Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39921 Trifolium pratense HOM05D003043 ORTHO05D003652 1.1e-98 363.2 179 100.0
TPR.G28610 Trifolium pratense HOM05D003043 ORTHO05D003652 4.2e-77 291.6 197 78.7
TPR.G6840 Trifolium pratense HOM05D003043 ORTHO05D003652 1.2e-76 290.0 199 77.9
Medtr2g097700 Medicago truncatula HOM05D003043 ORTHO05D003652 5.4e-69 264.6 197 70.1
Ca_01305_v3 Cicer arietinum L. HOM05D003043 ORTHO05D003652 3.0e-67 258.8 197 70.1
Lj3g0007907 Lotus japonicus HOM05D003043 ORTHO05D003652 3.3e-58 228.8 197 58.4
arahy.Tifrunner.gnm1.ann1.0C0BSE Arachis hypogaea HOM05D003043 ORTHO05D003652 2.4e-56 222.6 197 56.9
arahy.Tifrunner.gnm1.ann1.PZH5ZT Arachis hypogaea HOM05D003043 ORTHO05D003652 2.4e-56 222.6 197 56.9
Glyma.13G338700 Glycine max HOM05D003043 ORTHO05D003652 2.4e-56 222.6 185 58.9
CSS0005170 Camellia sinensis var. sinensis HOM05D003043 ORTHO05D003652 1.2e-55 220.3 191 56.5
Lalb_Chr22g0352461 Lupinus albus HOM05D003043 ORTHO05D003652 1.2e-55 220.3 197 56.3
Glyma.15G035600 Glycine max HOM05D003043 ORTHO05D003652 2.6e-55 219.2 187 57.2
Phvul.L007943 Phaseolus vulgaris HOM05D003043 ORTHO05D003652 2.6e-55 219.2 187 57.2
VMungo1080G0243 Vigna mungo HOM05D003043 ORTHO05D003652 5.8e-55 218.0 187 56.7
Dinv34276 Davidia involucrata HOM05D003043 ORTHO05D003652 7.6e-55 217.6 187 56.1
Potri.001G072800 Populus trichocarpa HOM05D003043 ORTHO05D003652 7.6e-55 217.6 187 57.8
Lalb_Chr14g0372011 Lupinus albus HOM05D003043 ORTHO05D003652 1.0e-54 217.2 197 56.3
Sabra01G0051400 Salix brachista HOM05D003043 ORTHO05D003652 1.0e-54 217.2 187 57.2
Gohir.A07G100300 Gossypium hirsutum HOM05D003043 ORTHO05D003652 2.9e-54 215.7 198 54.5
Gohir.D05G093900 Gossypium hirsutum HOM05D003043 ORTHO05D003652 2.9e-54 215.7 198 54.5
Gorai.009G096900 Gossypium raimondii HOM05D003043 ORTHO05D003652 3.8e-54 215.3 198 54.5
Sabra03G0114700 Salix brachista HOM05D003043 ORTHO05D003652 3.8e-54 215.3 187 56.7
Cpa.g.sc81.103 Carica papaya HOM05D003043 ORTHO05D003652 5.0e-54 214.9 197 54.3
A01p26080 Brassica napus HOM05D003043 ORTHO05D003652 6.5e-54 214.5 197 54.8
BraA01t02526Z Brassica rapa HOM05D003043 ORTHO05D003652 6.5e-54 214.5 197 54.8
Gohir.A05G093400 Gossypium hirsutum HOM05D003043 ORTHO05D003652 6.5e-54 214.5 198 54.0
ClCG03G001310 Citrullus lanatus HOM05D003043 ORTHO05D003652 8.4e-54 214.2 185 57.3
Potri.003G158100 Populus trichocarpa HOM05D003043 ORTHO05D003652 8.4e-54 214.2 187 56.7
Dinv42985 Davidia involucrata HOM05D003043 ORTHO05D003652 1.1e-53 213.8 187 54.5
