Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39880 Trifolium pratense HOM05D001158 ORTHO05D000964 1.5e-74 282.7 136 100.0
Medtr8g030870 Medicago truncatula HOM05D001158 ORTHO05D000964 6.6e-59 230.7 136 81.6
Lj3g0027208 Lotus japonicus HOM05D001158 ORTHO05D000964 3.1e-48 195.3 139 71.2
Glyma.03G009400 Glycine max HOM05D001158 ORTHO05D000964 2.0e-47 192.6 135 70.4
Lalb_Chr17g0339651 Lupinus albus HOM05D001158 ORTHO05D000964 3.7e-41 171.8 136 67.6
arahy.Tifrunner.gnm1.ann1.GZWF51 Arachis hypogaea HOM05D001158 ORTHO05D000964 7.1e-37 157.5 131 64.9
arahy.Tifrunner.gnm1.ann1.LFR1QN Arachis hypogaea HOM05D001158 ORTHO05D000964 7.9e-36 154.1 131 64.1
Dinv32481 Davidia involucrata HOM05D000001 ORTHO05D011176 1.5e-34 149.8 141 56.7
QL08p048848 Quercus lobata HOM05D001158 ORTHO05D000964 7.4e-34 147.5 133 55.6
TAR375G1126 Trochodendron aralioides HOM05D001158 ORTHO05D000964 1.6e-33 146.4 138 55.8
Prupe.2G170300 Prunus persica HOM05D001158 ORTHO05D000964 1.1e-32 143.7 140 56.4
RcHm_v2.0_Chr1g0355241 Rosa chinensis HOM05D001158 ORTHO05D000964 3.1e-32 142.1 134 53.7
FAN03G2416 Fragaria x ananassa HOM05D001158 ORTHO05D000964 6.9e-32 141.0 135 54.1
Duzib133G0578 Durio zibethinus HOM05D001158 ORTHO05D000964 9.0e-32 140.6 136 54.4
FvH4_7g14250 Fragaria vesca HOM05D001158 ORTHO05D000964 7.6e-31 137.5 135 52.6
FAN06G0707 Fragaria x ananassa HOM05D001158 ORTHO05D000964 2.9e-30 135.6 135 51.9
Thecc.01G359300 Theobroma cacao HOM05D001158 ORTHO05D000964 2.9e-30 135.6 136 52.2
Gohir.A12G109100 Gossypium hirsutum HOM05D001158 ORTHO05D000964 8.4e-30 134.0 139 53.2
FAN10G0224 Fragaria x ananassa HOM05D001158 ORTHO05D000964 1.4e-29 133.3 121 56.2
Atru.chr5.492 Acer truncatum HOM05D001158 ORTHO05D000964 2.5e-29 132.5 136 51.5
vmacro13288 Vaccinium macrocarpon HOM05D001158 ORTHO05D000964 2.5e-29 132.5 137 48.2
FAN06G3042 Fragaria x ananassa HOM05D001158 ORTHO05D000964 3.2e-29 132.1 123 55.3
CANSAT56G0931 Cannabis sativa HOM05D001158 ORTHO05D000964 1.2e-28 130.2 128 53.1
Gohir.D12G112100 Gossypium hirsutum HOM05D001158 ORTHO05D000964 3.5e-28 128.6 139 52.5
Sabra14G0061100 Salix brachista HOM05D001158 ORTHO05D000964 3.5e-28 128.6 134 50.7
Phvul.010G098601 Phaseolus vulgaris HOM05D001158 ORTHO05D000964 2.3e-27 125.9 106 59.4
Rhsim07G0015300 Rhododendron simsii HOM05D001158 ORTHO05D000964 6.7e-27 124.4 137 49.6
TWI59G0723 Tripterygium wilfordii HOM05D001158 ORTHO05D000964 1.1e-26 123.6 139 48.2
PGR031G0433 Punica granatum HOM05D001158 ORTHO05D000964 1.5e-26 123.2 136 47.8
Actinidia10012 Actinidia chinensis HOM05D001158 ORTHO05D000964 5.7e-26 121.3 137 47.4
Ciclev10024048m.g Citrus clementina HOM05D001158 ORTHO05D000964 1.3e-25 120.2 143 46.2
Manes.05G034500 Manihot esculenta HOM05D001158 ORTHO05D000964 6.3e-25 117.9 141 46.8
SHI13444 Sapria himalayana HOM05D001158 ORTHO05D000964 6.3e-25 117.9 119 51.3
