Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39477 Trifolium pratense HOM05D006068 ORTHO05D007579 8.0e-58 226.9 114 100.0
TPR.G38132 Trifolium pratense HOM05D006068 ORTHO05D007579 6.2e-34 147.5 74 98.6
Medtr3g115240 Medicago truncatula HOM05D006068 ORTHO05D007579 2.3e-33 145.6 74 97.3
Ca_15436_v3 Cicer arietinum L. HOM05D006068 ORTHO05D007579 2.0e-32 142.5 74 93.2
Ca_15461_v3 Cicer arietinum L. HOM05D006068 ORTHO05D007579 2.0e-32 142.5 74 93.2
Lalb_Chr08g0246381 Lupinus albus HOM05D006068 ORTHO05D007579 2.0e-32 142.5 74 91.9
Psat5g011440 Pisum sativum HOM05D006068 ORTHO05D007579 2.0e-32 142.5 74 93.2
Phvul.009G010500 Phaseolus vulgaris HOM05D006068 ORTHO05D007579 4.4e-32 141.4 74 90.5
VMungo1309G0800 Vigna mungo HOM05D006068 ORTHO05D007579 4.4e-32 141.4 74 90.5
Glyma.04G018200 Glycine max HOM05D006068 ORTHO05D007579 1.3e-31 139.8 74 89.2
Lj1g0017550 Lotus japonicus HOM05D006068 ORTHO05D007579 1.9e-30 136.0 74 87.8
Manes.18G005700 Manihot esculenta HOM05D006068 ORTHO05D007579 1.9e-30 136.0 74 86.5
COL.COLO4_04004 Corchorus olitorius HOM05D006068 ORTHO05D007579 2.4e-30 135.6 74 85.1
Glyma.06G018500 Glycine max HOM05D006068 ORTHO05D007579 2.4e-30 135.6 74 86.5
Duzib093G0636 Durio zibethinus HOM05D006068 ORTHO05D007579 1.2e-29 133.3 74 83.8
Gohir.A01G106300 Gossypium hirsutum HOM05D006068 ORTHO05D007579 1.6e-29 132.9 74 83.8
Gohir.D01G092800 Gossypium hirsutum HOM05D006068 ORTHO05D007579 1.6e-29 132.9 74 83.8
Gorai.002G118100 Gossypium raimondii HOM05D006068 ORTHO05D007579 1.6e-29 132.9 74 83.8
MD15G1002300 Malus domestica HOM05D006068 ORTHO05D007579 1.6e-29 132.9 76 82.9
QL02p014005 Quercus lobata HOM05D006068 ORTHO05D007579 2.1e-29 132.5 74 83.8
Thecc.08G058200 Theobroma cacao HOM05D006068 ORTHO05D007579 2.1e-29 132.5 74 82.4
Atru.chr13.130 Acer truncatum HOM05D006068 ORTHO05D007579 2.7e-29 132.1 74 83.8
arahy.Tifrunner.gnm1.ann1.N0WG06 Arachis hypogaea HOM05D006068 ORTHO05D007579 3.5e-29 131.7 75 86.7
CiPaw.07G139200 Carya illinoinensis HOM05D006068 ORTHO05D007579 4.6e-29 131.3 74 83.8
Haze_22761 Corylus avellana HOM05D006068 ORTHO05D007579 4.6e-29 131.3 74 86.5
Lalb_Chr19g0131741 Lupinus albus HOM05D006068 ORTHO05D007579 4.6e-29 131.3 71 88.7
Prupe.1G354700 Prunus persica HOM05D006068 ORTHO05D007579 4.6e-29 131.3 74 83.8
Cpa.g.sc26.203 Carica papaya HOM05D006068 ORTHO05D007579 6.0e-29 131.0 74 81.1
MD08G1002600 Malus domestica HOM05D006068 ORTHO05D007579 6.0e-29 131.0 74 83.8
Potri.002G011000 Populus trichocarpa HOM05D006068 ORTHO05D007579 6.0e-29 131.0 74 85.1
CANSAT25G0130 Cannabis sativa HOM05D006068 ORTHO05D007579 7.8e-29 130.6 74 85.1
