Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39440 Trifolium pratense HOM05D001170 ORTHO05D008741 2.0e-60 235.7 131 100.0
TPR.G34421 Trifolium pratense HOM05D001170 ORTHO05D008741 1.1e-53 213.4 132 85.6
Psat7g244840 Pisum sativum HOM05D000073 ORTHO05D000033 6.8e-45 184.1 130 73.1
Medtr4g016930 Medicago truncatula HOM05D001170 ORTHO05D008741 2.0e-44 182.6 130 72.3
Ca_20220_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 4.9e-43 177.9 129 76.7
Lj3g0006921 Lotus japonicus HOM05D001170 ORTHO05D008741 3.4e-36 155.2 129 65.1
Lalb_Chr07g0192391 Lupinus albus HOM05D001170 ORTHO05D008741 7.1e-34 147.5 129 62.0
Glyma.03G056300 Glycine max HOM05D001170 ORTHO05D008741 3.5e-33 145.2 129 61.2
VMungo0331G0578 Vigna mungo HOM05D001170 ORTHO05D008741 2.3e-32 142.5 125 61.6
Phvul.010G075900 Phaseolus vulgaris HOM05D001170 ORTHO05D008741 1.5e-31 139.8 125 60.8
Glyma.01G119900 Glycine max HOM05D001170 ORTHO05D008741 2.5e-31 139.0 131 59.5
arahy.Tifrunner.gnm1.ann1.FN1A8Q Arachis hypogaea HOM05D001170 ORTHO05D008741 3.6e-30 135.2 133 61.7
arahy.Tifrunner.gnm1.ann1.S2R1T1 Arachis hypogaea HOM05D001170 ORTHO05D008741 1.2e-28 130.2 126 60.3
Prupe.6G279600 Prunus persica HOM05D001170 ORTHO05D008741 5.1e-24 114.8 129 52.7
FAN02G4623 Fragaria x ananassa HOM05D001170 ORTHO05D008741 4.8e-22 108.2 129 51.9
FAN09G0318 Fragaria x ananassa HOM05D001170 ORTHO05D008741 6.2e-22 107.8 128 51.6
RcHm_v2.0_Chr3g0462751 Rosa chinensis HOM05D001170 ORTHO05D008741 1.1e-21 107.1 129 51.9
FvH4_6g11240 Fragaria vesca HOM05D001170 ORTHO05D008741 1.2e-20 103.6 129 50.4
FAN14G2338 Fragaria x ananassa HOM05D001170 ORTHO05D008741 1.2e-20 103.6 129 50.4
FAN14G4496 Fragaria x ananassa HOM05D001170 ORTHO05D008741 1.2e-20 103.6 129 50.4
CSS0009561 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D008741 1.5e-20 103.2 134 48.5
Haze_20986 Corylus avellana HOM05D001170 ORTHO05D008741 2.0e-20 102.8 133 49.6
Duzib093G1404 Durio zibethinus HOM05D001170 ORTHO05D008741 4.5e-20 101.7 127 48.0
Thecc.05G013600 Theobroma cacao HOM05D001170 ORTHO05D008741 7.6e-20 100.9 124 46.8
TAR623G1719 Trochodendron aralioides HOM05D001594 ORTHO05D002862 7.6e-20 100.9 126 52.4
Cfa017188 Carpinus fangiana HOM05D001170 ORTHO05D008741 1.3e-19 100.1 130 51.5
Gohir.D09G161700 Gossypium hirsutum HOM05D001170 ORTHO05D008741 1.7e-19 99.8 127 48.0
COL.COLO4_14511 Corchorus olitorius HOM05D001343 ORTHO05D002008 2.9e-19 99.0 133 50.4
CiPaw.09G210900 Carya illinoinensis HOM05D001170 ORTHO05D008741 3.8e-19 98.6 131 47.3
Sabra16G0115100 Salix brachista HOM05D001170 ORTHO05D008741 6.5e-19 97.8 133 48.1
Atru.chr8.2265 Acer truncatum HOM05D001170 ORTHO05D008741 8.4e-19 97.4 118 50.8
Gohir.A09G166100 Gossypium hirsutum HOM05D001170 ORTHO05D008741 1.1e-18 97.1 127 47.2
Gorai.006G183400 Gossypium raimondii HOM05D001170 ORTHO05D008741 1.4e-18 96.7 127 47.2
GSVIVG01011178001 Vitis vinifera HOM05D001170 ORTHO05D008741 1.4e-18 96.7 131 46.6
TWI74G0526 Tripterygium wilfordii HOM05D001170 ORTHO05D008741 2.5e-18 95.9 132 47.0
vmacro08884 Vaccinium macrocarpon HOM05D001170 ORTHO05D008741 3.2e-18 95.5 138 49.3
