Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40013 Trifolium pratense HOM05D002352 ORTHO05D014906 3.4e-74 281.6 143 100.0
TPR.G10987 Trifolium pratense HOM05D002352 ORTHO05D014906 1.2e-42 176.8 106 86.8
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 8.0e-39 164.1 112 81.2
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 1.8e-35 152.9 158 60.8
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 3.1e-35 152.1 152 61.2
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 3.1e-35 152.1 152 61.8
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 7.0e-35 151.0 118 71.2
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 2.7e-34 149.1 117 69.2
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 2.7e-34 149.1 117 69.2
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 2.7e-34 149.1 118 70.3
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 7.8e-34 147.5 118 69.5
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 1.3e-33 146.7 118 68.6
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 1.3e-33 146.7 117 67.5
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 1.3e-33 146.7 118 67.8
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 2.9e-33 145.6 118 68.6
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 2.9e-33 145.6 118 68.6
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 3.8e-33 145.2 118 67.8
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 3.8e-33 145.2 152 59.9
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 1.1e-32 143.7 112 68.8
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 1.5e-32 143.3 118 67.8
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.5e-32 143.3 117 67.5
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 2.5e-32 142.5 118 66.9
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 3.3e-32 142.1 117 67.5
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.3e-32 141.7 117 66.7
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 5.6e-32 141.4 111 67.6
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 1.2e-31 140.2 111 67.6
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.2e-31 140.2 117 65.8
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.2e-31 140.2 117 65.8
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 1.2e-31 140.2 118 63.6
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 1.2e-31 140.2 118 63.6
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 1.6e-31 139.8 118 66.9
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 2.1e-31 139.4 112 69.6
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 2.1e-31 139.4 112 68.8
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 4.7e-31 138.3 117 60.7
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 6.1e-31 137.9 118 64.4
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 8.0e-31 137.5 112 66.1
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 1.0e-30 137.1 112 67.0
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 1.0e-30 137.1 111 65.8
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 1.4e-30 136.7 112 67.0
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 1.4e-30 136.7 118 66.1
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.8e-30 136.3 112 67.0
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 2.3e-30 136.0 118 64.4
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 3.0e-30 135.6 129 62.0
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 3.0e-30 135.6 117 64.1
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 3.0e-30 135.6 117 64.1
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 4.0e-30 135.2 118 65.3
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 6.8e-30 134.4 111 64.0
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 6.8e-30 134.4 118 64.4
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 1.2e-29 133.7 117 61.5
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 1.5e-29 133.3 117 63.2
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 2.0e-29 132.9 117 62.4
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 2.0e-29 132.9 111 63.1
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 2.0e-29 132.9 111 63.1
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 2.6e-29 132.5 118 63.6
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 3.4e-29 132.1 111 63.1
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 3.4e-29 132.1 111 63.1
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 3.4e-29 132.1 118 64.4
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 3.4e-29 132.1 117 59.8
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 4.4e-29 131.7 118 62.7
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 4.4e-29 131.7 112 65.2
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 4.4e-29 131.7 117 59.8
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 4.4e-29 131.7 117 59.8
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 4.4e-29 131.7 112 65.2
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 5.8e-29 131.3 117 62.4
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 7.5e-29 131.0 111 63.1
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 7.5e-29 131.0 111 63.1
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 7.5e-29 131.0 111 63.1
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 7.5e-29 131.0 111 63.1
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 9.8e-29 130.6 118 61.9
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 9.8e-29 130.6 117 59.8
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 9.8e-29 130.6 117 59.8
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 9.8e-29 130.6 112 62.5
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 1.3e-28 130.2 111 62.2
