Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39449 Trifolium pratense HOM05D000973 ORTHO05D000652 8.3e-43 176.8 99 100.0
Psat2g022400 Pisum sativum HOM05D000973 ORTHO05D000652 3.8e-32 141.4 102 80.4
Medtr5g087760 Medicago truncatula HOM05D000973 ORTHO05D000652 1.6e-30 136.0 99 73.7
VMungo0647G0865 Vigna mungo HOM05D000973 ORTHO05D000652 5.9e-25 117.5 109 67.9
Glyma.02G274400 Glycine max HOM05D000973 ORTHO05D000652 7.8e-25 117.1 109 62.4
Phvul.008G207300 Phaseolus vulgaris HOM05D000973 ORTHO05D000652 1.0e-24 116.7 109 61.5
Glyma.14G041700 Glycine max HOM05D000973 ORTHO05D000652 3.1e-21 105.1 109 62.4
Cfa010260 Carpinus fangiana HOM05D000973 ORTHO05D000652 2.0e-20 102.4 106 51.9
Nn1g01999 Nelumbo nucifera HOM05D000973 ORTHO05D000652 2.0e-20 102.4 107 57.0
Manes.11G112400 Manihot esculenta HOM05D000973 ORTHO05D000652 3.4e-20 101.7 112 55.4
arahy.Tifrunner.gnm1.ann1.Q07BGG Arachis hypogaea HOM05D000973 ORTHO05D000652 5.8e-20 100.9 115 59.1
CANSAT54G0667 Cannabis sativa HOM05D000973 ORTHO05D000652 9.8e-20 100.1 104 51.9
Haze_23672 Corylus avellana HOM05D000973 ORTHO05D000652 1.3e-19 99.8 106 50.0
TAR633G1053 Trochodendron aralioides HOM05D000973 ORTHO05D000652 1.7e-19 99.4 107 51.4
TAR544G0003 Trochodendron aralioides HOM05D000973 ORTHO05D000652 2.2e-19 99.0 107 50.5
Ca_06155_v3 Cicer arietinum L. HOM05D000973 ORTHO05D000652 4.9e-19 97.8 112 55.4
Ca_29851_v3 Cicer arietinum L. HOM05D000973 ORTHO05D000652 4.9e-19 97.8 112 55.4
Actinidia24496 Actinidia chinensis HOM05D000973 ORTHO05D000652 8.3e-19 97.1 99 52.5
Actinidia37187 Actinidia chinensis HOM05D000973 ORTHO05D000652 8.3e-19 97.1 99 52.5
Medtr3g078800 Medicago truncatula HOM05D000973 ORTHO05D000652 1.4e-18 96.3 99 56.6
Duzib150G0577 Durio zibethinus HOM05D000973 ORTHO05D000652 2.4e-18 95.5 100 54.0
Hma1.2p1_0218F.1_g092660 Hydrangea macrophylla HOM05D000973 ORTHO05D000652 2.4e-18 95.5 105 49.5
CiPaw.13G120600 Carya illinoinensis HOM05D000973 ORTHO05D000652 7.0e-18 94.0 108 50.0
Manes.04G052400 Manihot esculenta HOM05D000973 ORTHO05D000652 7.0e-18 94.0 116 48.3
CiPaw.14G091400 Carya illinoinensis HOM05D000973 ORTHO05D000652 2.0e-17 92.4 108 48.1
ClCG03G014140 Citrullus lanatus HOM05D000973 ORTHO05D000652 2.0e-17 92.4 100 53.0
Potri.004G197600 Populus trichocarpa HOM05D000973 ORTHO05D000652 4.6e-17 91.3 112 50.9
Lalb_Chr04g0249711 Lupinus albus HOM05D000973 ORTHO05D000652 7.8e-17 90.5 104 54.8
AT2G27080 Arabidopsis thaliana HOM05D000973 ORTHO05D000652 3.0e-16 88.6 99 49.5
QL01p020240 Quercus lobata HOM05D000973 ORTHO05D000652 3.0e-16 88.6 115 47.8
