Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39637 Trifolium pratense HOM05D004067 ORTHO05D004827 1.5e-40 169.1 86 100.0
TPR.G39266 Trifolium pratense HOM05D004067 ORTHO05D004827 2.2e-36 155.2 86 91.9
Psat0s1827g0080 Pisum sativum HOM05D004067 ORTHO05D004827 5.9e-29 130.6 93 71.0
Psat0s2696g0240 Pisum sativum HOM05D004067 ORTHO05D004827 5.9e-29 130.6 93 71.0
Psat0s4857g0040 Pisum sativum HOM05D004067 ORTHO05D004827 5.9e-29 130.6 93 71.0
Medtr1g030760 Medicago truncatula HOM05D004067 ORTHO05D004827 2.2e-28 128.6 87 75.9
Psat0s2696g0040 Pisum sativum HOM05D004067 ORTHO05D004827 2.2e-28 128.6 93 69.9
Psat0s2696g0160 Pisum sativum HOM05D004067 ORTHO05D004827 2.2e-28 128.6 93 69.9
Psat0s12802g0040 Pisum sativum HOM05D004067 ORTHO05D004827 2.9e-28 128.3 93 69.9
Psat0s8196g0040 Pisum sativum HOM05D004067 ORTHO05D004827 6.5e-28 127.1 93 68.8
Psat6g042640 Pisum sativum HOM05D004067 ORTHO05D004827 8.5e-28 126.7 93 68.8
Psat0s10301g0080 Pisum sativum HOM05D004067 ORTHO05D004827 2.7e-26 121.7 93 67.7
Ca_12604_v3 Cicer arietinum L. HOM05D004067 ORTHO05D004827 3.6e-26 121.3 92 67.4
Ca_25714_v3 Cicer arietinum L. HOM05D004067 ORTHO05D004827 3.6e-26 121.3 92 67.4
Psat0s6339g0160 Pisum sativum HOM05D004067 ORTHO05D004827 2.3e-25 118.6 93 66.7
TPR.G21639 Trifolium pratense HOM05D004067 ORTHO05D004827 8.8e-25 116.7 94 63.8
Lalb_Chr01g0007191 Lupinus albus HOM05D004067 ORTHO05D004827 4.8e-23 110.9 90 62.2
Lalb_Chr10g0096231 Lupinus albus HOM05D004067 ORTHO05D004827 5.3e-22 107.5 78 69.2
Medtr6g021910 Medicago truncatula HOM05D004067 ORTHO05D004827 1.2e-21 106.3 92 59.8
Haze_11008 Corylus avellana HOM05D004067 ORTHO05D004827 2.7e-21 105.1 84 59.5
VMungo1309G2882 Vigna mungo HOM05D004067 ORTHO05D004827 5.9e-21 104.0 88 62.5
Phvul.009G073100 Phaseolus vulgaris HOM05D004067 ORTHO05D004827 1.0e-20 103.2 92 58.7
Glyma.09G118400 Glycine max HOM05D004067 ORTHO05D004827 2.2e-20 102.1 78 65.4
arahy.Tifrunner.gnm1.ann1.KUY2JB Arachis hypogaea HOM05D004067 ORTHO05D004827 2.9e-20 101.7 81 59.3
arahy.Tifrunner.gnm1.ann1.Z6YRHE Arachis hypogaea HOM05D004067 ORTHO05D004827 2.9e-20 101.7 81 59.3
Cfa008606 Carpinus fangiana HOM05D004067 ORTHO05D004827 8.5e-20 100.1 82 61.0
TPR.G4489 Trifolium pratense HOM05D004067 ORTHO05D004827 8.5e-20 100.1 82 59.8
MELO3C018333.2 Cucumis melo HOM05D004067 ORTHO05D004827 1.1e-19 99.8 78 61.5
Potri.001G156300 Populus trichocarpa HOM05D004067 ORTHO05D004827 1.1e-19 99.8 77 61.0
