Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16493 Trifolium pratense HOM05D000136 ORTHO05D000080 4.3e-18 93.6 46 100.0
TPR.G39928 Trifolium pratense HOM05D000136 ORTHO05D000080 4.3e-18 93.6 46 100.0
TPR.G38883 Trifolium pratense HOM05D000136 ORTHO05D000080 4.7e-17 90.1 46 95.7
TPR.G40573 Trifolium pratense HOM05D000136 ORTHO05D000080 4.7e-17 90.1 46 95.7
Psat6g021800 Pisum sativum HOM05D000136 ORTHO05D000080 1.8e-16 88.2 46 93.5
Psat6g021840 Pisum sativum HOM05D000136 ORTHO05D000080 8.9e-16 85.9 47 93.6
Psat6g022160 Pisum sativum HOM05D000136 ORTHO05D000080 7.5e-15 82.8 47 89.4
Psat6g022240 Pisum sativum HOM05D000136 ORTHO05D000080 7.5e-15 82.8 47 89.4
Medtr1g015165 Medicago truncatula HOM05D000136 ORTHO05D000080 1.3e-14 82.0 46 87.0
Lj5g0004770 Lotus japonicus HOM05D000136 ORTHO05D000080 1.6e-12 75.1 46 73.9
Lj5g0025088 Lotus japonicus HOM05D000136 ORTHO05D000080 6.6e-11 69.7 47 74.5
TPR.G38923 Trifolium pratense HOM05D000136 ORTHO05D000080 1.9e-10 68.2 47 80.9
Lj5g0008929 Lotus japonicus HOM05D000136 ORTHO05D000080 5.6e-10 66.6 46 69.6
Glyma.14G099900 Glycine max HOM05D000136 ORTHO05D000080 9.5e-10 65.9 46 63.0
CiPaw.15G088300 Carya illinoinensis HOM05D000136 ORTHO05D000080 1.2e-09 65.5 46 69.6
CiPaw.15G088400 Carya illinoinensis HOM05D000136 ORTHO05D000080 1.6e-09 65.1 46 69.6
VMungo0647G2315 Vigna mungo HOM05D000136 ORTHO05D000080 1.6e-09 65.1 46 63.0
Glyma.17G224900 Glycine max HOM05D000136 ORTHO05D000080 2.1e-09 64.7 46 63.0
Phvul.001G039800 Phaseolus vulgaris HOM05D000136 ORTHO05D000080 2.1e-09 64.7 46 65.2
CiPaw.15G088500 Carya illinoinensis HOM05D000136 ORTHO05D000080 2.8e-09 64.3 46 67.4
CiPaw.15G087800 Carya illinoinensis HOM05D000136 ORTHO05D000080 3.6e-09 63.9 46 67.4
Glyma.17G225000 Glycine max HOM05D000136 ORTHO05D000080 3.6e-09 63.9 46 60.9
Phvul.001G039700 Phaseolus vulgaris HOM05D000136 ORTHO05D000080 3.6e-09 63.9 46 63.0
CiPaw.15G087900 Carya illinoinensis HOM05D000136 ORTHO05D000080 1.1e-08 62.4 46 65.2
CiPaw.15G088200 Carya illinoinensis HOM05D000136 ORTHO05D000080 1.4e-08 62.0 46 65.2
Glyma.14G100000 Glycine max HOM05D000136 ORTHO05D000080 1.4e-08 62.0 46 58.7
Psat5g035280 Pisum sativum HOM05D000136 ORTHO05D000080 2.4e-08 61.2 46 69.6
Lj5g0020031 Lotus japonicus HOM05D000136 ORTHO05D000080 3.1e-08 60.8 47 68.1
Medtr3g104780 Medicago truncatula HOM05D000136 ORTHO05D000080 4.0e-08 60.5 46 63.0