GSVIVG01037448001 Vitis vinifera HOM05D000973 ORTHO05D000652 3.9e-16 88.2 105 53.3
AL4G20640 Arabidopsis lyrata HOM05D000973 ORTHO05D000652 8.6e-16 87.0 99 50.5
Gohir.A05G101400 Gossypium hirsutum HOM05D000973 ORTHO05D000652 1.1e-15 86.7 67 62.7
LjContig00564g0001721 Lotus japonicus HOM05D000973 ORTHO05D000652 1.9e-15 85.9 73 61.6
Gohir.D03G133300 Gossypium hirsutum HOM05D000973 ORTHO05D000652 2.5e-15 85.5 68 63.2
Gorai.003G140400 Gossypium raimondii HOM05D000973 ORTHO05D000652 2.5e-15 85.5 68 63.2
Gohir.D05G101200 Gossypium hirsutum HOM05D000973 ORTHO05D000652 3.3e-15 85.1 67 62.7
Nitab4.5_0004699g0040 Nicotiana tabacum HOM05D000973 ORTHO05D000652 3.3e-15 85.1 108 50.9
Cpa.g.sc103.62 Carica papaya HOM05D000973 ORTHO05D000652 5.6e-15 84.3 103 56.3
Gohir.A03G035033 Gossypium hirsutum HOM05D000973 ORTHO05D000652 5.6e-15 84.3 68 60.3
BcaC02g08284 Brassica carinata HOM05D000973 ORTHO05D000652 7.3e-15 84.0 99 48.5
C04p56350 Brassica napus HOM05D000973 ORTHO05D000652 7.3e-15 84.0 99 48.5
BolC4t27165H Brassica oleracea HOM05D000973 ORTHO05D000652 7.3e-15 84.0 99 48.5
Nitab4.5_0003585g0030 Nicotiana tabacum HOM05D000973 ORTHO05D000652 7.3e-15 84.0 108 50.0
Eucgr.J00628 Eucalyptus grandis HOM05D000973 ORTHO05D000652 9.5e-15 83.6 109 45.9
CSS0043006 Camellia sinensis var. sinensis HOM05D000973 ORTHO05D000652 1.2e-14 83.2 110 47.3
RcHm_v2.0_Chr5g0049981 Rosa chinensis HOM05D000973 ORTHO05D000652 1.2e-14 83.2 99 47.5
CARHR119400 Cardamine hirsuta HOM05D000973 ORTHO05D000652 2.1e-14 82.4 99 47.5
Gorai.009G105300 Gossypium raimondii HOM05D000973 ORTHO05D000652 2.8e-14 82.0 67 61.2
Dinv10735 Davidia involucrata HOM05D000973 ORTHO05D000652 3.6e-14 81.6 112 47.3
Lj6g0015434 Lotus japonicus HOM05D000973 ORTHO05D000652 3.6e-14 81.6 67 62.7
THA.LOC104826475 Tarenaya hassleriana HOM05D000973 ORTHO05D000652 3.6e-14 81.6 102 49.0
Cfa001667 Carpinus fangiana HOM05D000225 ORTHO05D002604 4.7e-14 81.3 78 52.6
TWI31G0389 Tripterygium wilfordii HOM05D000973 ORTHO05D000652 4.7e-14 81.3 107 47.7
Cfa013249 Carpinus fangiana HOM05D000973 ORTHO05D000652 6.2e-14 80.9 78 52.6
Potri.009G158900 Populus trichocarpa HOM05D000973 ORTHO05D000652 6.2e-14 80.9 120 45.8
Prupe.6G155500 Prunus persica HOM05D000973 ORTHO05D000652 6.2e-14 80.9 101 50.5
Carub.0004s0757 Capsella rubella HOM05D000973 ORTHO05D000652 8.1e-14 80.5 99 45.5
Sp4g09710 Schrenkiella parvula HOM05D000973 ORTHO05D000652 8.1e-14 80.5 99 47.5
SpUn0012_0120 Schrenkiella parvula HOM05D000973 ORTHO05D000652 8.1e-14 80.5 99 47.5