Peaxi162Scf00008g02130 Petunia axillaris HOM05D001158 ORTHO05D000964 1.8e-24 116.3 143 44.1
MD01G1060400 Malus domestica HOM05D001158 ORTHO05D000964 3.1e-24 115.5 89 62.9
Aqoxy7G00312 Aquilegia oxysepala HOM05D001158 ORTHO05D000964 4.1e-24 115.2 139 45.3
Gorai.008G121500 Gossypium raimondii HOM05D001158 ORTHO05D000964 2.2e-22 109.4 83 65.1
HanXRQChr06g0170051 Helianthus annuus HOM05D001158 ORTHO05D000964 6.5e-22 107.8 142 45.1
AT4G00467 Arabidopsis thaliana HOM05D001158 ORTHO05D000964 8.5e-22 107.5 106 50.0
BcaC04g24167 Brassica carinata HOM05D001604 ORTHO05D001432 8.5e-22 107.5 128 43.0
BcaB01g02254 Brassica carinata HOM05D001604 ORTHO05D001432 1.1e-21 107.1 94 53.2
A09p00450 Brassica napus HOM05D001604 ORTHO05D001432 1.4e-21 106.7 100 50.0
C09p00410 Brassica napus HOM05D001604 ORTHO05D001432 1.4e-21 106.7 94 52.1
BolC9t52976H Brassica oleracea HOM05D001158 ORTHO05D000964 1.4e-21 106.7 94 52.1
BraA09t35715Z Brassica rapa HOM05D001604 ORTHO05D001432 1.4e-21 106.7 94 52.1
CiPaw.02G030600 Carya illinoinensis HOM05D001158 ORTHO05D000964 1.4e-21 106.7 98 55.1
AL6G52990 Arabidopsis lyrata HOM05D001604 ORTHO05D001432 1.9e-21 106.3 135 43.7
Sed0011042 Sechium edule HOM05D001158 ORTHO05D000964 2.5e-21 105.9 126 44.4
Sc26g0000920 Simmondsia chinensis HOM05D001158 ORTHO05D000964 2.5e-21 105.9 125 44.8
ClCG05G001540 Citrullus lanatus HOM05D001158 ORTHO05D000964 4.2e-21 105.1 138 41.3
Thhalv10029141m.g Eutrema salsugineum HOM05D001158 ORTHO05D000964 4.2e-21 105.1 94 53.2
Aa31LG5G510 Aethionema arabicum HOM05D001158 ORTHO05D000964 7.2e-21 104.4 140 40.7
THA.LOC104801440 Tarenaya hassleriana HOM05D001158 ORTHO05D000964 7.2e-21 104.4 128 46.9
MD07G1137300 Malus domestica HOM05D001158 ORTHO05D000964 1.2e-20 103.6 89 57.3
Nitab4.5_0007064g0020 Nicotiana tabacum HOM05D001158 ORTHO05D000964 1.6e-20 103.2 133 44.4
CARHR248570 Cardamine hirsuta HOM05D001158 ORTHO05D000964 2.7e-20 102.4 86 53.5
BcaB01g02162 Brassica carinata HOM05D001604 ORTHO05D001432 4.6e-20 101.7 110 46.4
AUR62022540 Chenopodium quinoa HOM05D001158 ORTHO05D000964 6.1e-20 101.3 123 44.7
AUR62022560 Chenopodium quinoa HOM05D001158 ORTHO05D000964 6.1e-20 101.3 123 44.7
CSS0029556 Camellia sinensis var. sinensis HOM05D001158 ORTHO05D000964 1.8e-19 99.8 86 57.0
Carub.0006s3679 Capsella rubella HOM05D001158 ORTHO05D000964 1.8e-19 99.8 83 55.4
CARHR000050 Cardamine hirsuta HOM05D001158 ORTHO05D000964 1.8e-19 99.8 83 55.4
Nitab4.5_0000386g0070 Nicotiana tabacum HOM05D001158 ORTHO05D000964 1.8e-19 99.8 134 44.0
Oeu060666.1 Olea europaea HOM05D001158 ORTHO05D000964 1.8e-19 99.8 84 58.3
AUR62004355 Chenopodium quinoa HOM05D001158 ORTHO05D000964 3.9e-19 98.6 125 42.4
A03p32170 Brassica napus HOM05D000346 ORTHO05D001432 1.1e-18 97.1 83 55.4
BraA03t12387Z Brassica rapa HOM05D000346 ORTHO05D001432 1.1e-18 97.1 83 55.4
CsaV3_3G008920 Cucumis sativus L. HOM05D001158 ORTHO05D000964 1.1e-18 97.1 140 42.1
