Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40035 Trifolium pratense HOM05D008978 ORTHO05D010988 2.4e-121 438.7 205 100.0
TPR.G15453 Trifolium pratense HOM05D008978 ORTHO05D010988 1.9e-110 402.5 205 92.2
TPR.G36616 Trifolium pratense HOM05D008978 ORTHO05D010988 1.4e-81 306.6 169 85.8
TPR.G11563 Trifolium pratense HOM05D008978 ORTHO05D010988 1.9e-81 306.2 152 90.8
Medtr5g094680 Medicago truncatula HOM05D008978 ORTHO05D010988 1.8e-44 183.3 209 48.3
TPR.G24474 Trifolium pratense HOM05D008978 ORTHO05D010988 1.3e-34 150.6 206 39.8
arahy.Tifrunner.gnm1.ann1.8W42RH Arachis hypogaea HOM05D008978 ORTHO05D010988 1.8e-28 130.2 209 38.3
arahy.Tifrunner.gnm1.ann1.7K017H Arachis hypogaea HOM05D008978 ORTHO05D010988 2.9e-26 122.9 185 38.4
arahy.Tifrunner.gnm1.ann1.G4DYTJ Arachis hypogaea HOM05D008978 ORTHO05D010988 1.1e-25 120.9 179 39.1
TPR.G575 Trifolium pratense HOM05D008978 ORTHO05D010988 3.6e-24 115.9 203 33.0
TPR.G17946 Trifolium pratense HOM05D008978 ORTHO05D010988 2.6e-22 109.8 203 33.0
Medtr7g093310 Medicago truncatula HOM05D008978 ORTHO05D010988 4.4e-22 109.0 165 36.4
TPR.G25767 Trifolium pratense HOM05D008978 ORTHO05D010988 9.8e-22 107.8 207 36.2
TPR.G26731 Trifolium pratense HOM05D008978 ORTHO05D010988 9.8e-22 107.8 207 36.2
Medtr5g006240 Medicago truncatula HOM05D008978 ORTHO05D010988 2.2e-21 106.7 219 35.2
TPR.G25779 Trifolium pratense HOM05D008978 ORTHO05D010988 1.1e-20 104.4 196 32.1
Medtr7g092960 Medicago truncatula HOM05D008978 ORTHO05D010988 9.1e-20 101.3 116 48.3
TPR.G25798 Trifolium pratense HOM05D008978 ORTHO05D010988 2.5e-17 93.2 193 31.6
TPR.G34387 Trifolium pratense HOM05D008978 ORTHO05D010988 4.2e-17 92.4 193 32.1
TPR.G11917 Trifolium pratense HOM05D008978 ORTHO05D010988 9.5e-17 91.3 169 34.9
Medtr1g029860 Medicago truncatula HOM05D008978 ORTHO05D010988 1.4e-15 87.4 173 29.5
TPR.G11843 Trifolium pratense HOM05D008978 ORTHO05D010988 3.0e-15 86.3 179 30.7
Lj1g0026275 Lotus japonicus HOM05D008978 ORTHO05D010988 2.2e-13 80.1 183 30.6
Lalb_Chr04g0253451 Lupinus albus HOM05D008978 ORTHO05D010988 3.7e-13 79.3 83 41.0
Medtr5g037810 Medicago truncatula HOM05D008978 ORTHO05D010988 8.3e-13 78.2 129 33.3
Medtr5g037840 Medicago truncatula HOM05D008978 ORTHO05D010988 1.4e-12 77.4 129 33.3
Medtr8g085520 Medicago truncatula HOM05D008978 ORTHO05D010988 1.8e-12 77.0 150 33.3
Medtr1g029910 Medicago truncatula HOM05D008978 ORTHO05D010988 4.1e-12 75.9 193 30.1
Medtr8g085550 Medicago truncatula HOM05D008978 ORTHO05D010988 7.0e-12 75.1 131 32.8
Medtr8g085530 Medicago truncatula HOM05D008978 ORTHO05D010988 2.0e-11 73.6 54 53.7
RcHm_v2.0_Chr6g0295911 Rosa chinensis HOM05D000082 ORTHO05D000038 8.6e-10 68.2 180 28.9
FvH4_2g27040 Fragaria vesca HOM05D000082 ORTHO05D000038 2.5e-09 66.6 180 28.9
FAN24G0679 Fragaria x ananassa HOM05D029497 ORTHO05D000038 2.5e-09 66.6 180 28.9
Prupe.1G495200 Prunus persica HOM05D000082 ORTHO05D000038 2.5e-09 66.6 177 28.8
Manes.06G094900 Manihot esculenta HOM05D000082 ORTHO05D000038 5.6e-09 65.5 154 31.2
QL09p034431 Quercus lobata HOM05D041415 ORTHO05D000038 4.7e-08 62.4 174 31.0
Cpa.g.sc17.216 Carica papaya HOM05D000082 ORTHO05D000038 6.1e-08 62.0 77 41.6
Ca_27540_v3 Cicer arietinum L. HOM05D000082 ORTHO05D000038 6.1e-08 62.0 88 35.2