SpUn0100_0010 Schrenkiella parvula HOM05D000973 ORTHO05D000652 8.1e-14 80.5 99 47.5
SpUn0518_0010 Schrenkiella parvula HOM05D000973 ORTHO05D000652 8.1e-14 80.5 99 47.5
THA.LOC104800491 Tarenaya hassleriana HOM05D000973 ORTHO05D000652 8.1e-14 80.5 102 48.0
A04p20570 Brassica napus HOM05D000973 ORTHO05D000652 1.1e-13 80.1 99 47.5
BraA04t17632Z Brassica rapa HOM05D000973 ORTHO05D000652 1.1e-13 80.1 99 47.5
Nitab4.5_0012011g0020 Nicotiana tabacum HOM05D000973 ORTHO05D000652 2.3e-13 79.0 109 40.4
TAR636G1424 Trochodendron aralioides HOM05D000973 ORTHO05D000652 3.1e-13 78.6 101 46.5
CDE08G0759 Ceratophyllum demersum HOM05D002649 ORTHO05D002838 4.0e-13 78.2 93 49.5
Thecc.09G337700 Theobroma cacao HOM05D000973 ORTHO05D000652 4.0e-13 78.2 64 62.5
Thhalv10002079m.g Eutrema salsugineum HOM05D000973 ORTHO05D000652 1.2e-12 76.6 99 47.5
BcaB06g28110 Brassica carinata HOM05D000973 ORTHO05D000652 1.5e-12 76.3 100 47.0
COL.COLO4_18364 Corchorus olitorius HOM05D000973 ORTHO05D000652 1.5e-12 76.3 66 62.1
Lalb_Chr17g0347501 Lupinus albus HOM05D000973 ORTHO05D000652 2.0e-12 75.9 102 50.0
Sopen01g004630 Solanum pennellii HOM05D000973 ORTHO05D000652 2.0e-12 75.9 110 41.8
Duzib168G1867 Durio zibethinus HOM05D000973 ORTHO05D000652 4.4e-12 74.7 67 56.7
CAN.G864.5 Capsicum annuum HOM05D000973 ORTHO05D000652 5.8e-12 74.3 110 43.6
CDE02G1193 Ceratophyllum demersum HOM05D000033 ORTHO05D001614 7.5e-12 73.9 102 42.2
Rhsim13G0200900 Rhododendron simsii HOM05D000973 ORTHO05D000652 7.5e-12 73.9 111 49.5
Aa31LG1G13650 Aethionema arabicum HOM05D000973 ORTHO05D000652 1.3e-11 73.2 68 50.0
PSO135G1039 Papaver somniferum HOM05D000973 ORTHO05D000652 1.3e-11 73.2 92 48.9
Ca_16222_v3 Cicer arietinum L. HOM05D000973 ORTHO05D000652 1.7e-11 72.8 99 49.5
Duzib170G0765 Durio zibethinus HOM05D000973 ORTHO05D000652 1.7e-11 72.8 66 57.6
Medtr2g012550 Medicago truncatula HOM05D000973 ORTHO05D000652 1.7e-11 72.8 101 44.6
PSO384G2924 Papaver somniferum HOM05D000973 ORTHO05D000652 1.7e-11 72.8 92 48.9
PGR119G1358 Punica granatum HOM05D000973 ORTHO05D000652 2.2e-11 72.4 102 47.1
Sed0007346 Sechium edule HOM05D000973 ORTHO05D000652 2.2e-11 72.4 99 54.5
EL10Ac9g22378 Beta vulgaris HOM05D000973 ORTHO05D000652 2.9e-11 72.0 125 39.2
A03p26770 Brassica napus HOM05D000973 ORTHO05D000652 2.9e-11 72.0 99 45.5
BraA03t11888Z Brassica rapa HOM05D000973 ORTHO05D000652 2.9e-11 72.0 99 45.5
HanXRQChr14g0459101 Helianthus annuus HOM05D000973 ORTHO05D000652 2.9e-11 72.0 99 40.4
MBI19_g28097_MAGBIO Magnolia biondii HOM05D000973 ORTHO05D000652 3.7e-11 71.6 99 44.4
