Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39966 Trifolium pratense HOM05D000533 ORTHO05D002807 2.3e-15 84.3 40 100.0
Medtr3g113820 Medicago truncatula HOM05D000533 ORTHO05D002807 1.5e-14 81.6 40 97.5
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 1.5e-14 81.6 40 97.5
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 1.5e-14 81.6 40 97.5
Psat0s1160g0400 Pisum sativum HOM05D000533 ORTHO05D002807 1.5e-14 81.6 40 97.5
Psat0s6989g0240 Pisum sativum HOM05D000533 ORTHO05D001069 1.5e-14 81.6 40 97.5
Psat1g050080 Pisum sativum HOM05D000533 ORTHO05D001069 1.5e-14 81.6 40 97.5
Psat3g095040 Pisum sativum HOM05D000533 ORTHO05D001069 1.5e-14 81.6 40 97.5
Psat4g172360 Pisum sativum HOM05D000533 ORTHO05D002807 1.5e-14 81.6 40 97.5
Psat6g182640 Pisum sativum HOM05D000533 ORTHO05D002807 1.5e-14 81.6 40 97.5
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 1.5e-14 81.6 40 97.5
LjContig00318g0007609 Lotus japonicus HOM05D000533 ORTHO05D002807 1.9e-14 81.3 40 95.0
LjContig00319g0005103 Lotus japonicus HOM05D000533 ORTHO05D002807 1.9e-14 81.3 40 95.0
Lj2C1238G35 Lonicera japonica HOM05D000533 ORTHO05D001069 2.5e-14 80.9 40 95.0
Lju5009P0T26 Lonicera japonica HOM05D000533 ORTHO05D002807 2.5e-14 80.9 40 95.0
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 7.3e-14 79.3 40 95.0
Psat0s1160g0320 Pisum sativum HOM05D000533 ORTHO05D001069 7.3e-14 79.3 40 95.0
Psat0s411g0120 Pisum sativum HOM05D000533 ORTHO05D002807 1.2e-13 78.6 40 95.0
Psat1g104960 Pisum sativum HOM05D000533 ORTHO05D002807 1.6e-13 78.2 40 92.5
Lalb_Chr07g0191821 Lupinus albus HOM05D000533 ORTHO05D001069 2.1e-13 77.8 40 90.0
Psat0s1586g0320 Pisum sativum HOM05D000533 ORTHO05D002807 2.1e-13 77.8 40 92.5
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 2.1e-13 77.8 40 90.0
SabraPtG0005900 Salix brachista HOM05D000533 ORTHO05D001069 2.1e-13 77.8 40 90.0
DCAR_032541 Daucus carota HOM05D000533 ORTHO05D002807 4.7e-13 76.6 40 90.0
Migut.D01248 Erythranthe guttata HOM05D000533 ORTHO05D001069 4.7e-13 76.6 40 90.0
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 4.7e-13 76.6 40 90.0
HanXRQChr00c0336g0573691 Helianthus annuus HOM05D000533 ORTHO05D002807 4.7e-13 76.6 40 90.0
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 4.7e-13 76.6 40 90.0
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 4.7e-13 76.6 40 90.0
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 4.7e-13 76.6 40 90.0
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 4.7e-13 76.6 40 90.0
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 4.7e-13 76.6 40 90.0
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 4.7e-13 76.6 40 90.0
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 4.7e-13 76.6 40 90.0
Hma1.2p1_0660F.1_g197440 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 4.7e-13 76.6 40 90.0
Hma1.2p1_2753F.1_g327925 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 4.7e-13 76.6 40 90.0
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 4.7e-13 76.6 40 90.0
Sed0004290 Sechium edule HOM05D000533 ORTHO05D002807 6.1e-13 76.3 40 87.5
Sed0023589 Sechium edule HOM05D000533 ORTHO05D002807 6.1e-13 76.3 40 87.5
Sed0023659 Sechium edule HOM05D000533 ORTHO05D002807 6.1e-13 76.3 40 87.5
ATR0043G018 Amborella trichopoda HOM05D000533 ORTHO05D001069 8.0e-13 75.9 40 87.5
CSS0030738 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D001069 8.0e-13 75.9 40 87.5
Gohir.1Z049694 Gossypium hirsutum HOM05D000533 ORTHO05D001069 8.0e-13 75.9 40 87.5
Gohir.A06G090050 Gossypium hirsutum HOM05D000533 ORTHO05D002807 8.0e-13 75.9 40 87.5
Gohir.D11G334151 Gossypium hirsutum HOM05D000533 ORTHO05D001069 8.0e-13 75.9 40 87.5
