2.9e-20 102.4 102 56.9
Actinidia19409 Actinidia chinensis HOM05D001779 ORTHO05D001753 2.1e-18 96.3 102 52.0
PGR031G1422 Punica granatum HOM05D001779 ORTHO05D001753 2.1e-18 96.3 107 53.3
Hma1.2p1_1399F.1_g280850 Hydrangea macrophylla HOM05D001779 ORTHO05D001753 3.6e-18 95.5 125 52.0
Haze_03158 Corylus avellana HOM05D001779 ORTHO05D001753 1.0e-17 94.0 95 55.8
Rhsim07G0058000 Rhododendron simsii HOM05D001779 ORTHO05D001753 3.0e-17 92.4 96 50.0
AL5G34050 Arabidopsis lyrata HOM05D001779 ORTHO05D001753 8.9e-17 90.9 95 50.5
AT3G53170 Arabidopsis thaliana HOM05D001779 ORTHO05D001753 8.9e-17 90.9 95 50.5
CSS0002295 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 8.9e-17 90.9 103 53.4
CSS0039833 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 8.9e-17 90.9 103 53.4
Thhalv10011131m.g Eutrema salsugineum HOM05D001779 ORTHO05D001753 8.9e-17 90.9 95 49.5
Atru.chr11.2583 Acer truncatum HOM05D001779 ORTHO05D001753 1.5e-16 90.1 96 50.0
Ciclev10020011m.g Citrus clementina HOM05D001779 ORTHO05D001753 2.0e-16 89.7 96 50.0
Lj9A638T72 Lonicera japonica HOM05D001779 ORTHO05D001753 2.6e-16 89.4 103 51.5
CSS0004396 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 4.4e-16 88.6 103 52.4
CiPaw.14G002100 Carya illinoinensis HOM05D001779 ORTHO05D001753 4.4e-16 88.6 76 61.8
Nitab4.5_0001676g0060 Nicotiana tabacum HOM05D001779 ORTHO05D001753 4.4e-16 88.6 102 53.9
GSVIVG01032162001 Vitis vinifera HOM05D001779 ORTHO05D001753 4.4e-16 88.6 103 50.5
Carub.0005s1970 Capsella rubella HOM05D001779 ORTHO05D001753 7.5e-16 87.8 110 45.5
Duzib133G0213 Durio zibethinus HOM05D001779 ORTHO05D001753 7.5e-16 87.8 117 50.4
THA.LOC104826684 Tarenaya hassleriana HOM05D001779 ORTHO05D001753 7.5e-16 87.8 96 50.0
A09p46160 Brassica napus HOM05D001779 ORTHO05D001753 9.8e-16 87.4 95 48.4
Hund15421 Selenicereus undatus HOM05D001779 ORTHO05D001753 1.7e-15 86.7 93 50.5
Manes.07G008000 Manihot esculenta HOM05D001779 ORTHO05D001753 2.2e-15 86.3 104 51.0
Nitab4.5_0000087g0090 Nicotiana tabacum HOM05D001779 ORTHO05D001753 2.2e-15 86.3 102 53.9
Sabra09G0042900 Salix brachista HOM05D001779 ORTHO05D001753 2.8e-15 85.9 102 52.0
Sp5g09160 Schrenkiella parvula HOM05D001779 ORTHO05D001753 2.8e-15 85.9 95 48.4
vmacro13689 Vaccinium macrocarpon HOM05D001779 ORTHO05D001753 3.7e-15 85.5 92 47.8
BraA09t40080Z Brassica rapa HOM05D001779 ORTHO05D001753 4.9e-15 85.1 95 47.4
MELO3C023572.2 Cucumis melo HOM05D001779 ORTHO05D001753 4.9e-15 85.1 102 46.1
Dinv09324 Davidia involucrata HOM05D001779 ORTHO05D001753 4.9e-15 85.1 102 48.0
Solyc08g045780.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 6.3e-15 84.7 70 61.4
Sopen08g013850 Solanum pennellii HOM05D001779 ORTHO05D001753 6.3e-15 84.7 70 61.4
PGSC0003DMG400003133 Solanum tuberosum HOM05D001779 ORTHO05D001753 6.3e-15 84.7 70 64.3
BcaC07g39673 Brassica carinata HOM05D001779 ORTHO05D001753 8.3e-15 84.3 95 46.3
C08p28390 Brassica napus HOM05D001779 ORTHO05D001753 8.3e-15 84.3 95 46.3
BolC8t50449H Brassica oleracea HOM05D001779 ORTHO05D001753 8.3e-15 84.3 95 46.3
AUR62023085 Chenopodium quinoa HOM05D001779 ORTHO05D001753 1.4e-14 83.6 105 45.7
TAR633G2494 Trochodendron aralioides HOM05D001779 ORTHO05D001753 2.4e-14 82.8 104 50.0
AUR62009402 Chenopodium quinoa HOM05D001779 ORTHO05D001753 3.1e-14 82.4 107 47.7
CARHR163140 Cardamine hirsuta HOM05D001779 ORTHO05D001753 5.4e-14 81.6 112 42.0
ClCG09G003940 Citrullus lanatus HOM05D001779 ORTHO05D001753 5.4e-14 81.6 110 46.4
vmacro00260 Vaccinium macrocarpon HOM05D001779 ORTHO05D001753 5.4e-14 81.6 131 41.2
