Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39917 Trifolium pratense HOM05D000846 ORTHO05D006755 1.1e-99 366.7 187 100.0
Medtr2g006750 Medicago truncatula HOM05D000846 ORTHO05D006755 3.1e-91 338.6 185 93.0
Ca_00067_v3 Cicer arietinum L. HOM05D000846 ORTHO05D006755 7.6e-90 334.0 185 91.4
Lalb_Chr20g0123491 Lupinus albus HOM05D000846 ORTHO05D006755 1.3e-86 323.2 185 87.6
arahy.Tifrunner.gnm1.ann1.VK9VX5 Arachis hypogaea HOM05D000846 ORTHO05D006755 3.9e-86 321.6 185 87.6
Glyma.15G046000 Glycine max HOM05D000846 ORTHO05D006755 5.1e-86 321.2 185 87.0
Lj6g0026631 Lotus japonicus HOM05D000846 ORTHO05D006755 6.7e-86 320.9 185 85.9
VMungo0540G0381 Vigna mungo HOM05D000846 ORTHO05D006755 8.7e-86 320.5 185 86.5
Phvul.006G215200 Phaseolus vulgaris HOM05D000846 ORTHO05D006755 3.3e-85 318.5 185 85.4
Glyma.08G187000 Glycine max HOM05D000846 ORTHO05D006755 4.3e-85 318.2 185 86.5
Atru.chr11.1221 Acer truncatum HOM05D000846 ORTHO05D006755 4.1e-83 311.6 185 83.2
Psat1g221240 Pisum sativum HOM05D000846 ORTHO05D006755 4.1e-83 311.6 185 84.3
Manes.03G080600 Manihot esculenta HOM05D000846 ORTHO05D006755 7.7e-82 307.4 181 84.0
GSVIVG01022879001 Vitis vinifera HOM05D000846 ORTHO05D006755 1.0e-81 307.0 184 82.6
MD08G1234100 Malus domestica HOM05D000846 ORTHO05D006755 1.3e-81 306.6 185 82.2
CiPaw.06G146600 Carya illinoinensis HOM05D000846 ORTHO05D006755 1.7e-81 306.2 185 82.7
CANSAT25G3612 Cannabis sativa HOM05D000846 ORTHO05D006755 8.5e-81 303.9 185 82.2
Dinv19375 Davidia involucrata HOM05D000846 ORTHO05D006755 1.4e-80 303.1 184 82.6
Nn1g08833 Nelumbo nucifera HOM05D000846 ORTHO05D006755 2.5e-80 302.4 184 80.4
TAR381G0552 Trochodendron aralioides HOM05D000846 ORTHO05D006755 4.2e-80 301.6 185 81.6
QL02p099167 Quercus lobata HOM05D000846 ORTHO05D006755 7.2e-80 300.8 186 82.3
Thecc.02G295900 Theobroma cacao HOM05D000846 ORTHO05D006755 9.4e-80 300.4 185 82.2
Duzib251G0663 Durio zibethinus HOM05D000846 ORTHO05D006755 2.7e-79 298.9 180 82.8
MD15G1425400 Malus domestica HOM05D000846 ORTHO05D006755 3.6e-79 298.5 180 81.1
Potri.010G169800 Populus trichocarpa HOM05D000846 ORTHO05D006755 3.6e-79 298.5 185 79.5
COL.COLO4_27512 Corchorus olitorius HOM05D000846 ORTHO05D006755 4.6e-79 298.1 180 81.7
Cpa.g.sc39.48 Carica papaya HOM05D000846 ORTHO05D006755 6.1e-79 297.7 187 80.7
Aqoxy6G00235 Aquilegia oxysepala HOM05D000846 ORTHO05D006755 7.9e-79 297.4 184 81.5
Sc07g0004850 Simmondsia chinensis HOM05D000846 ORTHO05D006755 1.8e-78 296.2 184 79.3
Potri.008G085800 Populus trichocarpa HOM05D000846 ORTHO05D006755 2.3e-78 295.8 185 79.5
CSS0000492 Camellia sinensis var. sinensis HOM05D000846 ORTHO05D006755 3.9e-78 295.0 180 80.6
Sabra10G0129600 Salix brachista HOM05D000846 ORTHO05D006755 3.9e-78 295.0 185 80.0