Sp6g00510 Schrenkiella parvula HOM05D001158 ORTHO05D000964 1.1e-18 97.1 83 54.2
EL10Ac1g00419 Beta vulgaris HOM05D001158 ORTHO05D000964 1.9e-18 96.3 126 42.1
BcaC01g06877 Brassica carinata HOM05D001604 ORTHO05D001432 2.5e-18 95.9 83 54.2
C03p39200 Brassica napus HOM05D000346 ORTHO05D001432 2.5e-18 95.9 83 54.2
BolC3t16191H Brassica oleracea HOM05D000346 ORTHO05D000326 2.5e-18 95.9 83 54.2
Lsat_1_v5_gn_7_4640 Lactuca sativa HOM05D001158 ORTHO05D000964 7.4e-18 94.4 85 55.3
Solyc10g017480.1 Solanum lycopersicum HOM05D001158 ORTHO05D000964 7.4e-18 94.4 140 43.6
SGA_v2.0_scaffold4G02324 Striga asiatica HOM05D001158 ORTHO05D000964 7.4e-18 94.4 121 41.3
Oeu061931.1 Olea europaea HOM05D001158 ORTHO05D000964 1.7e-17 93.2 90 50.0
Migut.B01751 Erythranthe guttata HOM05D001158 ORTHO05D000964 2.8e-17 92.4 137 41.6
DCAR_025192 Daucus carota HOM05D001158 ORTHO05D000964 1.1e-16 90.5 83 51.8
Potri.014G084100 Populus trichocarpa HOM05D001158 ORTHO05D000964 1.8e-16 89.7 101 45.5
MELO3C006112.2 Cucumis melo HOM05D001158 ORTHO05D000964 5.3e-16 88.2 99 43.4
SalBow3G2992 Salvia bowleyana HOM05D001158 ORTHO05D000964 2.9e-14 82.4 143 35.0
unitig_0.g1265 Utricularia gibba HOM05D001158 ORTHO05D000964 5.0e-14 81.6 128 35.9
Ah.01g005370 Amaranthus hybridus HOM05D001452 ORTHO05D001388 8.5e-14 80.9 121 42.1
Duzib138G0797 Durio zibethinus HOM05D001158 ORTHO05D000964 7.2e-13 77.8 101 43.6
Cfa012766 Carpinus fangiana HOM05D001035 ORTHO05D001045 1.4e-11 73.6 51 62.7
Actinidia20905 Actinidia chinensis HOM05D000346 ORTHO05D000326 2.3e-11 72.8 85 42.4
HPP92_005037 Vanilla planifolia HOM05D001158 ORTHO05D000964 8.8e-11 70.9 90 43.3
TPR.G3507 Trifolium pratense HOM05D001158 ORTHO05D000964 6.3e-09 64.7 88 34.1
Glyma.02G247900 Glycine max HOM05D001158 ORTHO05D000964 8.2e-09 64.3 89 33.7
Ca_05893_v3 Cicer arietinum L. HOM05D001158 ORTHO05D000964 1.1e-08 63.9 88 34.1
MD07G1199800 Malus domestica HOM05D001158 ORTHO05D000964 1.4e-08 63.5 87 33.3
SEGI_00426 Sequoiadendron giganteum HOM05D001158 ORTHO05D000964 2.4e-08 62.8 87 41.4
Medtr5g079880 Medicago truncatula HOM05D001158 ORTHO05D000964 4.1e-08 62.0 88 31.8
SEGI_24227 Sequoiadendron giganteum HOM05D001158 ORTHO05D000964 4.1e-08 62.0 93 39.8
VMungo0647G2054 Vigna mungo HOM05D001158 ORTHO05D000964 4.1e-08 62.0 88 35.2
LjContig00141g0001022 Lotus japonicus HOM05D001158 ORTHO05D000964 5.3e-08 61.6 70 38.6
Phvul.008G232800 Phaseolus vulgaris HOM05D001158 ORTHO05D000964 5.3e-08 61.6 88 35.2
GSVIVG01026929001 Vitis vinifera HOM05D001158 ORTHO05D000964 5.3e-08 61.6 120 33.3
Lalb_Chr17g0346211 Lupinus albus HOM05D001158 ORTHO05D000964 7.0e-08 61.2 70 38.6
Cc06_g02580 Coffea canephora HOM05D001158 ORTHO05D000964 9.1e-08 60.8 87 36.8
Psat2g041360 Pisum sativum HOM05D001158 ORTHO05D000964 1.2e-07 60.5 86 32.6
Migut.F00781 Erythranthe guttata HOM05D001158 ORTHO05D000964 1.5e-07 60.1 86 33.7
