Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27606 Trifolium pratense HOM05D000084 ORTHO05D036495 8.3e-27 122.9 58 100.0
TPR.G39961 Trifolium pratense HOM05D000084 ORTHO05D036495 8.3e-27 122.9 58 100.0
Medtr6g080470 Medicago truncatula HOM05D000084 ORTHO05D004328 4.4e-20 100.5 60 81.7
Ca_25306_v3 Cicer arietinum L. HOM05D000084 ORTHO05D004328 7.5e-20 99.8 60 80.0
Lalb_Chr24g0398001 Lupinus albus HOM05D000084 ORTHO05D004328 3.2e-18 94.4 60 76.7
Lalb_Chr22g0353311 Lupinus albus HOM05D000084 ORTHO05D004328 9.2e-18 92.8 55 80.0
Lalb_Chr14g0370801 Lupinus albus HOM05D000084 ORTHO05D004328 1.6e-17 92.0 60 76.7
Lj2g0012258 Lotus japonicus HOM05D000084 ORTHO05D004328 2.7e-17 91.3 61 77.0
Psat1g031400 Pisum sativum HOM05D000084 ORTHO05D004328 2.7e-17 91.3 61 73.8
TPR.G22790 Trifolium pratense HOM05D000084 ORTHO05D004328 4.6e-17 90.5 55 74.5
arahy.Tifrunner.gnm1.ann1.PC8ILL Arachis hypogaea HOM05D000084 ORTHO05D004328 1.0e-16 89.4 54 77.8
arahy.Tifrunner.gnm1.ann1.QB4P8A Arachis hypogaea HOM05D000084 ORTHO05D004328 1.0e-16 89.4 54 77.8
Glyma.05G243000 Glycine max HOM05D000084 ORTHO05D004328 3.9e-16 87.4 60 68.3
Lj1g0000744 Lotus japonicus HOM05D000084 ORTHO05D004328 6.6e-16 86.7 61 70.5
Glyma.07G100200 Glycine max HOM05D000084 ORTHO05D004328 8.6e-16 86.3 59 71.2
VMungo0251G1657 Vigna mungo HOM05D000084 ORTHO05D004328 1.5e-15 85.5 60 66.7
Glyma.09G178500 Glycine max HOM05D000084 ORTHO05D004328 3.3e-15 84.3 59 69.5
Medtr3g054080 Medicago truncatula HOM05D000084 ORTHO05D004328 1.2e-14 82.4 53 71.7
Phvul.004G152000 Phaseolus vulgaris HOM05D000084 ORTHO05D004328 2.1e-14 81.6 59 69.5
arahy.Tifrunner.gnm1.ann1.IV9MYI Arachis hypogaea HOM05D000084 ORTHO05D004328 2.8e-14 81.3 61 68.9
VMungo0464G0358 Vigna mungo HOM05D000084 ORTHO05D004328 2.8e-14 81.3 59 69.5
CiPaw.10G063700 Carya illinoinensis HOM05D000084 ORTHO05D004328 5.2e-13 77.0 60 60.0
Prupe.5G227900 Prunus persica HOM05D000084 ORTHO05D004328 8.9e-13 76.3 59 59.3
arahy.Tifrunner.gnm1.ann1.S5Z9V6 Arachis hypogaea HOM05D000084 ORTHO05D004328 1.2e-12 75.9 61 63.9
TWI15G1070 Tripterygium wilfordii HOM05D000084 ORTHO05D004328 3.4e-12 74.3 60 58.3
Eucgr.K02247 Eucalyptus grandis HOM05D000084 ORTHO05D004328 4.4e-12 73.9 60 56.7
FAN13G2150 Fragaria x ananassa HOM05D000084 ORTHO05D004328 5.8e-12 73.6 60 56.7
FAN04G2301 Fragaria x ananassa HOM05D000084 ORTHO05D004328 9.8e-12 72.8 60 55.0