CsaV3_3G019110 Cucumis sativus L. HOM05D000846 ORTHO05D006755 5.1e-78 294.7 181 79.6
Nitab4.5_0010336g0020 Nicotiana tabacum HOM05D000846 ORTHO05D006755 8.8e-78 293.9 184 79.3
Eucgr.I02730 Eucalyptus grandis HOM05D000846 ORTHO05D006755 1.1e-77 293.5 187 77.5
Rhsim05G0119700 Rhododendron simsii HOM05D000846 ORTHO05D006755 1.1e-77 293.5 184 80.4
ClCG05G009620 Citrullus lanatus HOM05D000846 ORTHO05D006755 1.5e-77 293.1 181 79.0
PGSC0003DMG400023766 Solanum tuberosum HOM05D000846 ORTHO05D006755 1.5e-77 293.1 184 78.8
Ciclev10030583m.g Citrus clementina HOM05D000846 ORTHO05D006755 2.0e-77 292.7 185 78.9
MELO3C019464.2 Cucumis melo HOM05D000846 ORTHO05D006755 2.0e-77 292.7 181 79.0
PSO528G0036 Papaver somniferum HOM05D000846 ORTHO05D006755 2.0e-77 292.7 184 77.2
Solyc01g104070.3 Solanum lycopersicum HOM05D000846 ORTHO05D006755 3.3e-77 292.0 184 78.3
Sopen01g046480 Solanum pennellii HOM05D000846 ORTHO05D006755 3.3e-77 292.0 184 78.3
Cfa005511 Carpinus fangiana HOM05D000846 ORTHO05D006755 4.3e-77 291.6 185 78.4
CAN.G798.7 Capsicum annuum HOM05D000846 ORTHO05D006755 7.4e-77 290.8 184 78.3
Nitab4.5_0000816g0070 Nicotiana tabacum HOM05D000846 ORTHO05D006755 7.4e-77 290.8 184 78.8
AUR62026527 Chenopodium quinoa HOM05D000846 ORTHO05D006755 1.3e-76 290.0 180 78.3
PSO170G2918 Papaver somniferum HOM05D000846 ORTHO05D006755 1.3e-76 290.0 184 77.7
Gorai.009G329500 Gossypium raimondii HOM05D000846 ORTHO05D006755 1.7e-76 289.7 180 80.0
PGR142G3343 Punica granatum HOM05D000846 ORTHO05D006755 2.2e-76 289.3 185 77.3
Gohir.A05G308500 Gossypium hirsutum HOM05D000846 ORTHO05D006755 2.8e-76 288.9 179 79.9
Peaxi162Scf00017g02641 Petunia axillaris HOM05D000846 ORTHO05D006755 2.8e-76 288.9 184 77.7
RcHm_v2.0_Chr7g0221821 Rosa chinensis HOM05D000846 ORTHO05D006755 2.8e-76 288.9 184 76.6
Lsat_1_v5_gn_9_118641 Lactuca sativa HOM05D000846 ORTHO05D006755 4.8e-76 288.1 180 75.0
Peaxi162Scf00011g00530 Petunia axillaris HOM05D000846 ORTHO05D006755 4.8e-76 288.1 184 77.7
Haze_01712 Corylus avellana HOM05D000846 ORTHO05D006755 8.2e-76 287.3 185 78.4
Gohir.D05G309200 Gossypium hirsutum HOM05D000846 ORTHO05D006755 8.2e-76 287.3 180 79.4
AUR62026329 Chenopodium quinoa HOM05D000846 ORTHO05D006755 1.1e-75 287.0 184 76.6
Sed0025663 Sechium edule HOM05D000846 ORTHO05D006755 1.8e-75 286.2 185 76.8
vmacro19885 Vaccinium macrocarpon HOM05D000846 ORTHO05D006755 2.4e-75 285.8 184 77.7
EL10Ac6g13093 Beta vulgaris HOM05D000846 ORTHO05D006755 3.1e-75 285.4 184 76.1
Cc02_g22620 Coffea canephora HOM05D000846 ORTHO05D006755 3.1e-75 285.4 180 77.8
FvH4_5g29150 Fragaria vesca HOM05D000846 ORTHO05D006755 2.0e-74 282.7 184 75.0
