Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 4.2e-36 154.1 73 100.0
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 1.6e-35 152.1 72 100.0
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 1.5e-28 129.0 72 84.7
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 4.2e-28 127.5 73 79.5
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 2.1e-27 125.2 73 80.8
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 1.2e-25 119.4 71 80.3
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 2.6e-25 118.2 58 91.4
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 7.5e-25 116.7 73 78.1
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 7.5e-25 116.7 73 78.1
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 9.8e-25 116.3 71 76.1
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 1.3e-24 115.9 69 76.8
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 1.3e-24 115.9 71 77.5
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 2.2e-24 115.2 69 79.7
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 2.8e-24 114.8 69 78.3
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 3.7e-24 114.4 68 80.9
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 3.7e-24 114.4 71 76.1
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 4.9e-24 114.0 58 87.9
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 4.9e-24 114.0 58 87.9
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 4.9e-24 114.0 76 75.0
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 8.3e-24 113.2 58 86.2
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 8.3e-24 113.2 58 86.2
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 1.1e-23 112.8 69 76.8
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 1.1e-23 112.8 65 80.0
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 1.1e-23 112.8 58 87.9
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 1.4e-23 112.5 71 73.2
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 1.4e-23 112.5 69 75.4
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 1.8e-23 112.1 71 77.5
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 1.8e-23 112.1 73 74.0
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 1.8e-23 112.1 67 76.1
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 1.8e-23 112.1 57 86.0
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 1.8e-23 112.1 71 71.8
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 2.4e-23 111.7 68 77.9
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 2.4e-23 111.7 73 65.8
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 2.4e-23 111.7 73 71.2
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 2.4e-23 111.7 58 82.8
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 2.4e-23 111.7 69 76.8
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 2.4e-23 111.7 69 73.9
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 3.1e-23 111.3 69 78.3
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 3.1e-23 111.3 71 73.2
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 5.4e-23 110.5 72 73.6
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 9.1e-23 109.8 57 87.7
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 9.1e-23 109.8 70 75.7
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 9.1e-23 109.8 58 79.3
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 1.2e-22 109.4 75 69.3
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 1.2e-22 109.4 64 81.2
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 1.6e-22 109.0 69 72.5
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 2.0e-22 108.6 68 72.1
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 2.0e-22 108.6 68 73.5
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 2.0e-22 108.6 65 76.9
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 2.7e-22 108.2 71 70.4
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 3.5e-22 107.8 69 72.5
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 4.5e-22 107.5 72 70.8
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 4.5e-22 107.5 71 71.8
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 4.5e-22 107.5 71 73.2
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 5.9e-22 107.1 73 72.6
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 5.9e-22 107.1 68 73.5
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 5.9e-22 107.1 73 71.2
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 7.7e-22 106.7 72 73.6
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 1.0e-21 106.3 77 68.8
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 1.0e-21 106.3 76 67.1
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 1.0e-21 106.3 58 82.8
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 1.3e-21 105.9 73 69.9
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 1.3e-21 105.9 74 71.6
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 1.3e-21 105.9 74 71.6
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 1.3e-21 105.9 68 73.5
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 1.7e-21 105.5 58 81.0
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 1.7e-21 105.5 58 81.0
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 2.3e-21 105.1 75 70.7
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 3.8e-21 104.4 71 70.4
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 3.8e-21 104.4 71 70.4
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 6.6e-21 103.6 57 80.7
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 8.6e-21 103.2 78 69.2
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 8.6e-21 103.2 79 69.6
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 8.6e-21 103.2 75 69.3
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 8.6e-21 103.2 78 69.2
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 8.6e-21 103.2 68 70.6
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 8.6e-21 103.2 75 69.3
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 1.5e-20 102.4 67 71.6
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 3.3e-20 101.3 57 78.9
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 5.5e-20 100.5 82 63.4
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 9.5e-20 99.8 72 68.1
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 2.1e-19 98.6 57 78.9
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 2.8e-19 98.2 69 72.5
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 2.8e-19 98.2 69 71.0
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 4.7e-19 97.4 57 78.9
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 8.0e-19 96.7 69 71.0
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 8.0e-19 96.7 69 71.0
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.0e-18 96.3 67 71.6
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.0e-18 96.3 69 69.6
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 1.0e-18 96.3 80 63.8
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 1.0e-18 96.3 57 77.2
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 5.2e-18 94.0 69 69.6
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 5.2e-18 94.0 76 65.8
Pp3c21_18720 Physcomitrium patens HOM05D006982 ORTHO05D008909 1.2e-17 92.8 61 65.6
SMO164G0193 Selaginella moellendorffii HOM05D006982 ORTHO05D008909 2.6e-17 91.7 57 66.7
SEGI_41437 Sequoiadendron giganteum HOM05D006982 ORTHO05D008909 2.6e-17 91.7 58 65.5
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 1.6e-14 82.4 48 83.3
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 2.8e-11 71.6 34 91.2
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 3.6e-11 71.2 44 77.3
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 1.8e-10 68.9 71 47.9
Lj4A116T81 Lonicera japonica HOM05D006982 ORTHO05D008909 2.3e-10 68.6 48 62.5
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 3.1e-10 68.2 37 75.7
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 3.1e-10 68.2 37 75.7
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 4.0e-10 67.8 41 75.6
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 2.2e-08 62.0 34 82.4
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 5.4e-07 57.4 25 100.0
SHI03749 Sapria himalayana HOM05D006982 ORTHO05D000001 6.0e-06 53.9 47 51.1


User provided reference genes

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