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 1.3e-28 130.2 111 62.2
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 1.3e-28 130.2 111 62.2
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 1.3e-28 130.2 111 62.2
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 1.3e-28 130.2 111 62.2
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 1.3e-28 130.2 111 62.2
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 1.7e-28 129.8 111 62.2
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 2.2e-28 129.4 111 61.3
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 2.2e-28 129.4 117 57.3
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 2.2e-28 129.4 111 61.3
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 2.9e-28 129.0 118 58.5
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 3.7e-28 128.6 111 61.3
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 3.7e-28 128.6 147 53.7
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 3.7e-28 128.6 153 50.3
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 3.7e-28 128.6 117 59.0
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 4.9e-28 128.3 118 63.6
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 8.3e-28 127.5 118 59.3
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 8.3e-28 127.5 117 58.1
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 1.1e-27 127.1 117 60.7
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 1.4e-27 126.7 111 60.4
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 1.4e-27 126.7 147 52.4
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.4e-27 126.7 118 59.3
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 1.8e-27 126.3 117 59.0
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 1.8e-27 126.3 118 60.2
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 2.4e-27 125.9 112 60.7
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 3.2e-27 125.6 117 56.4
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 3.2e-27 125.6 118 60.2
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 3.2e-27 125.6 117 59.8
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 3.2e-27 125.6 112 59.8
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 4.1e-27 125.2 118 58.5
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 4.1e-27 125.2 112 61.6
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 5.4e-27 124.8 112 59.8
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 5.4e-27 124.8 153 51.0
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 5.4e-27 124.8 112 59.8
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 1.2e-26 123.6 118 58.5
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 1.6e-26 123.2 112 61.6
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 3.5e-26 122.1 152 48.7
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 6.0e-26 121.3 114 58.8
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 6.0e-26 121.3 114 58.8
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 7.8e-26 120.9 111 56.8
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 5.0e-25 118.2 112 57.1
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 6.6e-25 117.9 126 54.8
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 8.6e-25 117.5 118 55.9
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.1e-24 117.1 118 56.8
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.1e-24 117.1 118 55.1
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 1.9e-24 116.3 118 56.8
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 3.3e-24 115.5 113 57.5
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 3.3e-24 115.5 118 53.4
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 4.3e-24 115.2 118 55.9
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 5.6e-24 114.8 114 57.0
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 5.6e-24 114.8 118 55.9
Lj6g0005213 Lotus japonicus HOM05D002352 ORTHO05D003724 2.8e-23 112.5 88 68.2
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 3.6e-23 112.1 111 50.5
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 4.7e-23 111.7 153 46.4
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 8.0e-23 110.9 153 45.8
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 1.2e-21 107.1 118 48.3
HanXRQChr13g0393551 Helianthus annuus HOM05D002352 ORTHO05D003724 1.5e-21 106.7 119 52.1
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 2.9e-20 102.4 121 47.1
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 2.9e-20 102.4 117 46.2
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 8.3e-20 100.9 117 47.0
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 1.2e-18 97.1 118 48.3
TPR.G28588 Trifolium pratense HOM05D002352 ORTHO05D014906 1.6e-18 96.7 52 90.4
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 4.6e-18 95.1 110 50.9
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 1.9e-16 89.7 115 46.1
arahy.Tifrunner.gnm1.ann1.KL0F8I Arachis hypogaea HOM05D002352 ORTHO05D014906 2.3e-14 82.8 80 56.2
arahy.Tifrunner.gnm1.ann1.14M6HG Arachis hypogaea HOM05D002352 ORTHO05D000032 8.9e-14 80.9 80 58.8
SHI23480 Sapria himalayana HOM05D002352 ORTHO05D016619 3.4e-13 79.0 69 60.9
TAR636G1029 Trochodendron aralioides HOM05D002352 ORTHO05D002410 1.3e-12 77.0 71 59.2
TPR.G20335 Trifolium pratense HOM05D002352 ORTHO05D016619 1.3e-09 67.0 41 82.9
TPR.G18540 Trifolium pratense HOM05D002352 ORTHO05D016619 2.3e-09 66.2 40 85.0
MCO15G118 Micromonas commoda HOM05D002352 ORTHO05D003724 1.5e-08 63.5 104 40.4
Zm00001eb083320 Zea mays HOM05D002352 ORTHO05D016619 2.1e-07 59.7 69 52.2
HPP92_018074 Vanilla planifolia HOM05D002352 ORTHO05D003724 4.0e-06 55.5 63 52.4


User provided reference genes

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