SalBow1G0006 Salvia bowleyana HOM05D000533 ORTHO05D002807 8.0e-13 75.9 40 87.5
FAN01G2990 Fragaria x ananassa HOM05D000533 ORTHO05D002807 1.0e-12 75.5 40 87.5
arahy.Tifrunner.gnm1.ann1.1262SD Arachis hypogaea HOM05D000533 ORTHO05D002807 1.4e-12 75.1 40 87.5
arahy.Tifrunner.gnm1.ann1.510BCU Arachis hypogaea HOM05D000533 ORTHO05D002807 1.4e-12 75.1 40 87.5
MELO3C027055.2 Cucumis melo HOM05D000533 ORTHO05D002807 1.4e-12 75.1 40 85.0
PGR111G0022 Punica granatum HOM05D000533 ORTHO05D002807 1.4e-12 75.1 40 85.0
EL10Ac6g14288 Beta vulgaris HOM05D000533 ORTHO05D002807 1.8e-12 74.7 40 90.0
EL10As15g24097 Beta vulgaris HOM05D000533 ORTHO05D002807 1.8e-12 74.7 40 90.0
Gohir.A01G139542 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.8e-12 74.7 40 85.0
GSVIVG01012613001 Vitis vinifera HOM05D000533 ORTHO05D001069 1.8e-12 74.7 40 87.5
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 2.3e-12 74.3 40 87.5
Ah.10g027030 Amaranthus hybridus HOM05D000533 ORTHO05D002807 3.0e-12 73.9 40 87.5
Ah.10g027260 Amaranthus hybridus HOM05D000533 ORTHO05D001069 3.0e-12 73.9 40 87.5
Ah.10g027700 Amaranthus hybridus HOM05D000533 ORTHO05D001069 3.0e-12 73.9 40 87.5
ATR0924G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 3.0e-12 73.9 40 85.0
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 3.0e-12 73.9 40 87.5
vmacro22393 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 3.0e-12 73.9 40 85.0
vmacro22419 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 3.0e-12 73.9 40 85.0
Gorai.005G106600 Gossypium raimondii HOM05D000533 ORTHO05D002807 4.0e-12 73.6 40 85.0
PSO548G0012 Papaver somniferum HOM05D000533 ORTHO05D002807 5.2e-12 73.2 40 85.0
arahy.Tifrunner.gnm1.ann1.840LER Arachis hypogaea HOM05D000533 ORTHO05D002807 6.8e-12 72.8 39 87.2
CAN.G1298.18 Capsicum annuum HOM05D000533 ORTHO05D002807 6.8e-12 72.8 40 87.5
CAN.G1470.9 Capsicum annuum HOM05D000533 ORTHO05D002807 6.8e-12 72.8 40 87.5
CAN.G1526.1 Capsicum annuum HOM05D000533 ORTHO05D002807 6.8e-12 72.8 40 87.5
Solyc00g500041.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 6.8e-12 72.8 40 87.5
Solyc00g500086.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 6.8e-12 72.8 40 87.5
Solyc00g500123.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 6.8e-12 72.8 40 87.5
Solyc00g500193.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 6.8e-12 72.8 40 87.5
Nn064s42206 Nelumbo nucifera HOM05D000533 ORTHO05D002807 8.9e-12 72.4 40 85.0
Nn7g37744 Nelumbo nucifera HOM05D000533 ORTHO05D002807 8.9e-12 72.4 40 85.0
AL9U11959 Arabidopsis lyrata HOM05D000533 ORTHO05D002807 1.2e-11 72.0 40 87.5
ATCG01100 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 1.2e-11 72.0 40 87.5
CARHR282470 Cardamine hirsuta HOM05D000533 ORTHO05D002807 1.2e-11 72.0 40 87.5
Gorai.009G395200 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.2e-11 72.0 40 82.5
Medtr0002s0150 Medicago truncatula HOM05D000533 ORTHO05D001069 1.2e-11 72.0 40 80.0
Gohir.A04G053078 Gossypium hirsutum HOM05D000533 ORTHO05D001069 2.0e-11 71.2 40 82.5
Gohir.D02G093940 Gossypium hirsutum HOM05D000533 ORTHO05D002807 2.0e-11 71.2 39 84.6
PGSC0003DMG402008783 Solanum tuberosum HOM05D000533 ORTHO05D002807 2.0e-11 71.2 40 85.0
Lj2C1229T2 Lonicera japonica HOM05D000533 ORTHO05D002807 3.4e-11 70.5 40 80.0
C02p28820 Brassica napus HOM05D000533 ORTHO05D002807 4.4e-11 70.1 40 85.0
C05p53830 Brassica napus HOM05D000533 ORTHO05D002807 4.4e-11 70.1 40 85.0
C09p40310 Brassica napus HOM05D000533 ORTHO05D002807 4.4e-11 70.1 40 85.0
BolC2t08927H Brassica oleracea HOM05D000533 ORTHO05D002807 4.4e-11 70.1 40 85.0
BolC2t10600H Brassica oleracea HOM05D000533 ORTHO05D002807 4.4e-11 70.1 40 85.0