TWI36G0647 Tripterygium wilfordii HOM05D006068 ORTHO05D007579 7.8e-29 130.6 74 82.4
Potri.005G250000 Populus trichocarpa HOM05D006068 ORTHO05D007579 1.0e-28 130.2 74 82.4
Lj6A22T18 Lonicera japonica HOM05D006068 ORTHO05D007579 1.3e-28 129.8 74 82.4
arahy.Tifrunner.gnm1.ann1.M33Y2K Arachis hypogaea HOM05D006068 ORTHO05D007579 1.7e-28 129.4 75 85.3
CSS0004824 Camellia sinensis var. sinensis HOM05D006068 ORTHO05D007579 1.7e-28 129.4 74 81.1
Hma1.2p1_0507F.1_g168430 Hydrangea macrophylla HOM05D006068 ORTHO05D007579 1.7e-28 129.4 74 82.4
TAR625G0587 Trochodendron aralioides HOM05D006068 ORTHO05D007579 1.7e-28 129.4 74 81.1
Sabra05G0193600 Salix brachista HOM05D006068 ORTHO05D007579 2.3e-28 129.0 74 82.4
Cfa014066 Carpinus fangiana HOM05D006068 ORTHO05D007579 3.9e-28 128.3 74 83.8
Ciclev10001788m.g Citrus clementina HOM05D006068 ORTHO05D007579 3.9e-28 128.3 74 79.7
DCAR_023009 Daucus carota HOM05D006068 ORTHO05D007579 5.1e-28 127.9 74 82.4
Duzib116G0068 Durio zibethinus HOM05D006068 ORTHO05D007579 5.1e-28 127.9 74 79.7
Sp7g08270 Schrenkiella parvula HOM05D006068 ORTHO05D007579 5.1e-28 127.9 74 82.4
AT1G63610 Arabidopsis thaliana HOM05D006068 ORTHO05D007579 6.6e-28 127.5 70 85.7
BcaC03g16456 Brassica carinata HOM05D006068 ORTHO05D007579 6.6e-28 127.5 73 83.6
CARHR047740 Cardamine hirsuta HOM05D006068 ORTHO05D007579 6.6e-28 127.5 70 85.7
AUR62036882 Chenopodium quinoa HOM05D006068 ORTHO05D007579 6.6e-28 127.5 74 79.7
Lj6A2T21 Lonicera japonica HOM05D006068 ORTHO05D007579 6.6e-28 127.5 74 81.1
C02p42740 Brassica napus HOM05D006068 ORTHO05D007579 8.6e-28 127.1 86 72.1
Sabra02G0008300 Salix brachista HOM05D006068 ORTHO05D007579 8.6e-28 127.1 74 83.8
AL2G11620 Arabidopsis lyrata HOM05D006068 ORTHO05D007579 1.1e-27 126.7 70 87.1
A02p27010 Brassica napus HOM05D006068 ORTHO05D007579 1.1e-27 126.7 86 72.1
BolC2t10310H Brassica oleracea HOM05D006068 ORTHO05D007579 1.1e-27 126.7 86 72.1
BraA02t07716Z Brassica rapa HOM05D006068 ORTHO05D007579 1.1e-27 126.7 86 72.1
FvH4_2g37520 Fragaria vesca HOM05D006068 ORTHO05D007579 1.1e-27 126.7 75 81.3
FAN15G0111 Fragaria x ananassa HOM05D006068 ORTHO05D007579 1.5e-27 126.3 76 80.3
Sed0006319 Sechium edule HOM05D006068 ORTHO05D007579 1.5e-27 126.3 74 78.4
ClCG08G009470 Citrullus lanatus HOM05D006068 ORTHO05D007579 1.9e-27 125.9 74 81.1
BcaC06g31004 Brassica carinata HOM05D006068 ORTHO05D007579 2.5e-27 125.6 73 82.2
SalBow7G3932 Salvia bowleyana HOM05D006068 ORTHO05D007579 2.5e-27 125.6 73 80.8
FAN27G1916 Fragaria x ananassa HOM05D006068 ORTHO05D007579 3.3e-27 125.2 75 80.0