Lj2g0007524 Lotus japonicus HOM05D004067 ORTHO05D004827 1.9e-19 99.0 61 73.8
ClCG07G006240 Citrullus lanatus HOM05D004067 ORTHO05D004827 3.2e-19 98.2 78 60.3
Medtr7g020840 Medicago truncatula HOM05D004067 ORTHO05D004827 1.2e-18 96.3 89 57.3
Phvul.008G019900 Phaseolus vulgaris HOM05D004067 ORTHO05D004827 1.2e-18 96.3 90 56.7
Cpa.g.sc65.131 Carica papaya HOM05D004067 ORTHO05D004827 2.1e-18 95.5 80 58.8
Glyma.08G257000 Glycine max HOM05D004067 ORTHO05D004827 3.6e-18 94.7 88 58.0
Lj1g0003353 Lotus japonicus HOM05D004067 ORTHO05D004827 3.6e-18 94.7 60 68.3
CsaV3_5G013550 Cucumis sativus L. HOM05D004067 ORTHO05D004827 4.7e-18 94.4 78 57.7
CsaV3_UNG236440 Cucumis sativus L. HOM05D004067 ORTHO05D004827 4.7e-18 94.4 78 57.7
Potri.006G111600 Populus trichocarpa HOM05D004067 ORTHO05D004827 4.7e-18 94.4 80 58.8
TAR627G0408 Trochodendron aralioides HOM05D004067 ORTHO05D004827 4.7e-18 94.4 87 57.5
Duzib251G0172 Durio zibethinus HOM05D004067 ORTHO05D004827 6.1e-18 94.0 80 57.5
THA.LOC104805062 Tarenaya hassleriana HOM05D004067 ORTHO05D004827 6.1e-18 94.0 81 54.3
GSVIVG01011761001 Vitis vinifera HOM05D004067 ORTHO05D004827 6.1e-18 94.0 86 55.8
PGSC0003DMG400030500 Solanum tuberosum HOM05D004067 ORTHO05D004827 8.0e-18 93.6 75 58.7
TWI81G0187 Tripterygium wilfordii HOM05D004067 ORTHO05D004827 8.0e-18 93.6 78 57.7
CSS0041256 Camellia sinensis var. sinensis HOM05D004067 ORTHO05D004827 1.0e-17 93.2 82 57.3
Nn3g18214 Nelumbo nucifera HOM05D004067 ORTHO05D004827 1.4e-17 92.8 86 53.5
Sed0006623 Sechium edule HOM05D004067 ORTHO05D004827 1.4e-17 92.8 77 59.7
AL5G10370 Arabidopsis lyrata HOM05D004067 ORTHO05D004827 1.8e-17 92.4 59 69.5
AT2G01410 Arabidopsis thaliana HOM05D004067 ORTHO05D004827 1.8e-17 92.4 80 58.8
Gohir.A01G152600 Gossypium hirsutum HOM05D004067 ORTHO05D004827 2.3e-17 92.0 72 58.3
CARHR143920 Cardamine hirsuta HOM05D004067 ORTHO05D004827 3.0e-17 91.7 82 56.1
FvH4_4g32390 Fragaria vesca HOM05D004067 ORTHO05D004827 3.0e-17 91.7 84 53.6
Gohir.D01G145500 Gossypium hirsutum HOM05D004067 ORTHO05D004827 3.0e-17 91.7 72 56.9
Psat3g190280 Pisum sativum HOM05D004067 ORTHO05D004827 3.0e-17 91.7 82 52.4
BcaC04g21591 Brassica carinata HOM05D004067 ORTHO05D004827 4.0e-17 91.3 78 57.7
C09p30090 Brassica napus HOM05D004067 ORTHO05D004827 4.0e-17 91.3 78 57.7
BolC9t55873H Brassica oleracea HOM05D004067 ORTHO05D004827 4.0e-17 91.3 78 57.7
CiPaw.05G249400 Carya illinoinensis HOM05D004067 ORTHO05D004827 4.0e-17 91.3 82 56.1