Dinv43114 Davidia involucrata HOM05D003043 ORTHO05D003652 1.1e-53 213.8 187 54.5
Gohir.A13G226800 Gossypium hirsutum HOM05D003043 ORTHO05D003652 1.4e-53 213.4 198 54.0
Gohir.D13G232100 Gossypium hirsutum HOM05D003043 ORTHO05D003652 1.4e-53 213.4 198 54.0
Gorai.013G262900 Gossypium raimondii HOM05D003043 ORTHO05D003652 1.4e-53 213.4 198 54.0
THA.LOC104810757 Tarenaya hassleriana HOM05D003043 ORTHO05D003652 1.4e-53 213.4 197 53.8
BcaC01g01890 Brassica carinata HOM05D003043 ORTHO05D003652 2.5e-53 212.6 197 54.3
A06p20820 Brassica napus HOM05D003043 ORTHO05D003652 2.5e-53 212.6 197 54.3
C03p70910 Brassica napus HOM05D003043 ORTHO05D003652 2.5e-53 212.6 197 54.3
BolC3t19366H Brassica oleracea HOM05D003043 ORTHO05D003652 2.5e-53 212.6 197 54.3
BraA06t25157Z Brassica rapa HOM05D003043 ORTHO05D003652 2.5e-53 212.6 197 54.3
BcaC09g49767 Brassica carinata HOM05D003043 ORTHO05D003652 3.2e-53 212.2 197 54.3
C01p33160 Brassica napus HOM05D003043 ORTHO05D003652 3.2e-53 212.2 197 54.3
Haze_24151 Corylus avellana HOM05D003043 ORTHO05D003652 3.2e-53 212.2 197 54.8
Haze_24153 Corylus avellana HOM05D003043 ORTHO05D003652 3.2e-53 212.2 197 54.8
CSS0026296 Camellia sinensis var. sinensis HOM05D003043 ORTHO05D003652 4.2e-53 211.8 186 54.8
Gohir.D07G104400 Gossypium hirsutum HOM05D003043 ORTHO05D003652 4.2e-53 211.8 198 54.0
Gorai.001G112300 Gossypium raimondii HOM05D003043 ORTHO05D003652 4.2e-53 211.8 198 54.0
Nn2g11182 Nelumbo nucifera HOM05D003043 ORTHO05D003652 4.2e-53 211.8 187 55.1
Cfa011547 Carpinus fangiana HOM05D003043 ORTHO05D003652 5.5e-53 211.5 185 56.2
Psat7g209800 Pisum sativum HOM05D003043 ORTHO05D003652 5.5e-53 211.5 197 55.8
Thecc.09G316500 Theobroma cacao HOM05D003043 ORTHO05D003652 5.5e-53 211.5 198 54.0
Hma1.2p1_0615F.1_g189710 Hydrangea macrophylla HOM05D003043 ORTHO05D003652 7.1e-53 211.1 187 55.1
Sc12g0001270 Simmondsia chinensis HOM05D003043 ORTHO05D003652 7.1e-53 211.1 185 55.1
Aa31LG4G15670 Aethionema arabicum HOM05D003043 ORTHO05D003652 9.3e-53 210.7 197 53.8
AL5G25720 Arabidopsis lyrata HOM05D003043 ORTHO05D003652 9.3e-53 210.7 197 53.8
arahy.Tifrunner.gnm1.ann1.HN9X0L Arachis hypogaea HOM05D003043 ORTHO05D003652 9.3e-53 210.7 185 56.2
Thhalv10002403m.g Eutrema salsugineum HOM05D003043 ORTHO05D003652 9.3e-53 210.7 197 54.3
RcHm_v2.0_Chr7g0222311 Rosa chinensis HOM05D003043 ORTHO05D003652 9.3e-53 210.7 187 55.6
MD11G1095600 Malus domestica HOM05D003043 ORTHO05D003652 1.2e-52 210.3 187 55.1
Sp5g14980 Schrenkiella parvula HOM05D003043 ORTHO05D003652 1.2e-52 210.3 197 53.8
