Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39557 Trifolium pratense HOM05D007935 ORTHO05D007393 1.8e-75 285.8 141 100.0
Medtr1g096290 Medicago truncatula HOM05D007935 ORTHO05D007393 9.9e-58 226.9 143 83.9
Psat6g186560 Pisum sativum HOM05D007935 ORTHO05D007393 5.3e-43 177.9 143 69.9
Glyma.20G176200 Glycine max HOM05D007935 ORTHO05D007393 4.3e-29 131.7 156 49.4
Glyma.10G215500 Glycine max HOM05D007935 ORTHO05D007393 1.0e-25 120.6 155 46.5
Phvul.004G084000 Phaseolus vulgaris HOM05D007935 ORTHO05D007393 3.8e-25 118.6 157 43.3
Lj2g0007380 Lotus japonicus HOM05D007935 ORTHO05D007393 1.1e-24 117.1 163 44.2
Lalb_Chr01g0010021 Lupinus albus HOM05D007935 ORTHO05D007393 4.2e-24 115.2 152 50.0
Glyma.02G074300 Glycine max HOM05D007935 ORTHO05D007393 3.6e-23 112.1 159 45.3
Glyma.16G156000 Glycine max HOM05D007935 ORTHO05D007393 2.0e-21 106.3 157 43.3
Lalb_Chr19g0129781 Lupinus albus HOM05D007935 ORTHO05D007393 3.3e-21 105.5 159 45.9
Lj5g0011924 Lotus japonicus HOM05D007935 ORTHO05D007393 1.1e-19 100.5 162 46.9
Phvul.007G090200 Phaseolus vulgaris HOM05D007935 ORTHO05D007393 1.8e-19 99.8 154 42.9
QL02p034017 Quercus lobata HOM05D007935 ORTHO05D007393 1.0e-17 94.0 172 37.8
VMungo0464G1609 Vigna mungo HOM05D007935 ORTHO05D007393 2.9e-17 92.4 165 37.0
arahy.Tifrunner.gnm1.ann1.B1B3Q7 Arachis hypogaea HOM05D007935 ORTHO05D007393 2.5e-16 89.4 163 39.3
arahy.Tifrunner.gnm1.ann1.QZIQ5C Arachis hypogaea HOM05D007935 ORTHO05D007393 7.2e-16 87.8 165 40.0
Manes.02G191100 Manihot esculenta HOM05D007935 ORTHO05D007393 1.6e-15 86.7 175 36.0
arahy.Tifrunner.gnm1.ann1.DLN685 Arachis hypogaea HOM05D007935 ORTHO05D007393 3.0e-14 82.4 166 37.3
Duzib177G0305 Durio zibethinus HOM05D007935 ORTHO05D007393 5.2e-14 81.6 160 33.1
Cfa018195 Carpinus fangiana HOM05D007935 ORTHO05D007393 6.7e-14 81.3 167 34.7
Thecc.08G181700 Theobroma cacao HOM05D007935 ORTHO05D007393 8.8e-14 80.9 153 35.9
COL.COLO4_16292 Corchorus olitorius HOM05D007935 ORTHO05D007393 4.4e-13 78.6 145 35.9
Dinv08012 Davidia involucrata HOM05D007935 ORTHO05D007393 5.7e-13 78.2 152 36.8
Cpa.g.sc66.51 Carica papaya HOM05D007935 ORTHO05D007393 7.4e-13 77.8 162 34.6
PGSC0003DMG400009223 Solanum tuberosum HOM05D007935 ORTHO05D007393 3.7e-12 75.5 153 35.3
Potri.013G114000 Populus trichocarpa HOM05D007935 ORTHO05D007393 1.4e-11 73.6 170 35.9
CiPaw.16G062200 Carya illinoinensis HOM05D007935 ORTHO05D007393 3.1e-11 72.4 173 34.7
Dinv41698 Davidia involucrata HOM05D007935 ORTHO05D007393 4.1e-11 72.0 151 35.1
CSS0018652 Camellia sinensis var. sinensis HOM05D007935 ORTHO05D007393 7.0e-11 71.2 155 34.2
Prupe.8G056300 Prunus persica HOM05D007935 ORTHO05D007393 7.0e-11 71.2 172 33.1
FAN12G0476 Fragaria x ananassa HOM05D007935 ORTHO05D007393 1.2e-10 70.5 175 33.7