BolSC35t60689H Brassica oleracea HOM05D000533 ORTHO05D002807 4.4e-11 70.1 40 85.0
BolSC35t60707H Brassica oleracea HOM05D000533 ORTHO05D002807 4.4e-11 70.1 40 85.0
BolSC44t60825H Brassica oleracea HOM05D000533 ORTHO05D002807 4.4e-11 70.1 40 85.0
BolSC45t60906H Brassica oleracea HOM05D000533 ORTHO05D002807 4.4e-11 70.1 40 85.0
BolSC46t60955H Brassica oleracea HOM05D000533 ORTHO05D002807 4.4e-11 70.1 40 85.0
BolSC47t61062H Brassica oleracea HOM05D000533 ORTHO05D002807 4.4e-11 70.1 40 85.0
BraSC103t45432Z Brassica rapa HOM05D000533 ORTHO05D002807 4.4e-11 70.1 40 85.0
BraSC143t45657Z Brassica rapa HOM05D000533 ORTHO05D002807 4.4e-11 70.1 40 85.0
BraSC25t45913Z Brassica rapa HOM05D000533 ORTHO05D002807 4.4e-11 70.1 40 85.0
BraSC59t46529Z Brassica rapa HOM05D000533 ORTHO05D002807 4.4e-11 70.1 40 85.0
Gohir.D04G093016 Gossypium hirsutum HOM05D000533 ORTHO05D002807 4.4e-11 70.1 40 80.0
Lsat_1_v5_gn_5_65981 Lactuca sativa HOM05D000533 ORTHO05D001069 4.4e-11 70.1 39 84.6
Lsat_1_v5_gn_1_58461 Lactuca sativa HOM05D000533 ORTHO05D002807 5.7e-11 69.7 33 93.9
AUR62015545 Chenopodium quinoa HOM05D000533 ORTHO05D001069 7.5e-11 69.3 40 82.5
Lsat_1_v5_gn_8_103040 Lactuca sativa HOM05D000533 ORTHO05D002807 7.5e-11 69.3 39 84.6
RcHm_v2.0_Chr3g0470801 Rosa chinensis HOM05D000533 ORTHO05D002807 7.5e-11 69.3 40 80.0
BolC9t56913H Brassica oleracea HOM05D000533 ORTHO05D002807 1.3e-10 68.6 40 82.5
CAN.G965.4 Capsicum annuum HOM05D000533 ORTHO05D002807 1.3e-10 68.6 40 82.5
Gohir.D06G147033 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.3e-10 68.6 39 82.1
Nitab4.5_0006502g0040 Nicotiana tabacum HOM05D000533 ORTHO05D002807 1.3e-10 68.6 39 84.6
CAN.G1045.10 Capsicum annuum HOM05D000533 ORTHO05D002807 2.2e-10 67.8 40 82.5
Gorai.003G091000 Gossypium raimondii HOM05D000533 ORTHO05D002807 2.9e-10 67.4 40 80.0
arahy.Tifrunner.gnm1.ann1.2N2B18 Arachis hypogaea HOM05D008259 ORTHO05D010449 4.9e-10 66.6 36 83.3
Nitab4.5_0006409g0090 Nicotiana tabacum HOM05D000533 ORTHO05D002807 4.9e-10 66.6 40 82.5
SEGI_20811 Sequoiadendron giganteum HOM05D000533 ORTHO05D002807 4.9e-10 66.6 40 77.5
Sopen02g002710 Solanum pennellii HOM05D000533 ORTHO05D002807 4.9e-10 66.6 39 82.1
Oeu012820.1 Olea europaea HOM05D000533 ORTHO05D002807 6.4e-10 66.2 40 80.0
EL10As15g24139 Beta vulgaris HOM05D000533 ORTHO05D002807 1.8e-09 64.7 40 80.0
MELO3C031836.2 Cucumis melo HOM05D000533 ORTHO05D002807 1.8e-09 64.7 39 74.4
Sed0023687 Sechium edule HOM05D000533 ORTHO05D002807 3.2e-09 63.9 33 84.8
Solyc11g021233.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 3.2e-09 63.9 40 77.5
CAN.G30.8 Capsicum annuum HOM05D000533 ORTHO05D002807 4.1e-09 63.5 39 76.9
Potri.013G074800 Populus trichocarpa HOM05D000533 ORTHO05D002807 4.1e-09 63.5 39 79.5
CAN.G127.11 Capsicum annuum HOM05D000533 ORTHO05D002807 9.2e-09 62.4 40 72.5
HanXRQChr01g0020051 Helianthus annuus HOM05D000533 ORTHO05D002807 4.6e-08 60.1 28 96.4
CAN.G262.8 Capsicum annuum HOM05D000533 ORTHO05D002807 5.9e-08 59.7 39 74.4
Nitab4.5_0000660g0060 Nicotiana tabacum HOM05D000533 ORTHO05D002807 1.0e-07 58.9 40 72.5
ATR0535G001 Amborella trichopoda HOM05D000533 ORTHO05D002807 1.3e-07 58.5 30 83.3
Gohir.D08G207450 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.7e-07 58.2 39 79.5
Gohir.D11G339850 Gossypium hirsutum HOM05D000533 ORTHO05D002807 3.9e-07 57.0 40 70.0
Nitab4.5_0000843g0030 Nicotiana tabacum HOM05D000533 ORTHO05D002807 6.6e-07 56.2 30 83.3
SMO086G0018 Selaginella moellendorffii HOM05D000533 ORTHO05D002807 1.5e-06 55.1 40 65.0
Gorai.007G369400 Gossypium raimondii HOM05D000533 ORTHO05D002807 3.3e-06 53.9 40 67.5


User provided reference genes

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