Solyc06g076360.4 Solanum lycopersicum HOM05D003043 ORTHO05D003652 1.2e-52 210.3 187 54.0
PGSC0003DMG400030420 Solanum tuberosum HOM05D003043 ORTHO05D003652 1.2e-52 210.3 187 54.0
AT3G46740 Arabidopsis thaliana HOM05D003043 ORTHO05D003652 2.1e-52 209.5 197 53.3
CAN.G394.74 Capsicum annuum HOM05D003043 ORTHO05D003652 2.1e-52 209.5 185 55.1
COL.COLO4_18570 Corchorus olitorius HOM05D003043 ORTHO05D003652 2.1e-52 209.5 198 53.5
MD03G1086500 Malus domestica HOM05D003043 ORTHO05D003652 2.1e-52 209.5 187 55.1
THA.LOC104799432 Tarenaya hassleriana HOM05D003043 ORTHO05D003652 2.1e-52 209.5 197 53.3
BcaB02g10711 Brassica carinata HOM05D003043 ORTHO05D003652 2.7e-52 209.1 198 54.0
FvH4_5g29410 Fragaria vesca HOM05D003043 ORTHO05D003652 2.7e-52 209.1 185 55.7
FAN04G2806 Fragaria x ananassa HOM05D003043 ORTHO05D003652 2.7e-52 209.1 185 55.7
FAN18G0944 Fragaria x ananassa HOM05D003043 ORTHO05D003652 2.7e-52 209.1 185 55.7
Sopen06g032770 Solanum pennellii HOM05D003043 ORTHO05D003652 2.7e-52 209.1 187 53.5
BcaB01g00984 Brassica carinata HOM05D003043 ORTHO05D003652 3.5e-52 208.8 185 56.2
Carub.0008s1993 Capsella rubella HOM05D003043 ORTHO05D003652 4.6e-52 208.4 185 56.8
CARHR154930 Cardamine hirsuta HOM05D003043 ORTHO05D003652 4.6e-52 208.4 197 52.8
Prupe.6G071100 Prunus persica HOM05D003043 ORTHO05D003652 4.6e-52 208.4 187 56.1
PGR102G2695 Punica granatum HOM05D003043 ORTHO05D003652 4.6e-52 208.4 185 54.6
TAR636G1806 Trochodendron aralioides HOM05D003043 ORTHO05D003652 6.1e-52 208.0 187 53.5
Manes.01G169900 Manihot esculenta HOM05D003043 ORTHO05D003652 1.0e-51 207.2 197 54.3
QL01p030425 Quercus lobata HOM05D003043 ORTHO05D003652 1.0e-51 207.2 197 52.8
Sed0022880 Sechium edule HOM05D003043 ORTHO05D003652 1.0e-51 207.2 185 56.8
FAN13G2534 Fragaria x ananassa HOM05D003043 ORTHO05D003652 1.3e-51 206.8 185 55.1
TAR623G1400 Trochodendron aralioides HOM05D003043 ORTHO05D003652 1.3e-51 206.8 187 52.9
MELO3C020610.2 Cucumis melo HOM05D003043 ORTHO05D003652 1.8e-51 206.5 184 56.5
CANSAT54G1677 Cannabis sativa HOM05D003043 ORTHO05D003652 2.3e-51 206.1 185 55.1
Ah.15g098580 Amaranthus hybridus HOM05D003043 ORTHO05D003652 3.0e-51 205.7 186 54.8
Duzib170G0098 Durio zibethinus HOM05D003043 ORTHO05D003652 3.0e-51 205.7 198 52.0
Migut.D00882 Erythranthe guttata HOM05D003043 ORTHO05D003652 3.0e-51 205.7 185 55.1
Hund04925 Selenicereus undatus HOM05D003043 ORTHO05D003652 3.0e-51 205.7 187 53.5
MSTRG.21224 Avicennia marina HOM05D003043 ORTHO05D003652 3.9e-51 205.3 197 52.8