Solyc11g017390.2 Solanum lycopersicum HOM05D007935 ORTHO05D007393 2.0e-10 69.7 153 33.3
CiPaw.15G082200 Carya illinoinensis HOM05D007935 ORTHO05D007393 7.7e-10 67.8 153 33.3
FvH4_4g19940 Fragaria vesca HOM05D007935 ORTHO05D007393 7.7e-10 67.8 173 32.4
Gohir.A09G117400 Gossypium hirsutum HOM05D007935 ORTHO05D007393 1.0e-09 67.4 166 32.5
Ciclev10003091m.g Citrus clementina HOM05D007935 ORTHO05D007393 1.7e-09 66.6 139 35.3
TAR376G0933 Trochodendron aralioides HOM05D007935 ORTHO05D007393 1.7e-09 66.6 170 33.5
Sabra19G0095700 Salix brachista HOM05D007935 ORTHO05D007393 2.2e-09 66.2 170 30.6
Sopen11g009330 Solanum pennellii HOM05D007935 ORTHO05D007393 2.9e-09 65.9 155 31.6
Potri.019G084500 Populus trichocarpa HOM05D007935 ORTHO05D007393 6.5e-09 64.7 174 30.5
TAR628G0171 Trochodendron aralioides HOM05D007935 ORTHO05D007393 6.5e-09 64.7 170 33.5
Nn1g08393 Nelumbo nucifera HOM05D007935 ORTHO05D007393 8.5e-09 64.3 172 29.1
Rhsim06G0096700 Rhododendron simsii HOM05D007935 ORTHO05D007393 8.5e-09 64.3 169 29.6
Nitab4.5_0000560g0100 Nicotiana tabacum HOM05D007935 ORTHO05D007393 1.5e-08 63.5 171 31.6
Peaxi162Scf00310g00073 Petunia axillaris HOM05D007935 ORTHO05D007393 2.5e-08 62.8 181 30.9
Manes.18G100400 Manihot esculenta HOM05D007935 ORTHO05D007393 3.2e-08 62.4 181 32.6
Haze_17920 Corylus avellana HOM05D007935 ORTHO05D007393 4.2e-08 62.0 155 32.9
Oeu039600.1 Olea europaea HOM05D007935 ORTHO05D007393 7.2e-08 61.2 154 33.8
Sabra13G0096500 Salix brachista HOM05D007935 ORTHO05D007393 7.2e-08 61.2 172 30.8
FAN07G1822 Fragaria x ananassa HOM05D007935 ORTHO05D007393 9.4e-08 60.8 172 30.8
TWI32G0406 Tripterygium wilfordii HOM05D007935 ORTHO05D007393 9.4e-08 60.8 155 29.7
Nitab4.5_0000422g0110 Nicotiana tabacum HOM05D007935 ORTHO05D007393 2.7e-07 59.3 191 28.3
PGR102G0669 Punica granatum HOM05D007935 ORTHO05D007393 2.7e-07 59.3 148 31.1
Atru.chr13.1798 Acer truncatum HOM05D007935 ORTHO05D007393 3.6e-07 58.9 169 32.5
Nn5g27748 Nelumbo nucifera HOM05D007935 ORTHO05D007393 4.7e-07 58.5 182 28.6
COL.COLO4_33532 Corchorus olitorius HOM05D009958 ORTHO05D007393 6.1e-07 58.2 180 31.1
Aqoxy2G00980 Aquilegia oxysepala HOM05D009958 ORTHO05D007393 1.4e-06 57.0 131 33.6
CsaV3_2G033460 Cucumis sativus L. HOM05D030816 ORTHO05D028878 1.4e-06 57.0 159 28.9
Sc23g0001170 Simmondsia chinensis HOM05D007935 ORTHO05D007393 2.3e-06 56.2 110 38.2
MELO3C008117.2 Cucumis melo HOM05D030816 ORTHO05D028878 3.0e-06 55.8 161 29.2
RcHm_v2.0_Chr6g0272051 Rosa chinensis HOM05D007935 ORTHO05D007393 4.0e-06 55.5 166 27.7
BcaB03g14909 Brassica carinata HOM05D010479 ORTHO05D007393 8.8e-06 54.3 159 30.8
BcaB03g14911 Brassica carinata HOM05D010479 ORTHO05D007393 8.8e-06 54.3 159 30.8


User provided reference genes

Program Settings