PGR031G3612 Punica granatum HOM05D000136 ORTHO05D000080 4.0e-08 60.5 46 63.0
Ca_15844_v3 Cicer arietinum L. HOM05D000136 ORTHO05D000080 5.2e-08 60.1 46 63.0
Duzib168G0689 Durio zibethinus HOM05D000136 ORTHO05D000080 6.8e-08 59.7 46 65.2
Migut.A00100 Erythranthe guttata HOM05D000136 ORTHO05D000080 6.8e-08 59.7 46 69.6
Sed0005212 Sechium edule HOM05D000136 ORTHO05D000080 6.8e-08 59.7 46 69.6
TPR.G3526 Trifolium pratense HOM05D000136 ORTHO05D000080 6.8e-08 59.7 46 63.0
Lj1g0005390 Lotus japonicus HOM05D000136 ORTHO05D000080 1.2e-07 58.9 46 67.4
Psat5g035320 Pisum sativum HOM05D000136 ORTHO05D000080 1.5e-07 58.5 46 63.0
TAR624G1204 Trochodendron aralioides HOM05D000136 ORTHO05D000080 1.5e-07 58.5 46 65.2
RcHm_v2.0_Chr6g0311451 Rosa chinensis HOM05D000136 ORTHO05D000080 2.0e-07 58.2 46 63.0
RcHm_v2.0_Chr6g0311461 Rosa chinensis HOM05D000136 ORTHO05D000080 2.0e-07 58.2 46 58.7
CANSAT21G0693 Cannabis sativa HOM05D000136 ORTHO05D000080 2.6e-07 57.8 46 58.7
Psat5g035240 Pisum sativum HOM05D000136 ORTHO05D000080 2.6e-07 57.8 46 65.2
Manes.16G083600 Manihot esculenta HOM05D000136 ORTHO05D000080 3.4e-07 57.4 46 63.0
TWI32G0452 Tripterygium wilfordii HOM05D000136 ORTHO05D000080 3.4e-07 57.4 46 58.7
CiPaw.15G088000 Carya illinoinensis HOM05D000136 ORTHO05D000080 4.4e-07 57.0 46 58.7
Hma1.2p1_0196F.1_g084980 Hydrangea macrophylla HOM05D000136 ORTHO05D000080 4.4e-07 57.0 46 56.5
Hma1.2p1_0231F.1_g097580 Hydrangea macrophylla HOM05D000136 ORTHO05D000080 4.4e-07 57.0 46 56.5
Nitab4.5_0011739g0010 Nicotiana tabacum HOM05D000136 ORTHO05D000080 5.8e-07 56.6 46 63.0
Potri.006G223900 Populus trichocarpa HOM05D000136 ORTHO05D000080 5.8e-07 56.6 46 67.4
Rhsim05G0073400 Rhododendron simsii HOM05D000136 ORTHO05D000080 5.8e-07 56.6 49 59.2
SHI51398 Sapria himalayana HOM05D000136 ORTHO05D000080 5.8e-07 56.6 46 63.0
TWI34G1479 Tripterygium wilfordii HOM05D000136 ORTHO05D000080 5.8e-07 56.6 46 56.5
Gohir.A07G020900 Gossypium hirsutum HOM05D000136 ORTHO05D000080 7.6e-07 56.2 46 58.7
Sed0012346 Sechium edule HOM05D000136 ORTHO05D000080 7.6e-07 56.2 46 63.0
Atru.chr7.1903 Acer truncatum HOM05D000136 ORTHO05D000080 9.9e-07 55.8 46 63.0
Gohir.D07G020600 Gossypium hirsutum HOM05D000136 ORTHO05D000080 9.9e-07 55.8 46 58.7
Gorai.001G021400 Gossypium raimondii HOM05D000136 ORTHO05D000080 9.9e-07 55.8 46 58.7
Hma1.2p1_0196F.1_g084960 Hydrangea macrophylla HOM05D000136 ORTHO05D000080 9.9e-07 55.8 46 56.5