Oeu045617.1 Olea europaea HOM05D003043 ORTHO05D003652 3.9e-51 205.3 185 53.5
Peaxi162Scf00481g00322 Petunia axillaris HOM05D003043 ORTHO05D003652 3.9e-51 205.3 185 54.1
Ca_20619_v3 Cicer arietinum L. HOM05D003043 ORTHO05D003652 5.1e-51 204.9 197 54.3
FAN08G1552 Fragaria x ananassa HOM05D003043 ORTHO05D003652 5.1e-51 204.9 185 54.6
Nitab4.5_0006916g0010 Nicotiana tabacum HOM05D003043 ORTHO05D003652 6.7e-51 204.5 187 52.4
SalBow1G3349 Salvia bowleyana HOM05D003043 ORTHO05D003652 6.7e-51 204.5 198 52.0
SalBow6G3018 Salvia bowleyana HOM05D003043 ORTHO05D003652 6.7e-51 204.5 198 52.0
arahy.Tifrunner.gnm1.ann1.119CG3 Arachis hypogaea HOM05D003043 ORTHO05D003652 1.1e-50 203.8 187 54.5
CsaV3_1G034510 Cucumis sativus L. HOM05D003043 ORTHO05D003652 1.1e-50 203.8 184 54.9
CiPaw.14G065900 Carya illinoinensis HOM05D003043 ORTHO05D003652 1.5e-50 203.4 187 52.4
SHI02287 Sapria himalayana HOM05D003043 ORTHO05D003652 1.9e-50 203.0 197 53.8
Cc01_g13290 Coffea canephora HOM05D003043 ORTHO05D003652 2.5e-50 202.6 188 54.3
PSO063G2647 Papaver somniferum HOM05D003043 ORTHO05D003652 2.5e-50 202.6 198 51.5
PSO339G4558 Papaver somniferum HOM05D003043 ORTHO05D003652 2.5e-50 202.6 198 51.5
AL8G35700 Arabidopsis lyrata HOM05D003043 ORTHO05D003652 7.4e-50 201.1 185 54.6
AUR62001746 Chenopodium quinoa HOM05D003043 ORTHO05D003652 3.7e-49 198.7 195 51.3
TWI75G1391 Tripterygium wilfordii HOM05D003043 ORTHO05D003652 8.2e-49 197.6 185 52.4
FvH4_3g28760 Fragaria vesca HOM05D003043 ORTHO05D003652 1.4e-48 196.8 195 51.8
Medtr4g064780 Medicago truncatula HOM05D003043 ORTHO05D003652 1.4e-48 196.8 197 51.8
RcHm_v2.0_Chr5g0052291 Rosa chinensis HOM05D003043 ORTHO05D003652 1.4e-48 196.8 186 51.1
Ah.08g219900 Amaranthus hybridus HOM05D003043 ORTHO05D003652 3.1e-48 195.7 186 51.1
MBI14_g08021_MAGBIO Magnolia biondii HOM05D003043 ORTHO05D003652 6.9e-48 194.5 185 49.7
ATR0559G340 Amborella trichopoda HOM05D003043 ORTHO05D003652 1.5e-47 193.4 185 51.4
CDE04G0292 Ceratophyllum demersum HOM05D003043 ORTHO05D003652 1.5e-47 193.4 184 52.2
TWI79G0647 Tripterygium wilfordii HOM05D003043 ORTHO05D003652 1.5e-47 193.4 185 51.9
FAN16G2241 Fragaria x ananassa HOM05D003043 ORTHO05D003652 2.6e-47 192.6 186 51.1
FAN21G2726 Fragaria x ananassa HOM05D003043 ORTHO05D003652 3.4e-47 192.2 184 51.6
HanXRQChr04g0109241 Helianthus annuus HOM05D003043 ORTHO05D003652 4.5e-47 191.8 187 52.9
Ciclev10027835m.g Citrus clementina HOM05D003043 ORTHO05D003652 5.9e-47 191.4 187 49.2
HanXRQChr01g0010431 Helianthus annuus HOM05D003043 ORTHO05D003652 5.9e-47 191.4 187 51.9