CANSAT35G0043 Cannabis sativa HOM05D001170 ORTHO05D008741 7.1e-18 94.4 133 46.6
Dinv09288 Davidia involucrata HOM05D001170 ORTHO05D008741 7.1e-18 94.4 129 46.5
Actinidia05360 Actinidia chinensis HOM05D001170 ORTHO05D008741 1.6e-17 93.2 133 47.4
Lj2A72T46 Lonicera japonica HOM05D001170 ORTHO05D008741 2.1e-17 92.8 136 48.5
Ciclev10012321m.g Citrus clementina HOM05D001170 ORTHO05D008741 3.5e-17 92.0 132 46.2
Hma1.2p1_0362F.1_g136420 Hydrangea macrophylla HOM05D001170 ORTHO05D008741 1.0e-16 90.5 115 47.0
Potri.016G119200 Populus trichocarpa HOM05D001170 ORTHO05D008741 1.0e-16 90.5 132 46.2
QL07p035137 Quercus lobata HOM05D001170 ORTHO05D008741 1.0e-16 90.5 134 50.0
Sp4g20550 Schrenkiella parvula HOM05D001170 ORTHO05D008741 2.3e-16 89.4 136 44.9
A03p21110 Brassica napus HOM05D001170 ORTHO05D008741 5.1e-16 88.2 100 54.0
BraA03t11352Z Brassica rapa HOM05D001170 ORTHO05D008741 5.1e-16 88.2 108 49.1
DCAR_018690 Daucus carota HOM05D001170 ORTHO05D008741 5.1e-16 88.2 134 45.5
Cpa.g.sc11.97 Carica papaya HOM05D001170 ORTHO05D008741 6.7e-16 87.8 132 38.6
ECA236G0793 Erigeron canadensis HOM05D001170 ORTHO05D008741 8.7e-16 87.4 130 43.1
AL4G35350 Arabidopsis lyrata HOM05D001170 ORTHO05D008741 1.5e-15 86.7 114 48.2
Manes.08G093600 Manihot esculenta HOM05D001170 ORTHO05D008741 1.5e-15 86.7 134 41.8
AL4G35310 Arabidopsis lyrata HOM05D001170 ORTHO05D008741 2.5e-15 85.9 109 49.5
AT2G38270 Arabidopsis thaliana HOM05D001170 ORTHO05D008741 2.5e-15 85.9 106 49.1
BcaB01g03712 Brassica carinata HOM05D001170 ORTHO05D008741 2.5e-15 85.9 108 47.2
AUR62030807 Chenopodium quinoa HOM05D001170 ORTHO05D008741 2.5e-15 85.9 83 51.8
Migut.L02023 Erythranthe guttata HOM05D001170 ORTHO05D008741 5.7e-15 84.7 127 44.1
BcaC01g05553 Brassica carinata HOM05D001170 ORTHO05D008741 7.4e-15 84.3 108 49.1
C03p25000 Brassica napus HOM05D001170 ORTHO05D008741 7.4e-15 84.3 108 49.1
BolC3t14891H Brassica oleracea HOM05D001170 ORTHO05D008741 7.4e-15 84.3 108 49.1
AUR62030484 Chenopodium quinoa HOM05D001170 ORTHO05D008741 7.4e-15 84.3 109 42.2
Aqoxy4G02521 Aquilegia oxysepala HOM05D001170 ORTHO05D008741 9.6e-15 84.0 131 42.7
Oeu063396.1 Olea europaea HOM05D001170 ORTHO05D008741 9.6e-15 84.0 113 43.4
THA.LOC104805920 Tarenaya hassleriana HOM05D001170 ORTHO05D008741 1.6e-14 83.2 128 44.5
Thhalv10017037m.g Eutrema salsugineum HOM05D001170 ORTHO05D008741 2.8e-14 82.4 109 49.5
CARHR132850 Cardamine hirsuta HOM05D001170 ORTHO05D008741 3.7e-14 82.0 108 48.1
HanXRQChr11g0331711 Helianthus annuus HOM05D001170 ORTHO05D008741 4.8e-14 81.6 127 42.5
SalBow5G4502 Salvia bowleyana HOM05D001170 ORTHO05D008741 4.8e-14 81.6 127 41.7
Hund10990 Selenicereus undatus HOM05D001170 ORTHO05D008741 4.8e-14 81.6 96 45.8
PGSC0003DMG400004454 Solanum tuberosum HOM05D001170 ORTHO05D008741 6.3e-14 81.3 111 42.3
EL10Ac5g12545 Beta vulgaris HOM05D001343 ORTHO05D002008 1.4e-13 80.1 135 42.2
Carub.0004s2022 Capsella rubella HOM05D001170 ORTHO05D008741 1.8e-13 79.7 108 48.1
PGR031G0399 Punica granatum HOM05D001170 ORTHO05D008741 2.4e-13 79.3 100 45.0