Rhsim06G0007800 Rhododendron simsii HOM05D006068 ORTHO05D007579 3.3e-27 125.2 74 79.7
TWI56G1411 Tripterygium wilfordii HOM05D006068 ORTHO05D007579 3.3e-27 125.2 74 82.4
FAN20G0518 Fragaria x ananassa HOM05D006068 ORTHO05D007579 4.3e-27 124.8 74 81.1
PSO541G0168 Papaver somniferum HOM05D006068 ORTHO05D007579 4.3e-27 124.8 74 81.1
RcHm_v2.0_Chr6g0304221 Rosa chinensis HOM05D006068 ORTHO05D007579 4.3e-27 124.8 75 80.0
SGA_v2.0_scaffold108G30857 Striga asiatica HOM05D006068 ORTHO05D007579 4.3e-27 124.8 75 78.7
SGA_v2.0_scaffold275G46600 Striga asiatica HOM05D006068 ORTHO05D007579 4.3e-27 124.8 74 79.7
CsaV3_6G031610 Cucumis sativus L. HOM05D006068 ORTHO05D007579 5.6e-27 124.4 74 78.4
RcHm_v2.0_Chr5g0060651 Rosa chinensis HOM05D006068 ORTHO05D007579 5.6e-27 124.4 74 81.1
CSS0019755 Camellia sinensis var. sinensis HOM05D006068 ORTHO05D007579 7.3e-27 124.0 74 75.7
Migut.C00957 Erythranthe guttata HOM05D006068 ORTHO05D007579 7.3e-27 124.0 74 79.7
THA.LOC104806922 Tarenaya hassleriana HOM05D006068 ORTHO05D007579 7.3e-27 124.0 74 78.4
vmacro21821 Vaccinium macrocarpon HOM05D006068 ORTHO05D007579 7.3e-27 124.0 74 78.4
Actinidia17036 Actinidia chinensis HOM05D006068 ORTHO05D007579 9.6e-27 123.6 74 78.4
Carub.0002s0126 Capsella rubella HOM05D006068 ORTHO05D007579 9.6e-27 123.6 70 84.3
TAR381G1212 Trochodendron aralioides HOM05D006068 ORTHO05D007579 9.6e-27 123.6 74 77.0
GSVIVG01008675001 Vitis vinifera HOM05D006068 ORTHO05D007579 1.2e-26 123.2 74 79.7
MELO3C026542.2 Cucumis melo HOM05D006068 ORTHO05D007579 1.6e-26 122.9 74 78.4
PSO675G2053 Papaver somniferum HOM05D006068 ORTHO05D007579 2.1e-26 122.5 74 78.4
Nn5g30933 Nelumbo nucifera HOM05D006068 ORTHO05D007579 2.8e-26 122.1 74 77.0
Ah.11g041010 Amaranthus hybridus HOM05D006068 ORTHO05D007579 3.6e-26 121.7 74 77.0
MSTRG.1108 Avicennia marina HOM05D006068 ORTHO05D007579 3.6e-26 121.7 73 76.7
RcHm_v2.0_Chr6g0270451 Rosa chinensis HOM05D006068 ORTHO05D007579 3.6e-26 121.7 75 78.7
Aqoxy6G01735 Aquilegia oxysepala HOM05D006068 ORTHO05D007579 4.7e-26 121.3 74 77.0
unitig_82.g27117 Utricularia gibba HOM05D006068 ORTHO05D007579 4.7e-26 121.3 74 75.7
ATR0661G354 Amborella trichopoda HOM05D006068 ORTHO05D007579 1.4e-25 119.8 74 75.7
Sc02g0009080 Simmondsia chinensis HOM05D006068 ORTHO05D007579 1.4e-25 119.8 74 77.0
EL10Ac1g01974 Beta vulgaris HOM05D006068 ORTHO05D007579 1.8e-25 119.4 74 77.0
Lj4A11G71 Lonicera japonica HOM05D006068 ORTHO05D007579 1.8e-25 119.4 74 74.3
Solyc04g082310.3 Solanum lycopersicum HOM05D006068 ORTHO05D007579 2.4e-25 119.0 74 73.0
Sopen04g035930 Solanum pennellii HOM05D006068 ORTHO05D007579 2.4e-25 119.0 74 73.0