Sabra04G0134000 Salix brachista HOM05D000973 ORTHO05D000652 3.7e-11 71.6 122 41.8
Sc21g0000220 Simmondsia chinensis HOM05D000973 ORTHO05D000652 6.4e-11 70.9 119 42.9
TWI75G0758 Tripterygium wilfordii HOM05D000973 ORTHO05D000652 6.4e-11 70.9 109 43.1
Solyc01g009160.2 Solanum lycopersicum HOM05D000973 ORTHO05D000652 8.3e-11 70.5 110 42.7
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 1.4e-10 69.7 118 39.8
AT5G21130 Arabidopsis thaliana HOM05D000973 ORTHO05D000652 1.9e-10 69.3 68 52.9
Psat5g112520 Pisum sativum HOM05D000973 ORTHO05D000652 1.9e-10 69.3 107 48.6
C03p32070 Brassica napus HOM05D000973 ORTHO05D000652 2.4e-10 68.9 99 45.5
BcaC01g04922 Brassica carinata HOM05D000973 ORTHO05D000652 3.2e-10 68.6 98 44.9
BolC3t15551H Brassica oleracea HOM05D000973 ORTHO05D000652 3.2e-10 68.6 98 44.9
BcaC03g13833 Brassica carinata HOM05D000973 ORTHO05D000652 4.1e-10 68.2 71 45.1
BolC2t07099H Brassica oleracea HOM05D000973 ORTHO05D000652 4.1e-10 68.2 71 45.1
Lsat_1_v5_gn_2_34600 Lactuca sativa HOM05D000973 ORTHO05D000652 4.1e-10 68.2 103 42.7
BcaB01g03045 Brassica carinata HOM05D000973 ORTHO05D000652 7.1e-10 67.4 99 44.4
Ah.01g014790 Amaranthus hybridus HOM05D000973 ORTHO05D000652 9.2e-10 67.0 127 34.6
AL6G32740 Arabidopsis lyrata HOM05D000973 ORTHO05D000652 9.2e-10 67.0 78 48.7
AUR62037166 Chenopodium quinoa HOM05D000973 ORTHO05D000652 9.2e-10 67.0 128 36.7
AUR62037168 Chenopodium quinoa HOM05D000973 ORTHO05D000652 9.2e-10 67.0 128 36.7
PGR102G3040 Punica granatum HOM05D000973 ORTHO05D000652 9.2e-10 67.0 64 59.4
MD00G1106600 Malus domestica HOM05D000973 ORTHO05D000652 1.6e-09 66.2 111 43.2
Peaxi162Scf00342g00033 Petunia axillaris HOM05D000973 ORTHO05D000652 1.6e-09 66.2 99 40.4
PGSC0003DMG400008711 Solanum tuberosum HOM05D000973 ORTHO05D000652 1.6e-09 66.2 109 45.0
BcaB05g22771 Brassica carinata HOM05D000973 ORTHO05D000652 2.1e-09 65.9 68 45.6
MELO3C015630.2 Cucumis melo HOM05D000973 ORTHO05D000652 2.7e-09 65.5 101 47.5
PGSC0003DMG400002014 Solanum tuberosum HOM05D000973 ORTHO05D000652 2.7e-09 65.5 111 40.5
Cc01_g07530 Coffea canephora HOM05D000973 ORTHO05D000652 3.5e-09 65.1 76 44.7
PSO339G0708 Papaver somniferum HOM05D000973 ORTHO05D000652 3.5e-09 65.1 76 46.1
AUR62025118 Chenopodium quinoa HOM05D000973 ORTHO05D000652 4.6e-09 64.7 128 35.9
PSO384G0774 Papaver somniferum HOM05D000973 ORTHO05D000652 6.0e-09 64.3 104 41.3
Sopen09g001970 Solanum pennellii HOM05D000973 ORTHO05D000652 6.0e-09 64.3 103 38.8
BraA02t05618Z Brassica rapa HOM05D000973 ORTHO05D000652 1.0e-08 63.5 77 42.9