Solyc09g005620.4 Solanum lycopersicum HOM05D001170 ORTHO05D008741 2.4e-13 79.3 133 41.4
Lsat_1_v5_gn_8_101640 Lactuca sativa HOM05D001170 ORTHO05D008741 6.9e-13 77.8 141 37.6
Sopen00g009970 Solanum pennellii HOM05D001170 ORTHO05D008741 6.9e-13 77.8 111 41.4
ClCG10G022280 Citrullus lanatus HOM05D001170 ORTHO05D008741 9.0e-13 77.4 101 49.5
CsaV3_3G033600 Cucumis sativus L. HOM05D001170 ORTHO05D008741 9.0e-13 77.4 117 43.6
Eucgr.K02975 Eucalyptus grandis HOM05D001170 ORTHO05D008741 9.0e-13 77.4 132 39.4
PSO339G6149 Papaver somniferum HOM05D001170 ORTHO05D008741 9.0e-13 77.4 120 40.8
CAN.G133.10 Capsicum annuum HOM05D001170 ORTHO05D008741 1.2e-12 77.0 95 40.0
Sopen09g001520 Solanum pennellii HOM05D001170 ORTHO05D008741 1.2e-12 77.0 132 40.9
MSTRG.18998 Avicennia marina HOM05D001170 ORTHO05D008741 2.6e-12 75.9 131 42.7
MELO3C009150.2 Cucumis melo HOM05D001170 ORTHO05D008741 4.5e-12 75.1 121 43.8
Nn2g10877 Nelumbo nucifera HOM05D001170 ORTHO05D008741 4.5e-12 75.1 131 40.5
PSO384G1831 Papaver somniferum HOM05D001170 ORTHO05D008741 4.5e-12 75.1 120 40.8
Aa31LG5G23190 Aethionema arabicum HOM05D001170 ORTHO05D008741 5.9e-12 74.7 133 43.6
Peaxi162Scf00170g00120 Petunia axillaris HOM05D001170 ORTHO05D008741 5.9e-12 74.7 132 40.9
unitig_26.g9085 Utricularia gibba HOM05D001170 ORTHO05D008741 5.9e-12 74.7 120 42.5
Cc06_g01160 Coffea canephora HOM05D001170 ORTHO05D008741 1.3e-11 73.6 114 40.4
Sc01g0006910 Simmondsia chinensis HOM05D001170 ORTHO05D008741 1.3e-11 73.6 104 45.2
Sed0014265 Sechium edule HOM05D001170 ORTHO05D008741 2.9e-11 72.4 72 54.2
Cre01.g047800 Chlamydomonas reinhardtii HOM05D001170 ORTHO05D008741 6.5e-11 71.2 89 46.1
SEGI_27167 Sequoiadendron giganteum HOM05D001170 ORTHO05D008741 6.5e-11 71.2 138 39.1
MBI15_g13301_MAGBIO Magnolia biondii HOM05D001170 ORTHO05D008741 8.4e-11 70.9 126 38.9
Nitab4.5_0000261g0040 Nicotiana tabacum HOM05D001170 ORTHO05D008741 1.1e-10 70.5 105 41.0
Rhsim04G0126900 Rhododendron simsii HOM05D001170 ORTHO05D008741 4.2e-10 68.6 71 50.7
SMO196G0158 Selaginella moellendorffii HOM05D001170 ORTHO05D008741 5.5e-10 68.2 70 45.7
ATR0681G276 Amborella trichopoda HOM05D001170 ORTHO05D008741 7.2e-10 67.8 92 41.3
AagrBONN_evm.TU.Sc2ySwM_362.2023 Anthoceros agrestis HOM05D001170 ORTHO05D008741 4.6e-09 65.1 75 44.0
Os12g0175500 Oryza sativa ssp. japonica HOM05D001170 ORTHO05D008741 7.9e-09 64.3 105 39.0
HPP92_019010 Vanilla planifolia HOM05D001170 ORTHO05D008741 7.9e-09 64.3 40 67.5
Nitab4.5_0013095g0010 Nicotiana tabacum HOM05D001170 ORTHO05D008741 2.3e-08 62.8 98 40.8
CDE06G1991 Ceratophyllum demersum HOM05D001170 ORTHO05D008741 3.9e-08 62.0 135 37.0
Pp3c14_14790 Physcomitrium patens HOM05D001170 ORTHO05D008741 1.5e-07 60.1 70 40.0
Mapoly0001s0103 Marchantia polymorpha HOM05D001170 ORTHO05D008741 1.9e-07 59.7 65 40.0
Zm00001eb163210 Zea mays HOM05D001170 ORTHO05D008741 1.6e-06 56.6 41 63.4
Zm00001eb094310 Zea mays HOM05D001170 ORTHO05D008741 2.2e-06 56.2 41 61.0
SalBow7G0113 Salvia bowleyana HOM05D001170 ORTHO05D008741 3.7e-06 55.5 64 39.1


User provided reference genes

Program Settings