Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 2.1e-77 292.4 155 100.0
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 8.3e-74 280.4 159 91.2
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 6.8e-68 260.8 159 84.3
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 8.9e-68 260.4 159 83.6
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 3.3e-62 241.9 159 76.7
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 4.3e-62 241.5 159 76.7
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 1.2e-61 240.0 159 75.5
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 2.8e-61 238.8 159 74.8
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 6.2e-61 237.7 159 74.8
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 3.1e-60 235.3 159 75.5
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 2.6e-59 232.3 159 74.2
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 4.4e-59 231.5 159 71.1
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 9.9e-59 230.3 159 73.6
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 1.3e-58 229.9 159 70.4
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 2.2e-58 229.2 159 69.8
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 2.9e-58 228.8 159 71.1
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 8.3e-58 227.3 156 71.2
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 1.1e-57 226.9 159 71.7
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 3.2e-57 225.3 159 69.2
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 5.4e-57 224.6 159 69.2
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 4.0e-52 208.4 159 64.2
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 5.8e-51 204.5 159 62.3
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.3e-50 203.4 159 62.3
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 2.2e-50 202.6 159 61.0
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.9e-50 202.2 164 62.8
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 2.9e-50 202.2 159 61.6
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 2.9e-50 202.2 159 61.6
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 6.4e-50 201.1 159 61.0
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.1e-49 200.3 159 61.0
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 1.1e-49 200.3 159 62.3
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 1.1e-49 200.3 159 61.0
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 1.1e-49 200.3 159 60.4
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 4.2e-49 198.4 159 59.7
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 4.2e-49 198.4 159 61.6
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 5.4e-49 198.0 164 60.4
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 5.4e-49 198.0 160 61.9
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 7.1e-49 197.6 159 59.1
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 9.2e-49 197.2 160 60.0
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 9.2e-49 197.2 159 59.1
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 9.2e-49 197.2 159 61.6
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 1.2e-48 196.8 159 59.7
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 1.2e-48 196.8 159 59.7
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.6e-48 196.4 155 61.3
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 2.1e-48 196.1 159 59.1
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 2.7e-48 195.7 160 61.9
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 3.5e-48 195.3 159 59.7
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 4.6e-48 194.9 159 59.7
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 4.6e-48 194.9 159 59.7
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 7.8e-48 194.1 160 59.4
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 7.8e-48 194.1 164 61.6
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 1.3e-47 193.4 159 57.9
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 2.3e-47 192.6 158 58.2
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 3.0e-47 192.2 159 58.5
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 3.0e-47 192.2 159 57.9
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 3.0e-47 192.2 159 57.9
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.0e-47 192.2 159 57.2
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 3.9e-47 191.8 159 57.2
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 3.9e-47 191.8 159 57.9
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 3.9e-47 191.8 162 58.0
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 6.6e-47 191.0 160 59.4
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 6.6e-47 191.0 159 59.1
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 8.7e-47 190.7 159 59.1
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 1.5e-46 189.9 160 56.9
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 1.5e-46 189.9 159 60.4
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 1.9e-46 189.5 163 58.3
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 2.5e-46 189.1 161 59.0
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 2.5e-46 189.1 159 56.6
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 4.3e-46 188.3 159 56.0
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 4.3e-46 188.3 159 58.5
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 5.6e-46 188.0 164 59.8
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 7.3e-46 187.6 162 58.6
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 9.6e-46 187.2 159 55.3
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 9.6e-46 187.2 159 56.6
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 9.6e-46 187.2 159 56.6
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 1.3e-45 186.8 159 58.5
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.3e-45 186.8 164 59.1
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.6e-45 186.4 157 58.6
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 1.6e-45 186.4 159 58.5
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 2.1e-45 186.0 163 57.1
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 2.1e-45 186.0 161 57.1
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 2.1e-45 186.0 159 56.6
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 3.6e-45 185.3 161 57.8
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 3.6e-45 185.3 167 56.9
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 3.6e-45 185.3 162 57.4
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 4.8e-45 184.9 159 57.2
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 4.8e-45 184.9 159 57.2
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 4.8e-45 184.9 159 57.2
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 6.2e-45 184.5 163 56.4
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 6.2e-45 184.5 159 56.0
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 6.2e-45 184.5 159 56.6
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.1e-44 183.7 159 56.6
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 1.1e-44 183.7 170 55.9
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 1.4e-44 183.3 170 55.9
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 1.8e-44 183.0 163 56.4
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 1.8e-44 183.0 164 56.1
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 1.8e-44 183.0 163 56.4
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 1.8e-44 183.0 163 56.4
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 1.8e-44 183.0 163 56.4
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 1.8e-44 183.0 170 55.9
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 3.1e-44 182.2 164 55.5
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 3.1e-44 182.2 163 56.4
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 4.0e-44 181.8 160 56.2
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 4.0e-44 181.8 164 55.5
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 4.0e-44 181.8 160 56.2
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 4.0e-44 181.8 164 55.5
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 4.0e-44 181.8 160 56.2
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 4.0e-44 181.8 160 56.2
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 4.0e-44 181.8 164 55.5
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 4.0e-44 181.8 160 57.5
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 5.3e-44 181.4 161 56.5
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 5.3e-44 181.4 161 56.5
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 5.3e-44 181.4 164 55.5
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 5.3e-44 181.4 160 55.6
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 6.9e-44 181.0 159 54.1
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 6.9e-44 181.0 159 59.7
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 9.0e-44 180.6 159 55.3
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 1.2e-43 180.3 164 55.5
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 2.0e-43 179.5 160 56.9
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 3.4e-43 178.7 162 55.6
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 6.0e-40 167.9 168 48.8
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 3.9e-39 165.2 162 50.0
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 8.7e-39 164.1 162 53.1
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 1.5e-38 163.3 164 48.2
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 5.3e-36 154.8 165 45.5
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 4.9e-34 148.3 111 66.7
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 1.0e-31 140.6 132 52.3
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.4e-25 120.2 170 36.5
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 4.2e-25 118.6 187 35.8
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 9.3e-25 117.5 161 36.0
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 4.6e-24 115.2 155 45.8
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.1e-20 104.0 97 52.6
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 1.4e-20 103.6 92 51.1
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 6.9e-20 101.3 166 33.7
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 2.5e-17 92.8 206 30.1
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.0e-15 85.9 51 74.5
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 9.7e-06 54.3 49 53.1


User provided reference genes

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