MBI05_g28391_MAGBIO Magnolia biondii HOM05D001158 ORTHO05D000964 2.0e-07 59.7 89 36.0
Potri.010G203000 Populus trichocarpa HOM05D001158 ORTHO05D000964 2.0e-07 59.7 69 37.7
Hund16081 Selenicereus undatus HOM05D001158 ORTHO05D000964 2.0e-07 59.7 65 38.5
ATR0680G245 Amborella trichopoda HOM05D001158 ORTHO05D000964 2.6e-07 59.3 95 35.8
BcaB02g08418 Brassica carinata HOM05D001158 ORTHO05D000964 2.6e-07 59.3 66 39.4
PSO675G4373 Papaver somniferum HOM05D001158 ORTHO05D000964 2.6e-07 59.3 90 34.4
Atru.chr12.438 Acer truncatum HOM05D001158 ORTHO05D000964 3.4e-07 58.9 65 38.5
SEGI_24006 Sequoiadendron giganteum HOM05D001158 ORTHO05D000964 3.4e-07 58.9 89 36.0
Prupe.6G256400 Prunus persica HOM05D001158 ORTHO05D000964 4.5e-07 58.5 85 38.8
CDE02G4597 Ceratophyllum demersum HOM05D001158 ORTHO05D000964 5.9e-07 58.2 69 39.1
Oeu048240.1 Olea europaea HOM05D001158 ORTHO05D000964 5.9e-07 58.2 85 35.3
Oeu048243.1 Olea europaea HOM05D007042 ORTHO05D008441 5.9e-07 58.2 93 37.6
Hund16082 Selenicereus undatus HOM05D001158 ORTHO05D000964 5.9e-07 58.2 65 36.9
CANSAT56G0809 Cannabis sativa HOM05D001158 ORTHO05D000964 7.7e-07 57.8 68 32.4
CiPaw.01G288200 Carya illinoinensis HOM05D001158 ORTHO05D000964 7.7e-07 57.8 66 36.4
CDE09G0461 Ceratophyllum demersum HOM05D001158 ORTHO05D000964 7.7e-07 57.8 69 37.7
Lalb_Chr10g0097311 Lupinus albus HOM05D001158 ORTHO05D000964 7.7e-07 57.8 88 38.6
PSO541G2545 Papaver somniferum HOM05D001158 ORTHO05D000964 7.7e-07 57.8 90 33.3
Psat2g041560 Pisum sativum HOM05D001158 ORTHO05D000964 7.7e-07 57.8 81 35.8
Prupe.2G236500 Prunus persica HOM05D001158 ORTHO05D000964 7.7e-07 57.8 66 36.4
Sabra10G0156600 Salix brachista HOM05D000370 ORTHO05D001366 7.7e-07 57.8 63 39.7
Atru.chr12.435 Acer truncatum HOM05D000370 ORTHO05D001366 1.0e-06 57.4 87 32.2
BcaC02g09760 Brassica carinata HOM05D001158 ORTHO05D000964 1.0e-06 57.4 85 35.3
C04p36880 Brassica napus HOM05D001158 ORTHO05D000964 1.0e-06 57.4 85 35.3
Sabra15G0062800 Salix brachista HOM05D001158 ORTHO05D000964 1.0e-06 57.4 69 34.8
SEGI_17910 Sequoiadendron giganteum HOM05D001158 ORTHO05D000964 1.0e-06 57.4 89 36.0
SEGI_18496 Sequoiadendron giganteum HOM05D001158 ORTHO05D000964 1.0e-06 57.4 89 36.0
CDE09G0348 Ceratophyllum demersum HOM05D001158 ORTHO05D000964 1.3e-06 57.0 69 37.7
ClCG09G019700 Citrullus lanatus HOM05D001158 ORTHO05D000964 1.3e-06 57.0 67 34.3
Nn2g11124 Nelumbo nucifera HOM05D001158 ORTHO05D000964 1.3e-06 57.0 82 36.6
PSO675G8934 Papaver somniferum HOM05D001158 ORTHO05D000964 1.3e-06 57.0 63 38.1
Atru.chr12.437 Acer truncatum HOM05D001158 ORTHO05D000964 1.7e-06 56.6 65 38.5
Lj3g0001533 Lotus japonicus HOM05D001158 ORTHO05D000964 1.7e-06 56.6 39 66.7
MD01G1135100 Malus domestica HOM05D001158 ORTHO05D000964 1.7e-06 56.6 60 40.0
PSO541G4880 Papaver somniferum HOM05D001158 ORTHO05D000964 1.7e-06 56.6 90 34.4