Dinv07642 Davidia involucrata HOM05D004067 ORTHO05D004827 4.0e-17 91.3 84 53.6
Dinv12988 Davidia involucrata HOM05D004067 ORTHO05D004827 4.0e-17 91.3 84 53.6
Nn2g15268 Nelumbo nucifera HOM05D004067 ORTHO05D004827 4.0e-17 91.3 61 63.9
Carub.0005s0037 Capsella rubella HOM05D004067 ORTHO05D004827 5.2e-17 90.9 76 57.9
Dinv12989 Davidia involucrata HOM05D004067 ORTHO05D004827 6.8e-17 90.5 88 54.5
Gorai.002G179700 Gossypium raimondii HOM05D004067 ORTHO05D004827 8.8e-17 90.1 73 58.9
VMungo1383G0958 Vigna mungo HOM05D004067 ORTHO05D004827 8.8e-17 90.1 76 59.2
A09p23340 Brassica napus HOM05D004067 ORTHO05D004827 1.2e-16 89.7 78 56.4
BraA09t37935Z Brassica rapa HOM05D004067 ORTHO05D004827 1.2e-16 89.7 78 56.4
Duzib248G1046 Durio zibethinus HOM05D004067 ORTHO05D004827 1.2e-16 89.7 75 60.0
Sp2g12840 Schrenkiella parvula HOM05D004067 ORTHO05D004827 1.2e-16 89.7 78 55.1
Sopen05g003980 Solanum pennellii HOM05D004067 ORTHO05D004827 1.2e-16 89.7 73 58.9
Thecc.02G281200 Theobroma cacao HOM05D004067 ORTHO05D004827 1.2e-16 89.7 75 56.0
CANSAT35G0597 Cannabis sativa HOM05D004067 ORTHO05D004827 1.5e-16 89.4 82 51.2
Aa31LG2G8540 Aethionema arabicum HOM05D004067 ORTHO05D004827 2.0e-16 89.0 78 52.6
BcaB07g30747 Brassica carinata HOM05D004067 ORTHO05D004827 2.6e-16 88.6 81 56.8
Ciclev10015653m.g Citrus clementina HOM05D004067 ORTHO05D004827 2.6e-16 88.6 78 57.7
FAN07G2052 Fragaria x ananassa HOM05D004067 ORTHO05D004827 2.6e-16 88.6 84 52.4
FAN12G3660 Fragaria x ananassa HOM05D004067 ORTHO05D004827 2.6e-16 88.6 84 52.4
Lj3P873T10 Lonicera japonica HOM05D004067 ORTHO05D004827 2.6e-16 88.6 78 59.0
Ca_07073_v3 Cicer arietinum L. HOM05D004067 ORTHO05D004827 3.4e-16 88.2 85 54.1
FAN17G2802 Fragaria x ananassa HOM05D004067 ORTHO05D004827 3.4e-16 88.2 75 54.7
Atru.chr11.1192 Acer truncatum HOM05D004067 ORTHO05D004827 4.4e-16 87.8 84 48.8
DCAR_007292 Daucus carota HOM05D004067 ORTHO05D004827 4.4e-16 87.8 72 55.6
BcaC06g34181 Brassica carinata HOM05D004067 ORTHO05D004827 5.7e-16 87.4 81 51.9
BcaC06g34189 Brassica carinata HOM05D004067 ORTHO05D004827 5.7e-16 87.4 81 51.9
CANSAT11G0808 Cannabis sativa HOM05D004067 ORTHO05D004827 5.7e-16 87.4 78 52.6
FAN22G1587 Fragaria x ananassa HOM05D004067 ORTHO05D004827 5.7e-16 87.4 75 54.7
Lsat_1_v5_gn_4_14640 Lactuca sativa HOM05D004067 ORTHO05D004827 5.7e-16 87.4 86 50.0
Atru.chr11.1779 Acer truncatum HOM05D004067 ORTHO05D004827 7.5e-16 87.0 86 51.2