Gohir.A09G174500 Gossypium hirsutum HOM05D000084 ORTHO05D004328 1.3e-11 72.4 60 61.7
FAN08G0286 Fragaria x ananassa HOM05D000084 ORTHO05D004328 1.7e-11 72.0 60 56.7
RcHm_v2.0_Chr7g0179111 Rosa chinensis HOM05D000084 ORTHO05D004328 1.7e-11 72.0 60 55.0
Sed0022626 Sechium edule HOM05D000084 ORTHO05D004328 1.7e-11 72.0 60 55.0
MD14G1232000 Malus domestica HOM05D000084 ORTHO05D004328 2.2e-11 71.6 60 60.0
FvH4_5g16910 Fragaria vesca HOM05D000084 ORTHO05D004328 4.9e-11 70.5 60 55.0
FAN18G1645 Fragaria x ananassa HOM05D000084 ORTHO05D004328 4.9e-11 70.5 60 55.0
Thecc.03G046800 Theobroma cacao HOM05D000084 ORTHO05D004328 6.4e-11 70.1 60 61.7
Manes.06G009200 Manihot esculenta HOM05D000084 ORTHO05D004328 8.3e-11 69.7 60 56.7
TPR.G6102 Trifolium pratense HOM05D000084 ORTHO05D004328 8.3e-11 69.7 55 63.6
CsaV3_1G004160 Cucumis sativus L. HOM05D000084 ORTHO05D004328 1.4e-10 68.9 60 55.0
Gohir.D09G171600 Gossypium hirsutum HOM05D000084 ORTHO05D004328 1.4e-10 68.9 60 60.0
Gorai.006G193300 Gossypium raimondii HOM05D000084 ORTHO05D004328 1.4e-10 68.9 60 60.0
Potri.014G079100 Populus trichocarpa HOM05D000084 ORTHO05D004328 1.9e-10 68.6 60 56.7
Sabra14G0057300 Salix brachista HOM05D000084 ORTHO05D004328 1.9e-10 68.6 60 55.0
TWI60G0025 Tripterygium wilfordii HOM05D000084 ORTHO05D004328 1.9e-10 68.6 60 55.0
Cfa000697 Carpinus fangiana HOM05D000084 ORTHO05D004328 4.1e-10 67.4 60 53.3
Haze_06092 Corylus avellana HOM05D000084 ORTHO05D004328 4.1e-10 67.4 60 53.3
MELO3C017342.2 Cucumis melo HOM05D000084 ORTHO05D004328 4.1e-10 67.4 60 53.3
ClCG06G014500 Citrullus lanatus HOM05D000084 ORTHO05D004328 5.4e-10 67.0 60 51.7
Sabra12G0035800 Salix brachista HOM05D000084 ORTHO05D004328 5.4e-10 67.0 60 53.3
Gohir.D09G052200 Gossypium hirsutum HOM05D000084 ORTHO05D004328 7.1e-10 66.6 60 56.7
Gorai.006G057400 Gossypium raimondii HOM05D000084 ORTHO05D004328 7.1e-10 66.6 60 56.7
Atru.chr5.2904 Acer truncatum HOM05D000084 ORTHO05D004328 9.2e-10 66.2 60 53.3
Atru.chr9.941 Acer truncatum HOM05D000084 ORTHO05D004328 1.6e-09 65.5 60 53.3
Aqoxy1G01318 Aquilegia oxysepala HOM05D000084 ORTHO05D004328 1.6e-09 65.5 60 50.0
Gohir.A09G051100 Gossypium hirsutum HOM05D000084 ORTHO05D004328 1.6e-09 65.5 60 56.7
PGR044G2468 Punica granatum HOM05D000084 ORTHO05D004328 1.6e-09 65.5 60 58.3
Ciclev10008533m.g Citrus clementina HOM05D000084 ORTHO05D004328 2.1e-09 65.1 60 51.7
Potri.012G052100 Populus trichocarpa HOM05D000084 ORTHO05D004328 2.1e-09 65.1 60 51.7
