Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 4.6e-70 267.7 127 100.0
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 4.3e-68 261.2 127 95.3
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 3.6e-67 258.1 127 95.3
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 8.1e-67 256.9 127 94.5
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 1.1e-66 256.5 127 94.5
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 2.3e-66 255.4 127 95.3
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 3.1e-66 255.0 127 94.5
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 4.0e-66 254.6 127 94.5
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 4.4e-65 251.1 127 92.9
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 2.9e-64 248.4 127 89.8
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 2.9e-64 248.4 126 91.3
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 2.9e-64 248.4 126 92.1
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 3.7e-64 248.1 127 90.6
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 3.7e-64 248.1 126 92.1
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 4.9e-64 247.7 127 91.3
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 6.4e-64 247.3 127 92.1
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 8.3e-64 246.9 127 90.6
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 1.1e-63 246.5 127 89.8
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 1.9e-63 245.7 126 92.1
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 2.4e-63 245.4 127 89.0
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 3.2e-63 245.0 127 91.3
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 4.1e-63 244.6 127 90.6
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 4.1e-63 244.6 127 89.8
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 5.4e-63 244.2 127 90.6
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 7.1e-63 243.8 127 89.8
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 7.1e-63 243.8 127 89.0
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 9.2e-63 243.4 127 89.0
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 9.2e-63 243.4 127 89.0
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 9.2e-63 243.4 127 90.6
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 1.2e-62 243.0 126 90.5
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 2.1e-62 242.3 127 89.0
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 2.7e-62 241.9 127 89.8
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 4.6e-62 241.1 127 89.0
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 4.6e-62 241.1 127 89.0
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 4.6e-62 241.1 127 89.8
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 4.6e-62 241.1 127 87.4
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 6.0e-62 240.7 127 87.4
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 6.0e-62 240.7 127 88.2
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 6.0e-62 240.7 127 88.2
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 6.0e-62 240.7 127 86.6
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 7.8e-62 240.4 127 88.2
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 7.8e-62 240.4 126 88.9
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 1.0e-61 240.0 127 89.0
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.0e-61 240.0 127 89.0
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.0e-61 240.0 127 89.0
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 1.0e-61 240.0 126 88.1
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 1.3e-61 239.6 127 87.4
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 1.3e-61 239.6 127 86.6
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 1.7e-61 239.2 128 88.3
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 1.7e-61 239.2 126 88.9
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 2.3e-61 238.8 127 88.2
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 3.9e-61 238.0 127 89.0
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 5.1e-61 237.7 127 85.8
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 5.1e-61 237.7 127 85.8
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 5.1e-61 237.7 127 85.8
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 6.6e-61 237.3 127 89.0
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 6.6e-61 237.3 126 86.5
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 8.6e-61 236.9 127 85.8
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 8.6e-61 236.9 127 86.6
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 8.6e-61 236.9 126 86.5
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 8.6e-61 236.9 127 88.2
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 2.5e-60 235.3 127 84.3
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 2.5e-60 235.3 126 85.7
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 3.3e-60 235.0 127 85.0
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 3.3e-60 235.0 127 85.0
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 3.3e-60 235.0 125 87.2
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 3.3e-60 235.0 127 87.4
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 4.3e-60 234.6 127 85.0
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 4.3e-60 234.6 126 85.7
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 5.6e-60 234.2 127 84.3
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 5.6e-60 234.2 127 85.0
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 7.3e-60 233.8 127 85.8
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 7.3e-60 233.8 127 85.8
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 7.3e-60 233.8 127 85.0
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 9.5e-60 233.4 127 85.0
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 9.5e-60 233.4 127 85.8
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 1.2e-59 233.0 126 84.9
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 1.2e-59 233.0 126 84.9
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 1.2e-59 233.0 126 84.9
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 1.2e-59 233.0 127 84.3
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 1.2e-59 233.0 126 86.5
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 1.2e-59 233.0 127 84.3
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 1.6e-59 232.6 127 86.6
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 1.6e-59 232.6 127 85.8
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 2.1e-59 232.3 127 86.6
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 2.1e-59 232.3 126 86.5
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 3.6e-59 231.5 127 82.7
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 4.7e-59 231.1 127 84.3
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 4.7e-59 231.1 126 84.1
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 6.2e-59 230.7 127 85.8
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 8.1e-59 230.3 127 83.5
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.1e-58 229.9 127 84.3
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 1.1e-58 229.9 126 84.9
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 1.1e-58 229.9 127 82.7
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 1.4e-58 229.6 127 84.3
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 4.0e-58 228.0 127 84.3
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 8.9e-58 226.9 127 85.8
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 2.0e-57 225.7 127 85.0
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 2.0e-57 225.7 127 81.1
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 2.0e-57 225.7 126 81.7
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 2.0e-57 225.7 126 81.7
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 2.0e-57 225.7 126 81.7
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 2.0e-57 225.7 126 81.7
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 5.8e-57 224.2 127 82.7
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 9.9e-57 223.4 163 69.9
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 2.2e-56 222.2 127 81.9
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 2.9e-56 221.9 126 84.9
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 4.9e-56 221.1 127 81.9
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 6.4e-56 220.7 127 78.0
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 6.4e-56 220.7 126 80.2
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.4e-55 219.5 127 77.2
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 1.9e-55 219.2 126 80.2
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 1.2e-54 216.5 117 86.3
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 2.1e-54 215.7 129 76.7
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 1.3e-53 213.0 122 79.5
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 1.3e-48 196.4 128 74.2
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 2.2e-48 195.7 127 78.0
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 2.4e-47 192.2 127 70.9
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 1.5e-44 183.0 126 63.5
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 2.5e-44 182.2 126 67.5
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 1.3e-43 179.9 127 64.6
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 2.8e-43 178.7 129 65.1
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 2.4e-42 175.6 90 92.2
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 3.1e-42 175.3 137 62.8
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 3.1e-42 175.3 126 61.9
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.3e-40 169.9 90 91.1
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 3.8e-40 168.3 93 87.1
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.4e-39 164.5 90 88.9
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 7.9e-38 160.6 100 79.0
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.0e-37 158.7 95 83.2
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.1e-37 157.9 89 87.6
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 6.7e-37 157.5 90 86.7
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 1.1e-36 156.8 88 85.2
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 9.6e-36 153.7 89 84.3
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.3e-35 153.3 93 80.6
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 2.1e-35 152.5 80 86.2
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 8.1e-35 150.6 127 60.6
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 1.1e-34 150.2 87 81.6
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 1.5e-33 146.4 93 72.0
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 9.3e-31 137.1 72 90.3
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 1.5e-28 129.8 99 61.6
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 2.5e-28 129.0 80 76.2
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.3e-28 128.6 70 87.1
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 3.1e-26 122.1 109 54.1
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 3.0e-21 105.5 89 59.6
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 2.2e-19 99.4 57 78.9
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 1.2e-17 93.6 129 38.0
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 4.3e-12 75.1 37 78.4


User provided reference genes

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