Atru.chr11.1199 Acer truncatum HOM05D004067 ORTHO05D004827 9.8e-16 86.7 84 48.8
BcaC06g31313 Brassica carinata HOM05D004067 ORTHO05D004827 9.8e-16 86.7 77 53.2
C07p31800 Brassica napus HOM05D004067 ORTHO05D004827 9.8e-16 86.7 82 50.0
BolC7t43720H Brassica oleracea HOM05D004067 ORTHO05D004827 9.8e-16 86.7 82 50.0
Nitab4.5_0000742g0040 Nicotiana tabacum HOM05D004067 ORTHO05D004827 9.8e-16 86.7 77 58.4
THA.LOC104824143 Tarenaya hassleriana HOM05D004067 ORTHO05D004827 9.8e-16 86.7 76 55.3
Actinidia14967 Actinidia chinensis HOM05D004067 ORTHO05D004827 1.3e-15 86.3 78 51.3
Manes.12G111500 Manihot esculenta HOM05D004067 ORTHO05D004827 1.3e-15 86.3 78 53.8
Migut.E00421 Erythranthe guttata HOM05D004067 ORTHO05D004827 1.7e-15 85.9 61 62.3
Thhalv10001208m.g Eutrema salsugineum HOM05D004067 ORTHO05D004827 1.7e-15 85.9 78 53.8
HanXRQChr12g0377591 Helianthus annuus HOM05D004067 ORTHO05D004827 1.7e-15 85.9 85 54.1
MD16G1028500 Malus domestica HOM05D004067 ORTHO05D004827 1.7e-15 85.9 89 51.7
Sabra06G0086800 Salix brachista HOM05D004067 ORTHO05D004827 1.7e-15 85.9 82 54.9
COL.COLO4_20478 Corchorus olitorius HOM05D004067 ORTHO05D004827 2.2e-15 85.5 75 50.7
Lalb_Chr25g0280641 Lupinus albus HOM05D004067 ORTHO05D004827 2.2e-15 85.5 74 55.4
Actinidia36670 Actinidia chinensis HOM05D004067 ORTHO05D004827 3.7e-15 84.7 70 50.0
Manes.12G111400 Manihot esculenta HOM05D004067 ORTHO05D004827 4.8e-15 84.3 78 53.8
Sc04g0005490 Simmondsia chinensis HOM05D004067 ORTHO05D004827 4.8e-15 84.3 78 51.3
MSTRG.13583 Avicennia marina HOM05D004067 ORTHO05D004827 8.3e-15 83.6 76 52.6
Prupe.1G324200 Prunus persica HOM05D004067 ORTHO05D004827 1.1e-14 83.2 78 52.6
QL01p001776 Quercus lobata HOM05D004067 ORTHO05D004827 1.1e-14 83.2 77 51.9
Solyc04g007660.1 Solanum lycopersicum HOM05D004067 ORTHO05D004827 1.1e-14 83.2 74 51.4
Aqoxy5G03134 Aquilegia oxysepala HOM05D004067 ORTHO05D004827 1.4e-14 82.8 77 51.9
Hma1.2p1_0346F.1_g131330 Hydrangea macrophylla HOM05D004067 ORTHO05D004827 1.4e-14 82.8 82 47.6
Hma1.2p1_0346F.1_g131336 Hydrangea macrophylla HOM05D004067 ORTHO05D004827 1.4e-14 82.8 82 47.6
PGSC0003DMG400005957 Solanum tuberosum HOM05D004067 ORTHO05D004827 1.8e-14 82.4 74 51.4
MSTRG.2173 Avicennia marina HOM05D004067 ORTHO05D004827 2.4e-14 82.0 64 56.2
Sopen04g002750 Solanum pennellii HOM05D004067 ORTHO05D004827 2.4e-14 82.0 75 50.7
CAN.G1298.2 Capsicum annuum HOM05D004067 ORTHO05D004827 3.1e-14 81.6 81 50.6