unitig_747.g22046 Utricularia gibba HOM05D003043 ORTHO05D003652 7.7e-47 191.0 185 51.9
ECA248G3037 Erigeron canadensis HOM05D003043 ORTHO05D003652 1.3e-46 190.3 185 54.1
TPR.G23580 Trifolium pratense HOM05D003043 ORTHO05D003652 1.3e-46 190.3 197 48.2
Atru.chr3.3955 Acer truncatum HOM05D003043 ORTHO05D003652 2.2e-46 189.5 187 50.3
Actinidia33774 Actinidia chinensis HOM05D003043 ORTHO05D003652 2.9e-46 189.1 187 50.8
Actinidia26677 Actinidia chinensis HOM05D003043 ORTHO05D003652 5.0e-46 188.3 187 51.3
FAN11G2976 Fragaria x ananassa HOM05D003043 ORTHO05D003652 5.0e-46 188.3 171 53.2
EL10Ac7g16059 Beta vulgaris HOM05D003043 ORTHO05D003652 6.5e-46 188.0 186 48.9
Aqoxy2G02292 Aquilegia oxysepala HOM05D003043 ORTHO05D003652 8.5e-46 187.6 187 49.7
SGA_v2.0_scaffold69G23225 Striga asiatica HOM05D003043 ORTHO05D003652 3.2e-45 185.7 185 50.8
Rhsim13G0077600 Rhododendron simsii HOM05D003043 ORTHO05D003652 4.2e-45 185.3 186 47.8
PSO339G0816 Papaver somniferum HOM05D003043 ORTHO05D003652 9.4e-45 184.1 185 48.1
A10p16480 Brassica napus HOM05D003043 ORTHO05D003652 1.6e-44 183.3 191 50.8
BraA10t43731Z Brassica rapa HOM05D003043 ORTHO05D003652 1.6e-44 183.3 191 50.3
DCAR_005948 Daucus carota HOM05D003043 ORTHO05D003652 2.1e-44 183.0 186 47.8
PSO513G0035 Papaver somniferum HOM05D003043 ORTHO05D003652 2.1e-44 183.0 185 47.0
C09p51560 Brassica napus HOM05D003043 ORTHO05D003652 3.6e-44 182.2 191 50.3
BcaC04g19797 Brassica carinata HOM05D003043 ORTHO05D003652 6.1e-44 181.4 191 50.3
vmacro03033 Vaccinium macrocarpon HOM05D003043 ORTHO05D003652 7.9e-44 181.0 186 47.8
Lj2A1068G37 Lonicera japonica HOM05D003043 ORTHO05D003652 1.0e-43 180.6 189 50.8
BcaB08g36270 Brassica carinata HOM05D003043 ORTHO05D003652 1.8e-43 179.9 191 50.3
Lsat_1_v5_gn_5_169481 Lactuca sativa HOM05D003043 ORTHO05D003652 6.7e-43 177.9 185 52.4
HPP92_010725 Vanilla planifolia HOM05D003043 ORTHO05D003652 9.7e-42 174.1 186 49.5
Carub.0005s1300 Capsella rubella HOM05D003043 ORTHO05D003652 1.4e-40 170.2 155 52.9
Nitab4.5_0000463g0160 Nicotiana tabacum HOM05D003043 ORTHO05D003652 5.3e-40 168.3 155 51.0
SGA_v2.0_scaffold66G22395 Striga asiatica HOM05D003043 ORTHO05D003652 2.6e-39 166.0 184 46.2
Lj2C969T9 Lonicera japonica HOM05D003043 ORTHO05D003652 3.4e-39 165.6 189 47.1
Os03g0271200 Oryza sativa ssp. japonica HOM05D003043 ORTHO05D003652 1.9e-37 159.8 191 44.5
Zm00001eb012140 Zea mays HOM05D003043 ORTHO05D003652 1.6e-36 156.8 191 44.0
Zm00001eb397790 Zea mays HOM05D003043 ORTHO05D003652 1.6e-36 156.8 191 44.0