GSVIVG01008372001 Vitis vinifera HOM05D000084 ORTHO05D004328 2.7e-09 64.7 60 53.3
MD06G1222900 Malus domestica HOM05D000084 ORTHO05D004328 3.5e-09 64.3 60 58.3
Duzib068G1312 Durio zibethinus HOM05D000084 ORTHO05D004328 6.0e-09 63.5 60 55.0
Sed0001871 Sechium edule HOM05D000084 ORTHO05D004328 7.8e-09 63.2 60 51.7
Nn4g24029 Nelumbo nucifera HOM05D000084 ORTHO05D004328 1.0e-08 62.8 57 47.4
Dinv13553 Davidia involucrata HOM05D000084 ORTHO05D004328 1.3e-08 62.4 60 53.3
Oeu061231.1 Olea europaea HOM05D000084 ORTHO05D004328 2.3e-08 61.6 60 56.7
MSTRG.9283 Avicennia marina HOM05D000084 ORTHO05D004328 3.0e-08 61.2 60 55.0
Hma1.2p1_2154F.1_g315320 Hydrangea macrophylla HOM05D000084 ORTHO05D004328 3.0e-08 61.2 59 52.5
Migut.I00408 Erythranthe guttata HOM05D000084 ORTHO05D004328 3.9e-08 60.8 60 55.0
Solyc08g081280.3 Solanum lycopersicum HOM05D000084 ORTHO05D004328 3.9e-08 60.8 60 53.3
Sopen08g029590 Solanum pennellii HOM05D000084 ORTHO05D004328 3.9e-08 60.8 60 53.3
TAR629G0907 Trochodendron aralioides HOM05D000084 ORTHO05D004328 6.6e-08 60.1 57 45.6
Actinidia17118 Actinidia chinensis HOM05D000084 ORTHO05D004328 8.6e-08 59.7 60 50.0
PGSC0003DMG400012334 Solanum tuberosum HOM05D000084 ORTHO05D004328 1.1e-07 59.3 60 51.7
vmacro17520 Vaccinium macrocarpon HOM05D000084 ORTHO05D004328 1.5e-07 58.9 60 50.0
vmacro23486 Vaccinium macrocarpon HOM05D000084 ORTHO05D004328 1.5e-07 58.9 60 50.0
SalBow5G4682 Salvia bowleyana HOM05D000084 ORTHO05D004328 1.9e-07 58.5 60 51.7
CAN.G532.3 Capsicum annuum HOM05D000084 ORTHO05D004328 2.5e-07 58.2 60 51.7
Peaxi162Scf00074g02034 Petunia axillaris HOM05D000084 ORTHO05D004328 2.5e-07 58.2 60 51.7
Hund02338 Selenicereus undatus HOM05D000084 ORTHO05D004328 2.5e-07 58.2 54 53.7
Rhsim08G0129200 Rhododendron simsii HOM05D000084 ORTHO05D004328 4.3e-07 57.4 60 48.3
EL10Ac5g11508 Beta vulgaris HOM05D000084 ORTHO05D004328 5.6e-07 57.0 54 48.1
CiPaw.09G075800 Carya illinoinensis HOM05D000084 ORTHO05D004328 7.3e-07 56.6 60 53.3
Oeu031798.1 Olea europaea HOM05D000084 ORTHO05D004328 9.5e-07 56.2 60 51.7
Cc04_g06700 Coffea canephora HOM05D000084 ORTHO05D004328 1.2e-06 55.8 60 46.7
AUR62029943 Chenopodium quinoa HOM05D000084 ORTHO05D004328 2.1e-06 55.1 54 48.1
DCAR_011379 Daucus carota HOM05D000084 ORTHO05D004328 2.8e-06 54.7 60 53.3
Nitab4.5_0001522g0110 Nicotiana tabacum HOM05D000084 ORTHO05D004328 8.1e-06 53.1 60 50.0


User provided reference genes

Program Settings