Peaxi162Scf00893g00430 Petunia axillaris HOM05D006068 ORTHO05D007579 4.0e-25 118.2 74 71.6
ECA238G2626 Erigeron canadensis HOM05D006068 ORTHO05D007579 5.2e-25 117.9 74 74.3
HanXRQChr14g0428291 Helianthus annuus HOM05D006068 ORTHO05D007579 5.2e-25 117.9 74 74.3
PGSC0003DMG400009901 Solanum tuberosum HOM05D006068 ORTHO05D007579 5.2e-25 117.9 74 71.6
Oeu056207.1 Olea europaea HOM05D006068 ORTHO05D007579 6.9e-25 117.5 74 74.3
CAN.G311.112 Capsicum annuum HOM05D006068 ORTHO05D007579 8.9e-25 117.1 74 71.6
Nitab4.5_0000588g0170 Nicotiana tabacum HOM05D006068 ORTHO05D007579 8.9e-25 117.1 74 71.6
Cc10_g00700 Coffea canephora HOM05D006068 ORTHO05D007579 1.5e-24 116.3 74 71.6
PGR031G3964 Punica granatum HOM05D006068 ORTHO05D007579 3.4e-24 115.2 74 75.7
Hund05115 Selenicereus undatus HOM05D006068 ORTHO05D007579 3.4e-24 115.2 74 74.3
Eucgr.F03551 Eucalyptus grandis HOM05D006068 ORTHO05D007579 5.8e-24 114.4 74 74.3
HPP92_025539 Vanilla planifolia HOM05D006068 ORTHO05D007579 1.3e-23 113.2 72 75.0
CDE07G1082 Ceratophyllum demersum HOM05D006068 ORTHO05D007579 4.9e-23 111.3 73 72.6
Lsat_1_v5_gn_2_6520 Lactuca sativa HOM05D006068 ORTHO05D007579 4.9e-23 111.3 75 73.3
HPP92_025498 Vanilla planifolia HOM05D006068 ORTHO05D007579 4.9e-23 111.3 72 73.6
CDE06G2200 Ceratophyllum demersum HOM05D006068 ORTHO05D007579 6.4e-23 110.9 73 75.3
SHI07998 Sapria himalayana HOM05D006068 ORTHO05D007579 1.4e-22 109.8 74 71.6
vmacro21818 Vaccinium macrocarpon HOM05D006068 ORTHO05D007579 1.9e-22 109.4 70 77.1
Zm00001eb190500 Zea mays HOM05D006068 ORTHO05D007579 5.4e-22 107.8 70 72.9
Os02g0833400 Oryza sativa ssp. japonica HOM05D006068 ORTHO05D007579 7.1e-22 107.5 73 69.9
Aa31LG9G12420 Aethionema arabicum HOM05D006068 ORTHO05D007579 7.6e-16 87.4 110 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4662 Anthoceros agrestis HOM05D006068 ORTHO05D007579 1.6e-13 79.7 73 54.8
AagrBONN_evm.TU.Sc2ySwM_117.403 Anthoceros agrestis HOM05D006068 ORTHO05D007579 2.1e-13 79.3 73 54.8
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 3.0e-12 75.5 72 50.0
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 3.0e-12 75.5 72 50.0
CBR_g12699 Chara braunii HOM05D006068 ORTHO05D007579 5.1e-12 74.7 72 52.8
Mapoly0020s0031 Marchantia polymorpha HOM05D006068 ORTHO05D007579 8.7e-12 73.9 72 52.8
Pp3c7_4160 Physcomitrium patens HOM05D006068 ORTHO05D007579 1.1e-11 73.6 71 57.7
Pp3c7_4165 Physcomitrium patens HOM05D006068 ORTHO05D007579 1.1e-11 73.6 71 57.7
Pp3c11_22560 Physcomitrium patens HOM05D006068 ORTHO05D007579 9.6e-11 70.5 71 54.9


User provided reference genes

Program Settings