Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40067 Trifolium pratense HOM05D003845 ORTHO05D004161 3.7e-21 104.0 54 100.0
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 1.7e-18 95.1 51 96.1
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 2.5e-17 91.3 51 90.2
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 3.3e-17 90.9 51 90.2
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 4.2e-17 90.5 51 88.2
RcHm_v2.0_Chr2g0163391 Rosa chinensis HOM05D003845 ORTHO05D004161 2.8e-16 87.8 53 84.9
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 3.6e-16 87.4 51 88.2
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 3.6e-16 87.4 51 86.3
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 8.0e-16 86.3 51 86.3
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 1.8e-15 85.1 51 84.3
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 2.3e-15 84.7 51 84.3
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 2.3e-15 84.7 51 82.4
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 2.3e-15 84.7 51 82.4
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 2.3e-15 84.7 51 84.3
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 4.0e-15 84.0 51 82.4
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 4.0e-15 84.0 51 84.3
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 5.2e-15 83.6 51 82.4
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 5.2e-15 83.6 51 82.4
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 5.2e-15 83.6 51 82.4
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 5.2e-15 83.6 51 82.4
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 6.8e-15 83.2 51 82.4
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 6.8e-15 83.2 52 82.7
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 8.9e-15 82.8 51 82.4
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 1.2e-14 82.4 51 82.4
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 1.2e-14 82.4 51 82.4
Cpa.g.c36099 Carica papaya HOM05D003845 ORTHO05D004161 1.5e-14 82.0 50 82.0
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 1.5e-14 82.0 51 80.4
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 1.5e-14 82.0 51 84.3
Rhsim09G0080700 Rhododendron simsii HOM05D003845 ORTHO05D004161 2.0e-14 81.6 51 82.4
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 2.0e-14 81.6 51 80.4
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 2.6e-14 81.3 51 82.4
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 2.6e-14 81.3 51 82.4
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 3.4e-14 80.9 51 82.4
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 4.4e-14 80.5 51 80.4
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 4.4e-14 80.5 53 77.4
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 4.4e-14 80.5 53 77.4
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 5.7e-14 80.1 51 78.4
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 5.7e-14 80.1 51 78.4
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 5.7e-14 80.1 51 80.4
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 5.7e-14 80.1 51 78.4
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 9.8e-14 79.3 51 78.4
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 9.8e-14 79.3 51 78.4
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 1.7e-13 78.6 51 80.4
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 1.7e-13 78.6 51 74.5
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 1.7e-13 78.6 50 76.0
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 1.7e-13 78.6 51 80.4
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 2.8e-13 77.8 51 72.5
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 3.7e-13 77.4 51 80.4
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 3.7e-13 77.4 51 80.4
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 3.7e-13 77.4 51 78.4
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.9e-13 77.0 51 78.4
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.9e-13 77.0 51 78.4
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 4.9e-13 77.0 51 72.5
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 6.3e-13 76.6 51 74.5
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 8.3e-13 76.3 51 74.5
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 8.3e-13 76.3 51 76.5
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 8.3e-13 76.3 51 76.5
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 8.3e-13 76.3 51 74.5
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 1.8e-12 75.1 51 70.6
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 4.1e-12 73.9 50 72.0
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 4.1e-12 73.9 51 72.5
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 4.1e-12 73.9 51 70.6
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 1.6e-11 72.0 51 72.5
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 2.0e-11 71.6 51 70.6
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 2.7e-11 71.2 51 68.6
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 3.5e-11 70.9 51 70.6
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 3.5e-11 70.9 51 70.6
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 3.5e-11 70.9 51 72.5
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 4.5e-11 70.5 51 66.7
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 5.9e-11 70.1 40 87.5
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 7.8e-11 69.7 53 66.0
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 1.0e-10 69.3 51 70.6
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 2.9e-10 67.8 51 66.7
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 3.9e-10 67.4 51 66.7
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 8.6e-10 66.2 51 64.7
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 1.1e-09 65.9 51 66.7
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 1.1e-09 65.9 51 64.7
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 1.5e-09 65.5 51 66.7
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 2.5e-09 64.7 51 64.7
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 3.3e-09 64.3 51 64.7
ClCG11G005430 Citrullus lanatus HOM05D003845 ORTHO05D004161 4.3e-09 63.9 42 73.8
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 5.6e-09 63.5 51 62.7
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 7.3e-09 63.2 51 64.7
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 7.3e-09 63.2 51 64.7
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 7.3e-09 63.2 51 64.7
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 7.3e-09 63.2 51 64.7
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 7.3e-09 63.2 44 72.7
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 9.5e-09 62.8 51 62.7
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 1.2e-08 62.4 51 64.7
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 1.6e-08 62.0 48 62.5
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 1.6e-08 62.0 48 62.5
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 8.0e-08 59.7 48 62.5
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 2.0e-06 55.1 48 58.3


User provided reference genes

Program Settings