Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39542 Trifolium pratense HOM05D005553 ORTHO05D006866 1.3e-23 112.1 53 100.0
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 6.9e-20 99.8 49 93.9
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 1.5e-19 98.6 51 86.3
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.6e-19 97.8 49 87.8
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 2.6e-19 97.8 49 87.8
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 4.5e-19 97.1 51 82.4
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 9.9e-19 95.9 49 89.8
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 1.7e-18 95.1 51 86.3
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 1.7e-18 95.1 49 85.7
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 2.9e-18 94.4 49 81.6
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 4.9e-18 93.6 49 81.6
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 6.4e-18 93.2 47 87.2
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 6.4e-18 93.2 49 79.6
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 6.4e-18 93.2 49 79.6
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 6.4e-18 93.2 49 79.6
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 8.4e-18 92.8 51 84.3
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 1.1e-17 92.4 51 84.3
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 1.1e-17 92.4 49 81.6
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 1.1e-17 92.4 49 81.6
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 1.4e-17 92.0 49 81.6
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 1.4e-17 92.0 49 83.7
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 1.4e-17 92.0 50 78.0
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 2.4e-17 91.3 47 83.0
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 2.4e-17 91.3 49 77.6
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 2.4e-17 91.3 51 76.5
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 2.4e-17 91.3 49 79.6
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 2.4e-17 91.3 49 81.6
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 3.2e-17 90.9 51 78.4
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 3.2e-17 90.9 47 80.9
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 4.2e-17 90.5 47 80.9
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 4.2e-17 90.5 49 77.6
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 4.2e-17 90.5 49 77.6
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 5.4e-17 90.1 49 79.6
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 5.4e-17 90.1 47 80.9
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 7.1e-17 89.7 47 83.0
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 7.1e-17 89.7 47 83.0
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 7.1e-17 89.7 47 83.0
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 7.1e-17 89.7 47 83.0
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 7.1e-17 89.7 49 77.6
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 7.1e-17 89.7 49 75.5
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 9.3e-17 89.4 51 80.4
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 1.2e-16 89.0 47 78.7
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 1.2e-16 89.0 50 80.0
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 1.2e-16 89.0 49 77.6
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 1.2e-16 89.0 51 80.4
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 1.6e-16 88.6 48 75.0
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 2.1e-16 88.2 45 80.0
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 2.1e-16 88.2 46 82.6
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 2.1e-16 88.2 49 77.6
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 2.7e-16 87.8 47 78.7
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 2.7e-16 87.8 47 78.7
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 2.7e-16 87.8 50 78.0
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 2.7e-16 87.8 50 78.0
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 3.5e-16 87.4 51 74.5
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 3.5e-16 87.4 51 76.5
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 4.6e-16 87.0 47 74.5
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 1.0e-15 85.9 48 70.8
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 1.0e-15 85.9 48 79.2
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 1.0e-15 85.9 47 80.9
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 1.8e-15 85.1 45 80.0
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 2.3e-15 84.7 49 73.5
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 2.3e-15 84.7 49 77.6
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 2.3e-15 84.7 50 72.0
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 2.3e-15 84.7 47 76.6
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 3.0e-15 84.3 50 72.0
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 3.0e-15 84.3 50 72.0
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 3.0e-15 84.3 50 72.0
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 3.0e-15 84.3 50 72.0
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 3.9e-15 84.0 50 70.0
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 3.9e-15 84.0 50 74.0
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 5.1e-15 83.6 50 76.0
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 5.1e-15 83.6 50 72.0
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 6.7e-15 83.2 51 68.6
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 6.7e-15 83.2 50 70.0
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 8.7e-15 82.8 47 70.2
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 1.5e-14 82.0 50 68.0
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 1.5e-14 82.0 49 67.3
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 1.9e-14 81.6 49 73.5
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 1.9e-14 81.6 50 68.0
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 1.9e-14 81.6 50 68.0
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 2.5e-14 81.3 49 69.4
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 4.3e-14 80.5 49 67.3
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 7.4e-14 79.7 49 69.4
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 9.6e-14 79.3 49 71.4
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 1.6e-13 78.6 46 76.1
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 1.6e-13 78.6 49 71.4
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 1.6e-13 78.6 42 81.0
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 4.8e-13 77.0 49 69.4
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 6.2e-13 76.6 38 84.2
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 4.0e-12 73.9 49 69.4
unitig_0.g371 Utricularia gibba HOM05D005553 ORTHO05D006866 5.8e-11 70.1 37 78.4
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 1.7e-10 68.6 48 66.7
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 8.4e-10 66.2 44 65.9
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.4e-09 65.5 51 56.9
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 4.2e-09 63.9 49 57.1
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 4.2e-09 63.9 49 57.1
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 5.5e-09 63.5 44 68.2
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 7.9e-08 59.7 47 55.3
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 7.9e-08 59.7 51 56.9
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 3.9e-07 57.4 51 54.9
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 3.9e-07 57.4 52 57.7
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 1.1e-06 55.8 51 54.9


User provided reference genes

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