COL.COLO4_04875 Corchorus olitorius HOM05D001779 ORTHO05D001753 1.2e-13 80.5 107 49.5
CsaV3_7G030850 Cucumis sativus L. HOM05D001779 ORTHO05D001753 1.6e-13 80.1 71 57.7
CAN.G50.4 Capsicum annuum HOM05D001779 ORTHO05D001753 2.0e-13 79.7 60 63.3
TWI09G1636 Tripterygium wilfordii HOM05D001779 ORTHO05D001753 2.0e-13 79.7 101 46.5
CANSAT80G2404 Cannabis sativa HOM05D001779 ORTHO05D001753 2.7e-13 79.3 105 47.6
Sc14g0005010 Simmondsia chinensis HOM05D001779 ORTHO05D001753 2.7e-13 79.3 103 50.5
TAR633G1986 Trochodendron aralioides HOM05D001779 ORTHO05D001753 4.5e-13 78.6 104 48.1
MSTRG.5036 Avicennia marina HOM05D001779 ORTHO05D001753 7.8e-13 77.8 90 52.2
Peaxi162Scf00071g01040 Petunia axillaris HOM05D001779 ORTHO05D001753 7.8e-13 77.8 106 45.3
Prupe.2G019900 Prunus persica HOM05D001779 ORTHO05D001753 7.8e-13 77.8 73 54.8
Gorai.004G066800 Gossypium raimondii HOM05D001779 ORTHO05D001753 1.0e-12 77.4 93 54.8
Sed0001001 Sechium edule HOM05D001779 ORTHO05D001753 1.0e-12 77.4 91 46.2
EL10Ac2g04350 Beta vulgaris HOM05D001779 ORTHO05D001753 2.3e-12 76.3 102 42.2
Gohir.D08G064500 Gossypium hirsutum HOM05D001779 ORTHO05D001753 2.3e-12 76.3 93 53.8
SGA_v2.0_scaffold36G14402 Striga asiatica HOM05D001779 ORTHO05D001753 2.3e-12 76.3 91 46.2
Thecc.01G407600 Theobroma cacao HOM05D001779 ORTHO05D001753 2.9e-12 75.9 105 48.6
Migut.N01786 Erythranthe guttata HOM05D001779 ORTHO05D001753 5.0e-12 75.1 57 64.9
Gohir.A08G055001 Gossypium hirsutum HOM05D001779 ORTHO05D001753 5.0e-12 75.1 93 52.7
Lsat_1_v5_gn_4_115801 Lactuca sativa HOM05D001779 ORTHO05D001753 6.6e-12 74.7 106 45.3
Cc02_g28360 Coffea canephora HOM05D001779 ORTHO05D001753 1.1e-11 73.9 76 52.6
CDE04G3359 Ceratophyllum demersum HOM05D001779 ORTHO05D001753 1.9e-11 73.2 57 61.4
Eucgr.G03360 Eucalyptus grandis HOM05D001779 ORTHO05D001753 4.3e-11 72.0 101 42.6
RcHm_v2.0_Chr1g0317271 Rosa chinensis HOM05D001779 ORTHO05D001753 5.6e-11 71.6 93 45.2
FAN03G3349 Fragaria x ananassa HOM05D001779 ORTHO05D001753 7.3e-11 71.2 69 55.1
FAN10G0484 Fragaria x ananassa HOM05D001779 ORTHO05D001753 9.5e-11 70.9 67 56.7
HanXRQChr16g0501781 Helianthus annuus HOM05D001779 ORTHO05D001753 9.5e-11 70.9 104 44.2
MD02G1305700 Malus domestica HOM05D001779 ORTHO05D001753 1.6e-10 70.1 69 55.1
FvH4_7g01420 Fragaria vesca HOM05D001779 ORTHO05D001753 2.1e-10 69.7 69 53.6
FAN06G3831 Fragaria x ananassa HOM05D001779 ORTHO05D001753 2.1e-10 69.7 69 53.6
SalBow6G2927 Salvia bowleyana HOM05D001779 ORTHO05D001753 2.1e-10 69.7 81 44.4
MD02G1306000 Malus domestica HOM05D001779 ORTHO05D001753 2.8e-10 69.3 67 56.7
TPR.G28384 Trifolium pratense HOM05D005561 ORTHO05D006834 2.8e-10 69.3 71 56.3
EL10Ac2g03860 Beta vulgaris HOM05D001779 ORTHO05D001753 8.0e-10 67.8 51 62.7
FAN01G1074 Fragaria x ananassa HOM05D001779 ORTHO05D001753 8.0e-10 67.8 53 60.4
DCAR_016451 Daucus carota HOM05D001779 ORTHO05D001753 3.1e-09 65.9 51 64.7
PSO782G1225 Papaver somniferum HOM05D001779 ORTHO05D001753 3.1e-09 65.9 101 41.6
EL10Ac9g20931 Beta vulgaris HOM05D000308 ORTHO05D001753 5.2e-09 65.1 51 58.8
PSO063G6602 Papaver somniferum HOM05D001779 ORTHO05D001753 8.9e-09 64.3 101 40.6
Zm00001eb001020 Zea mays HOM05D001779 ORTHO05D001753 1.5e-08 63.5 70 50.0
Os03g0115300 Oryza sativa ssp. japonica HOM05D001779 ORTHO05D001753 1.3e-07 60.5 117 37.6
Aa31LG10G8340 Aethionema arabicum HOM05D001779 ORTHO05D001753 1.9e-06 56.6 43 58.1
Nn8g40891 Nelumbo nucifera HOM05D001779 ORTHO05D001753 9.2e-06 54.3 73 45.2
vmacro00256 Vaccinium macrocarpon HOM05D001779 ORTHO05D001753 9.2e-06 54.3 41 61.0


User provided reference genes

Program Settings