MELO3C014705.2 Cucumis melo HOM05D000973 ORTHO05D000652 1.0e-08 63.5 99 40.4
BcaC03g13831 Brassica carinata HOM05D000973 ORTHO05D000652 1.3e-08 63.2 71 43.7
BolC2t07098H Brassica oleracea HOM05D000973 ORTHO05D000652 1.3e-08 63.2 71 43.7
ATR0307G072 Amborella trichopoda HOM05D000973 ORTHO05D000652 1.7e-08 62.8 90 43.3
BraA02t05617Z Brassica rapa HOM05D000973 ORTHO05D000652 1.7e-08 62.8 74 43.2
PSO384G3047 Papaver somniferum HOM05D000973 ORTHO05D000652 1.7e-08 62.8 90 42.2
MBI13_g15013_MAGBIO Magnolia biondii HOM05D000973 ORTHO05D000652 2.3e-08 62.4 65 56.9
TPR.G40785 Trifolium pratense HOM05D000973 ORTHO05D000652 3.0e-08 62.0 104 45.2
Eucgr.B03782 Eucalyptus grandis HOM05D000973 ORTHO05D000652 3.9e-08 61.6 67 55.2
BcaC01g06620 Brassica carinata HOM05D000973 ORTHO05D000652 5.1e-08 61.2 68 42.6
BNapus_Darmor_BZH_scaffold_38p01130 Brassica napus HOM05D000973 ORTHO05D000652 5.1e-08 61.2 74 43.2
C02p10650 Brassica napus HOM05D000973 ORTHO05D000652 5.1e-08 61.2 74 43.2
C03p11990 Brassica napus HOM05D000973 ORTHO05D000652 5.1e-08 61.2 68 42.6
BolC3t13670H Brassica oleracea HOM05D000973 ORTHO05D000652 5.1e-08 61.2 68 42.6
Lj2P930T13 Lonicera japonica HOM05D000973 ORTHO05D000652 8.6e-08 60.5 87 37.9
Zm00001eb150110 Zea mays HOM05D000973 ORTHO05D000652 8.6e-08 60.5 76 48.7
Sed0026403 Sechium edule HOM05D000234 ORTHO05D001258 1.1e-07 60.1 100 44.0
ClCG02G024220 Citrullus lanatus HOM05D000234 ORTHO05D001258 1.5e-07 59.7 102 40.2
CARHR191740 Cardamine hirsuta HOM05D000973 ORTHO05D000652 2.5e-07 58.9 97 39.2
Aa31LG5G8460 Aethionema arabicum HOM05D000973 ORTHO05D000652 4.3e-07 58.2 102 45.1
THA.LOC104799584 Tarenaya hassleriana HOM05D000973 ORTHO05D000652 7.3e-07 57.4 69 46.4
Carub.0006s1944 Capsella rubella HOM05D000973 ORTHO05D000652 9.5e-07 57.0 91 39.6
Oeu032074.1 Olea europaea HOM05D000973 ORTHO05D000652 9.5e-07 57.0 101 37.6
Phvul.L001637 Phaseolus vulgaris HOM05D000973 ORTHO05D000652 9.5e-07 57.0 99 41.4
SalBow6G0709 Salvia bowleyana HOM05D000973 ORTHO05D000652 1.2e-06 56.6 106 37.7
MD00G1119400 Malus domestica HOM05D000973 ORTHO05D000652 2.8e-06 55.5 108 37.0
Os01g0812100 Oryza sativa ssp. japonica HOM05D000973 ORTHO05D000652 3.6e-06 55.1 72 41.7
TAR381G1313 Trochodendron aralioides HOM05D000973 ORTHO05D000652 4.7e-06 54.7 77 40.3
Peaxi162Scf00207g00511 Petunia axillaris HOM05D000973 ORTHO05D000652 6.2e-06 54.3 104 40.4
FAN16G2808 Fragaria x ananassa HOM05D000973 ORTHO05D000652 8.1e-06 53.9 74 41.9


User provided reference genes

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