BcaB05g23534 Brassica carinata HOM05D003043 ORTHO05D003652 2.1e-36 156.4 142 52.1
Eucgr.B02312 Eucalyptus grandis HOM05D003043 ORTHO05D003652 7.9e-36 154.5 137 51.8
AUR62020025 Chenopodium quinoa HOM05D003043 ORTHO05D003652 3.3e-34 149.1 136 52.2
AagrBONN_evm.TU.Sc2ySwM_362.1395 Anthoceros agrestis HOM05D003043 ORTHO05D003652 9.7e-34 147.5 186 38.7
DCAR_007432 Daucus carota HOM05D003043 ORTHO05D003652 2.8e-33 146.0 169 44.4
Mapoly0040s0008 Marchantia polymorpha HOM05D003043 ORTHO05D003652 1.4e-32 143.7 187 38.0
Actinidia08540 Actinidia chinensis HOM05D003043 ORTHO05D003652 1.8e-32 143.3 186 43.0
Migut.C00447 Erythranthe guttata HOM05D003043 ORTHO05D003652 9.1e-32 141.0 196 38.8
Pp3c5_23090 Physcomitrium patens HOM05D003043 ORTHO05D003652 9.1e-32 141.0 187 37.4
Pp3c6_10010 Physcomitrium patens HOM05D003043 ORTHO05D003652 9.1e-32 141.0 187 38.5
TPR.G40589 Trifolium pratense HOM05D003043 ORTHO05D003652 1.2e-31 140.6 90 78.9
Migut.J01162 Erythranthe guttata HOM05D003043 ORTHO05D003652 4.5e-31 138.7 196 38.3
Pp3c7_23430 Physcomitrium patens HOM05D003043 ORTHO05D003652 5.0e-30 135.2 186 35.5
ECA247G2855 Erigeron canadensis HOM05D003043 ORTHO05D003652 3.9e-27 125.6 169 43.8
SMO184G0008 Selaginella moellendorffii HOM05D003043 ORTHO05D003652 6.7e-27 124.8 170 38.8
CDE06G2097 Ceratophyllum demersum HOM05D003043 ORTHO05D003652 1.6e-23 113.6 110 50.0
Oeu053870.2 Olea europaea HOM05D003043 ORTHO05D003652 1.6e-23 113.6 177 36.7
BolC9t54008H Brassica oleracea HOM05D003043 ORTHO05D031725 4.4e-18 95.5 136 43.4
Oeu053885.1 Olea europaea HOM05D003043 ORTHO05D003652 5.5e-13 78.6 100 42.0
GSVIVG01024913001 Vitis vinifera HOM05D003043 ORTHO05D003652 9.4e-13 77.8 126 37.3
SMO340G0290 Selaginella moellendorffii HOM05D003043 ORTHO05D003652 2.7e-12 76.3 103 39.8
ATR0559G031 Amborella trichopoda HOM05D003043 ORTHO05D062579 1.5e-10 70.5 92 40.2
Peaxi162Scf00649g00054 Petunia axillaris HOM05D003043 ORTHO05D036527 1.7e-09 67.0 81 44.4
Os12g0115950 Oryza sativa ssp. japonica HOM05D003043 ORTHO05D003652 3.1e-08 62.8 89 38.2
Oeu023933.1 Olea europaea HOM05D003043 ORTHO05D003652 1.2e-07 60.8 102 33.3
CiPaw.13G090000 Carya illinoinensis HOM05D003043 ORTHO05D003652 2.0e-07 60.1 45 57.8
BcaC04g23202 Brassica carinata HOM05D003043 ORTHO05D031725 4.5e-07 58.9 84 42.9
C09p11190 Brassica napus HOM05D003043 ORTHO05D031725 4.5e-07 58.9 119 33.6
Os11g0116500 Oryza sativa ssp. japonica HOM05D003043 ORTHO05D003652 1.3e-06 57.4 89 32.6


User provided reference genes

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