Oeu008902.1 Olea europaea HOM05D000846 ORTHO05D006755 2.0e-74 282.7 184 75.0
Oeu008904.1 Olea europaea HOM05D000846 ORTHO05D006755 2.0e-74 282.7 184 75.0
FAN08G3691 Fragaria x ananassa HOM05D000846 ORTHO05D006755 2.6e-74 282.3 184 75.0
FAN04G0084 Fragaria x ananassa HOM05D000846 ORTHO05D006755 3.4e-74 282.0 184 74.5
HanXRQChr03g0073611 Helianthus annuus HOM05D000846 ORTHO05D006755 3.4e-74 282.0 184 73.4
FAN13G1889 Fragaria x ananassa HOM05D000846 ORTHO05D006755 4.5e-74 281.6 180 75.6
DCAR_001823 Daucus carota HOM05D000846 ORTHO05D006755 5.9e-74 281.2 184 76.1
ECA240G4115 Erigeron canadensis HOM05D000846 ORTHO05D006755 5.9e-74 281.2 184 73.4
FAN18G2713 Fragaria x ananassa HOM05D000846 ORTHO05D006755 5.9e-74 281.2 184 75.0
Ah.03g132090 Amaranthus hybridus HOM05D000846 ORTHO05D006755 3.8e-73 278.5 186 74.7
unitig_21.g20912 Utricularia gibba HOM05D000846 ORTHO05D006755 5.0e-73 278.1 178 77.0
Os03g0261900 Oryza sativa ssp. japonica HOM05D000846 ORTHO05D006755 1.6e-71 273.1 181 72.4
MBI01_g09375_MAGBIO Magnolia biondii HOM05D000846 ORTHO05D006755 2.1e-71 272.7 184 75.0
MSTRG.16514 Avicennia marina HOM05D000846 ORTHO05D006755 1.0e-70 270.4 184 73.9
THA.LOC104805711 Tarenaya hassleriana HOM05D000846 ORTHO05D006755 1.8e-70 269.6 182 71.4
Migut.B00826 Erythranthe guttata HOM05D000846 ORTHO05D006755 2.3e-70 269.2 184 72.3
SGA_v2.0_scaffold110G31332 Striga asiatica HOM05D000846 ORTHO05D006755 5.1e-70 268.1 184 72.8
AL7G25080 Arabidopsis lyrata HOM05D000846 ORTHO05D006755 2.0e-69 266.2 185 70.3
AT4G27640 Arabidopsis thaliana HOM05D000846 ORTHO05D006755 2.0e-69 266.2 185 69.7
Carub.0007s1321 Capsella rubella HOM05D000846 ORTHO05D006755 5.7e-69 264.6 185 69.2
HPP92_009356 Vanilla planifolia HOM05D000846 ORTHO05D006755 9.7e-69 263.8 182 68.7
Sp7g25600 Schrenkiella parvula HOM05D000846 ORTHO05D006755 3.7e-68 261.9 185 67.6
A01p18930 Brassica napus HOM05D000846 ORTHO05D006755 2.4e-67 259.2 182 67.6
BolC7t46041H Brassica oleracea HOM05D000846 ORTHO05D006755 2.4e-67 259.2 182 66.5
BraA01t01834Z Brassica rapa HOM05D000846 ORTHO05D006755 2.4e-67 259.2 182 67.6
A03p57390 Brassica napus HOM05D000846 ORTHO05D006755 3.1e-67 258.8 182 66.5
BraA03t14805Z Brassica rapa HOM05D000846 ORTHO05D006755 3.1e-67 258.8 182 66.5
BcaNung01650 Brassica carinata HOM05D000846 ORTHO05D006755 4.1e-67 258.5 185 66.5
BcaC06g32677 Brassica carinata HOM05D000846 ORTHO05D006755 5.3e-67 258.1 182 66.5
C07p55610 Brassica napus HOM05D000846 ORTHO05D006755 7.0e-67 257.7 182 65.9
C01p23880 Brassica napus HOM05D000846 ORTHO05D006755 2.0e-66 256.1 182 67.0
BolC1t02333H Brassica oleracea HOM05D000846 ORTHO05D006755 2.0e-66 256.1 182 67.0
SEGI_41093 Sequoiadendron giganteum HOM05D000846 ORTHO05D006755 4.5e-66 255.0 178 68.5