Cc02_g26910 Coffea canephora HOM05D004067 ORTHO05D004827 3.1e-14 81.6 59 57.6
ECA234G3105 Erigeron canadensis HOM05D004067 ORTHO05D004827 3.1e-14 81.6 86 51.2
PGR119G1546 Punica granatum HOM05D004067 ORTHO05D004827 3.1e-14 81.6 59 61.0
CSS0042578 Camellia sinensis var. sinensis HOM05D004067 ORTHO05D004827 5.4e-14 80.9 85 50.6
SalBow1G2245 Salvia bowleyana HOM05D004067 ORTHO05D004827 5.4e-14 80.9 75 52.0
Eucgr.H00672 Eucalyptus grandis HOM05D004067 ORTHO05D004827 1.2e-13 79.7 78 48.7
Psat0s2696g0200 Pisum sativum HOM05D004067 ORTHO05D004827 1.2e-13 79.7 57 68.4
Nitab4.5_0001832g0050 Nicotiana tabacum HOM05D004067 ORTHO05D004827 1.6e-13 79.3 78 48.7
Nitab4.5_0007576g0010 Nicotiana tabacum HOM05D004067 ORTHO05D004827 1.6e-13 79.3 78 48.7
Oeu045868.1 Olea europaea HOM05D004067 ORTHO05D004827 2.0e-13 79.0 78 50.0
Eucgr.L01715 Eucalyptus grandis HOM05D004067 ORTHO05D004827 4.5e-13 77.8 73 50.7
Oeu059504.1 Olea europaea HOM05D004067 ORTHO05D004827 5.9e-13 77.4 77 46.8
SHI04655 Sapria himalayana HOM05D004067 ORTHO05D004827 5.9e-13 77.4 86 47.7
PSO017G4920 Papaver somniferum HOM05D004067 ORTHO05D004827 3.8e-12 74.7 78 52.6
PSO478G1363 Papaver somniferum HOM05D004067 ORTHO05D004827 5.0e-12 74.3 82 51.2
Lj6A746T53 Lonicera japonica HOM05D004067 ORTHO05D004827 3.3e-11 71.6 56 58.9
SGA_v2.0_scaffold257G45678 Striga asiatica HOM05D004067 ORTHO05D004827 2.8e-10 68.6 80 43.8
TAR627G0040 Trochodendron aralioides HOM05D004067 ORTHO05D004827 8.0e-10 67.0 84 45.2
Ah.07g197270 Amaranthus hybridus HOM05D004067 ORTHO05D004827 9.8e-08 60.1 80 40.0
Peaxi162Scf00253g01313 Petunia axillaris HOM05D004067 ORTHO05D004827 1.3e-07 59.7 82 40.2
ATR0053G001 Amborella trichopoda HOM05D004067 ORTHO05D004827 2.2e-07 58.9 67 41.8
SEGI_06567 Sequoiadendron giganteum HOM05D004067 ORTHO05D004827 4.9e-07 57.8 71 39.4
Rhsim09G0097800 Rhododendron simsii HOM05D004067 ORTHO05D004827 1.1e-06 56.6 81 42.0
Ah.12g052420 Amaranthus hybridus HOM05D004067 ORTHO05D004827 1.8e-06 55.8 55 49.1
HPP92_008055 Vanilla planifolia HOM05D004067 ORTHO05D004827 1.8e-06 55.8 80 40.0
Medtr3g070770 Medicago truncatula HOM05D004067 ORTHO05D004827 3.1e-06 55.1 86 39.5
unitig_27.g25177 Utricularia gibba HOM05D004067 ORTHO05D004827 3.1e-06 55.1 84 34.5
unitig_29.g31872 Utricularia gibba HOM05D004067 ORTHO05D004827 3.1e-06 55.1 84 34.5


User provided reference genes

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