Ciclev10009756m.g Citrus clementina HOM05D000136 ORTHO05D000080 1.3e-06 55.5 47 59.6
FvH4_2g31371 Fragaria vesca HOM05D000136 ORTHO05D000080 1.3e-06 55.5 46 60.9
FAN24G1095 Fragaria x ananassa HOM05D000136 ORTHO05D000080 1.3e-06 55.5 46 60.9
SHI37102 Sapria himalayana HOM05D000136 ORTHO05D000080 1.3e-06 55.5 46 63.0
Haze_02386 Corylus avellana HOM05D000136 ORTHO05D000080 1.7e-06 55.1 46 65.2
SHI37367 Sapria himalayana HOM05D000002 ORTHO05D000080 1.7e-06 55.1 46 60.9
Actinidia29317 Actinidia chinensis HOM05D000136 ORTHO05D000080 2.2e-06 54.7 46 56.5
Cfa018001 Carpinus fangiana HOM05D000136 ORTHO05D000080 2.2e-06 54.7 46 54.3
Lalb_Chr23g0267941 Lupinus albus HOM05D000136 ORTHO05D000080 2.2e-06 54.7 46 56.5
Oeu034192.1 Olea europaea HOM05D000136 ORTHO05D000080 2.2e-06 54.7 46 60.9
Actinidia15015 Actinidia chinensis HOM05D000136 ORTHO05D000080 2.9e-06 54.3 46 56.5
SalBow4G1517 Salvia bowleyana HOM05D000136 ORTHO05D000080 2.9e-06 54.3 47 61.7
TWI63G1578 Tripterygium wilfordii HOM05D000136 ORTHO05D000080 2.9e-06 54.3 46 56.5
Nitab4.5_0000286g0070 Nicotiana tabacum HOM05D000136 ORTHO05D000080 3.8e-06 53.9 46 63.0
Cfa005002 Carpinus fangiana HOM05D000136 ORTHO05D000080 4.9e-06 53.5 46 65.2
COL.COLO4_21109 Corchorus olitorius HOM05D000136 ORTHO05D000080 4.9e-06 53.5 46 54.3
Lalb_Chr08g0244901 Lupinus albus HOM05D000136 ORTHO05D000080 4.9e-06 53.5 46 60.9
Nitab4.5_0000286g0060 Nicotiana tabacum HOM05D000136 ORTHO05D000080 4.9e-06 53.5 46 63.0
vmacro01412 Vaccinium macrocarpon HOM05D000136 ORTHO05D000080 4.9e-06 53.5 46 56.5
Haze_18136 Corylus avellana HOM05D000136 ORTHO05D000080 6.4e-06 53.1 46 60.9
Hma1.2p1_0196F.1_g085000 Hydrangea macrophylla HOM05D000136 ORTHO05D000080 6.4e-06 53.1 48 56.2
Hma1.2p1_0196F.1_g085030 Hydrangea macrophylla HOM05D000136 ORTHO05D000080 6.4e-06 53.1 51 54.9
QL02p000387 Quercus lobata HOM05D000136 ORTHO05D000080 6.4e-06 53.1 47 63.8
Thecc.09G059400 Theobroma cacao HOM05D000136 ORTHO05D000080 6.4e-06 53.1 46 54.3
vmacro01411 Vaccinium macrocarpon HOM05D000136 ORTHO05D000080 6.4e-06 53.1 46 56.5
FAN27G1490 Fragaria x ananassa HOM05D000136 ORTHO05D000080 8.4e-06 52.8 46 56.5
Glyma.04G054400 Glycine max HOM05D000136 ORTHO05D000080 8.4e-06 52.8 46 56.5
Nitab4.5_0000286g0050 Nicotiana tabacum HOM05D000136 ORTHO05D000080 8.4e-06 52.8 46 60.9
Rhsim12G0087000 Rhododendron simsii HOM05D000136 ORTHO05D000080 8.4e-06 52.8 47 59.6


User provided reference genes

Program Settings