BcaC09g50565 Brassica carinata HOM05D000846 ORTHO05D006755 7.7e-66 254.2 182 66.5
ATR0665G276 Amborella trichopoda HOM05D000846 ORTHO05D006755 1.3e-65 253.4 185 67.0
Thhalv10024293m.g Eutrema salsugineum HOM05D000846 ORTHO05D006755 2.2e-65 252.7 185 64.9
Aa31LG9G17870 Aethionema arabicum HOM05D000846 ORTHO05D006755 7.2e-64 247.7 195 63.1
Nn5g28327 Nelumbo nucifera HOM05D000846 ORTHO05D006755 5.2e-62 241.5 188 67.6
MD08G1233700 Malus domestica HOM05D000846 ORTHO05D006755 6.7e-62 241.1 147 82.3
HanXRQChr16g0511911 Helianthus annuus HOM05D000846 ORTHO05D006755 4.4e-61 238.4 184 64.7
Prupe.1G571100 Prunus persica HOM05D000846 ORTHO05D006755 1.7e-60 236.5 185 67.0
Sabra08G0063600 Salix brachista HOM05D000846 ORTHO05D006755 8.2e-60 234.2 148 78.4
Hund15507 Selenicereus undatus HOM05D000846 ORTHO05D006755 7.0e-59 231.1 141 79.4
Lsat_1_v5_gn_7_78561 Lactuca sativa HOM05D000846 ORTHO05D006755 4.2e-56 221.9 178 60.7
EL10Ac9g22362 Beta vulgaris HOM05D000846 ORTHO05D006755 1.2e-53 213.8 162 67.9
AagrBONN_evm.TU.Sc2ySwM_228.251 Anthoceros agrestis HOM05D000846 ORTHO05D006755 1.3e-52 210.3 182 58.8
SMO364G0838 Selaginella moellendorffii HOM05D000846 ORTHO05D006755 7.0e-51 204.5 180 57.2
Pp3c4_7610 Physcomitrium patens HOM05D000846 ORTHO05D006755 1.7e-49 199.9 176 55.7
Mapoly0029s0100 Marchantia polymorpha HOM05D000846 ORTHO05D006755 7.2e-48 194.5 178 57.3
Cfa005509 Carpinus fangiana HOM05D002649 ORTHO05D002838 1.6e-47 193.4 144 71.5
CBR_g3136 Chara braunii HOM05D000846 ORTHO05D006755 2.6e-45 186.0 179 51.4
ECA236G1359 Erigeron canadensis HOM05D000846 ORTHO05D006755 1.9e-40 169.9 126 65.9
Nitab4.5_0000176g0040 Nicotiana tabacum HOM05D000846 ORTHO05D006755 1.7e-25 120.2 212 40.6
Cre12.g490850 Chlamydomonas reinhardtii HOM05D000846 ORTHO05D006755 1.1e-19 100.9 196 35.7
Actinidia39034 Actinidia chinensis HOM05D000846 ORTHO05D006755 2.8e-15 86.3 55 76.4
PRCOL_00005470 Prasinoderma coloniale HOM05D000846 ORTHO05D006755 2.0e-13 80.1 167 31.7
Actinidia30531 Actinidia chinensis HOM05D006894 ORTHO05D008724 1.1e-08 64.3 42 71.4
SHI37023 Sapria himalayana HOM05D000846 ORTHO05D006755 1.5e-08 63.9 49 65.3
Lsat_1_v5_gn_2_58401 Lactuca sativa HOM05D000846 ORTHO05D001340 3.6e-07 59.3 194 27.3
HPP92_006106 Vanilla planifolia HOM05D000846 ORTHO05D001340 4.7e-07 58.9 150 27.3
Zm00001eb325270 Zea mays HOM05D000846 ORTHO05D001340 2.4e-06 56.6 153 28.1
Os07g0575100 Oryza sativa ssp. japonica HOM05D000846 ORTHO05D001340 4.0e-06 55.8 154 27.9
HanXRQChr14g0438121 Helianthus annuus HOM05D000846 ORTHO05D001340 5.2e-06 55.5 193 25.4
Nitab4.5_0000551g0220 Nicotiana tabacum HOM05D000846 ORTHO05D001340 8.9e-06 54.7 183 28.4


User provided reference genes

Program Settings