Prupe.2G158700 Prunus persica HOM05D001158 ORTHO05D000964 1.7e-06 56.6 87 37.9
Prupe.2G158800 Prunus persica HOM05D001158 ORTHO05D000964 1.7e-06 56.6 87 37.9
SEGI_18461 Sequoiadendron giganteum HOM05D001158 ORTHO05D000964 1.7e-06 56.6 81 39.5
GSVIVG01016533001 Vitis vinifera HOM05D001158 ORTHO05D000964 1.7e-06 56.6 63 38.1
CiPaw.02G184700 Carya illinoinensis HOM05D001158 ORTHO05D000964 2.2e-06 56.2 66 36.4
CDE09G0857 Ceratophyllum demersum HOM05D001158 ORTHO05D000964 2.2e-06 56.2 82 34.1
Ciclev10032979m.g Citrus clementina HOM05D001158 ORTHO05D000964 2.2e-06 56.2 57 40.4
Dinv26024 Davidia involucrata HOM05D001158 ORTHO05D000964 2.2e-06 56.2 83 34.9
Nn2g13359 Nelumbo nucifera HOM05D001158 ORTHO05D000964 2.2e-06 56.2 87 35.6
Oeu048239.1 Olea europaea HOM05D001158 ORTHO05D000964 2.2e-06 56.2 85 34.1
PSO675G1703 Papaver somniferum HOM05D001158 ORTHO05D000964 2.2e-06 56.2 91 34.1
Peaxi162Scf00760g00325 Petunia axillaris HOM05D001158 ORTHO05D000964 2.9e-06 55.8 87 35.6
Sabra08G0041200 Salix brachista HOM05D001158 ORTHO05D000964 2.9e-06 55.8 83 31.3
A04p04460 Brassica napus HOM05D001158 ORTHO05D000964 3.8e-06 55.5 68 36.8
BraA04t16157Z Brassica rapa HOM05D001158 ORTHO05D000964 3.8e-06 55.5 68 36.8
RhsimUnG0042000 Rhododendron simsii HOM05D001158 ORTHO05D000964 3.8e-06 55.5 59 35.6
Sp5g07000 Schrenkiella parvula HOM05D001158 ORTHO05D000964 3.8e-06 55.5 66 36.4
BolC4t25254H Brassica oleracea HOM05D001158 ORTHO05D000964 5.0e-06 55.1 85 34.1
Glyma.11G219000 Glycine max HOM05D001158 ORTHO05D000964 5.0e-06 55.1 86 32.6
Oeu053462.1 Olea europaea HOM05D001158 ORTHO05D000964 5.0e-06 55.1 68 38.2
Solyc04g011540.4 Solanum lycopersicum HOM05D001158 ORTHO05D000964 5.0e-06 55.1 95 31.6
Cpa.g.sc1.415 Carica papaya HOM05D001158 ORTHO05D000964 6.5e-06 54.7 60 36.7
Lalb_Chr10g0104551 Lupinus albus HOM05D001158 ORTHO05D000964 6.5e-06 54.7 60 38.3
MD12G1142700 Malus domestica HOM05D001158 ORTHO05D000964 6.5e-06 54.7 85 36.5
PSO384G1915 Papaver somniferum HOM05D001158 ORTHO05D000964 6.5e-06 54.7 67 37.3
RcHm_v2.0_Chr1g0367731 Rosa chinensis HOM05D001158 ORTHO05D000964 6.5e-06 54.7 69 34.8
Thecc.10G040600 Theobroma cacao HOM05D001158 ORTHO05D000964 6.5e-06 54.7 70 35.7
unitig_0.g1230 Utricularia gibba HOM05D001158 ORTHO05D000964 6.5e-06 54.7 81 39.5
AUR62012096 Chenopodium quinoa HOM05D001158 ORTHO05D000964 8.5e-06 54.3 64 31.2
Haze_17075 Corylus avellana HOM05D001158 ORTHO05D000964 8.5e-06 54.3 68 35.3
Dinv03041 Davidia involucrata HOM05D001158 ORTHO05D000964 8.5e-06 54.3 80 33.8
PSO339G1358 Papaver somniferum HOM05D001158 ORTHO05D000964 8.5e-06 54.3 67 37.3
Sabra10G0156700 Salix brachista HOM05D001158 ORTHO05D000964 8.5e-06 54.3 66 36.4
PGSC0003DMG400027742 Solanum tuberosum HOM05D001158 ORTHO05D000964 8.5e-06 54.3 95 32.6


User provided reference genes

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