Ciclev10022101m.g Citrus clementina HOM05D000082 ORTHO05D000038 6.1e-08 62.0 203 29.1
Potri.002G083001 Populus trichocarpa HOM05D000082 ORTHO05D000038 6.1e-08 62.0 185 28.1
FAN13G3143 Fragaria x ananassa HOM05D006854 ORTHO05D029383 1.0e-07 61.2 134 27.6
FAN20G2391 Fragaria x ananassa HOM05D029497 ORTHO05D000038 1.0e-07 61.2 169 27.2
Cpa.g.c33379.2 Carica papaya HOM05D000082 ORTHO05D000038 1.8e-07 60.5 76 40.8
Dinv07230 Davidia involucrata HOM05D000082 ORTHO05D000038 1.8e-07 60.5 88 38.6
Sabra07G0089700 Salix brachista HOM05D000082 ORTHO05D000038 1.8e-07 60.5 123 33.3
TWI60G0680 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 2.3e-07 60.1 120 28.3
Potri.007G118000 Populus trichocarpa HOM05D000082 ORTHO05D000038 3.0e-07 59.7 74 39.2
QL10p015716 Quercus lobata HOM05D000082 ORTHO05D000038 3.0e-07 59.7 74 44.6
QL10p017068 Quercus lobata HOM05D000082 ORTHO05D000038 4.0e-07 59.3 74 36.5
Sed0011169 Sechium edule HOM05D000341 ORTHO05D000557 5.2e-07 58.9 52 50.0
FAN08G1170 Fragaria x ananassa HOM05D006854 ORTHO05D029383 6.8e-07 58.5 101 29.7
MD04G1076700 Malus domestica HOM05D000082 ORTHO05D000038 8.9e-07 58.2 76 40.8
Potri.005G081200 Populus trichocarpa HOM05D000341 ORTHO05D000557 8.9e-07 58.2 51 47.1
Prupe.8G048800 Prunus persica HOM05D000082 ORTHO05D000038 8.9e-07 58.2 75 38.7
ClCG01G019070 Citrullus lanatus HOM05D000341 ORTHO05D000557 1.2e-06 57.8 52 50.0
MELO3C007785.2 Cucumis melo HOM05D000341 ORTHO05D000557 1.2e-06 57.8 52 50.0
FvH4_5g06150 Fragaria vesca HOM05D006854 ORTHO05D029383 1.2e-06 57.8 120 27.5
Manes.18G113400 Manihot esculenta HOM05D000082 ORTHO05D000038 1.2e-06 57.8 128 29.7
Dinv03540 Davidia involucrata HOM05D000082 ORTHO05D000038 1.5e-06 57.4 75 44.0
Cpa.g.sc35.33 Carica papaya HOM05D000082 ORTHO05D000038 2.6e-06 56.6 77 37.7
CiPaw.03G137400 Carya illinoinensis HOM05D000341 ORTHO05D000557 2.6e-06 56.6 52 48.1
Dinv00634 Davidia involucrata HOM05D000082 ORTHO05D000038 2.6e-06 56.6 75 44.0
Aqoxy3G02526 Aquilegia oxysepala HOM05D000082 ORTHO05D000038 3.4e-06 56.2 69 43.5
Sed0001488 Sechium edule HOM05D000341 ORTHO05D000557 3.4e-06 56.2 51 47.1
Medtr2g079320 Medicago truncatula HOM05D000157 ORTHO05D001065 5.7e-06 55.5 56 44.6
Nn1g00576 Nelumbo nucifera HOM05D000082 ORTHO05D000038 5.7e-06 55.5 74 40.5
Oeu003258.1 Olea europaea HOM05D000082 ORTHO05D000038 5.7e-06 55.5 136 30.1
Peaxi162Scf00431g00512 Petunia axillaris HOM05D000082 ORTHO05D000038 5.7e-06 55.5 74 32.4
Ca_14328_v3 Cicer arietinum L. HOM05D000082 ORTHO05D000038 7.5e-06 55.1 84 32.1
Haze_09420 Corylus avellana HOM05D000086 ORTHO05D001065 7.5e-06 55.1 58 44.8
FAN18G3992 Fragaria x ananassa HOM05D006854 ORTHO05D029383 7.5e-06 55.1 120 26.7
Peaxi162Scf00013g01223 Petunia axillaris HOM05D000082 ORTHO05D000038 7.5e-06 55.1 74 32.4
Sabra05G0066500 Salix brachista HOM05D000341 ORTHO05D000557 7.5e-06 55.1 52 42.3
COL.COLO4_33147 Corchorus olitorius HOM05D000082 ORTHO05D000038 9.8e-06 54.7 74 37.8
QL08p042523 Quercus lobata HOM05D000082 ORTHO05D008126 9.8e-06 54.7 75 37.3
RcHm_v2.0_Chr5g0034021 Rosa chinensis HOM05D000086 ORTHO05D001065 9.8e-06 54.7 65 41.5
Sabra09G0024800 Salix brachista HOM05D000082 ORTHO05D001639 9.8e-06 54.7 75 40.0
Thecc.10G079200 Theobroma cacao HOM05D015238 ORTHO05D020498 9.8e-06 54.7 69 42.0


User provided reference genes

Program Settings