Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39366 Trifolium pratense HOM05D000588 ORTHO05D004275 2.4e-75 285.4 142 100.0
TPR.G18416 Trifolium pratense HOM05D000588 ORTHO05D004275 8.0e-31 137.5 138 48.6
TPR.G15642 Trifolium pratense HOM05D000588 ORTHO05D004275 5.2e-30 134.8 118 50.8
Medtr2g018340 Medicago truncatula HOM05D000588 ORTHO05D004275 1.9e-24 116.3 125 48.0
TPR.G22191 Trifolium pratense HOM05D000588 ORTHO05D004275 8.8e-22 107.5 135 41.5
Medtr2g018380 Medicago truncatula HOM05D000588 ORTHO05D004275 3.1e-19 99.0 124 38.7
Medtr2g437700 Medicago truncatula HOM05D000588 ORTHO05D004275 2.6e-13 79.3 118 39.0
TPR.G30928 Trifolium pratense HOM05D000588 ORTHO05D004275 4.4e-13 78.6 132 37.9
Psat1g151360 Pisum sativum HOM05D000588 ORTHO05D004275 7.5e-13 77.8 118 38.1
Cfa011497 Carpinus fangiana HOM05D000588 ORTHO05D004275 4.9e-12 75.1 132 35.6
CiPaw.13G094900 Carya illinoinensis HOM05D000588 ORTHO05D004275 4.9e-12 75.1 138 37.0
Haze_24091 Corylus avellana HOM05D000588 ORTHO05D004275 8.3e-12 74.3 136 36.0
Lj1P154T18 Lonicera japonica HOM05D000588 ORTHO05D004275 2.4e-11 72.8 116 37.1
Lalb_Chr15g0083661 Lupinus albus HOM05D000588 ORTHO05D004275 2.4e-11 72.8 116 37.9
Ca_02403_v3 Cicer arietinum L. HOM05D000588 ORTHO05D004275 3.1e-11 72.4 116 35.3
Lj2A1062T47 Lonicera japonica HOM05D000588 ORTHO05D004275 3.1e-11 72.4 116 36.2
Lalb_Chr20g0114361 Lupinus albus HOM05D000588 ORTHO05D004275 3.1e-11 72.4 116 38.8
TPR.G22197 Trifolium pratense HOM05D000588 ORTHO05D004275 3.1e-11 72.4 121 37.2
CSS0007929 Camellia sinensis var. sinensis HOM05D000588 ORTHO05D004275 4.1e-11 72.0 116 37.9
CiPaw.14G068600 Carya illinoinensis HOM05D000588 ORTHO05D004275 5.4e-11 71.6 116 38.8
ClCG03G001570 Citrullus lanatus HOM05D000588 ORTHO05D004275 7.0e-11 71.2 116 37.9
Actinidia37205 Actinidia chinensis HOM05D000588 ORTHO05D004275 9.2e-11 70.9 116 36.2
Eucgr.B02370 Eucalyptus grandis HOM05D000588 ORTHO05D004275 9.2e-11 70.9 133 36.8
Lsat_1_v5_gn_9_23341 Lactuca sativa HOM05D000588 ORTHO05D004275 9.2e-11 70.9 116 38.8
Manes.04G034700 Manihot esculenta HOM05D000588 ORTHO05D004275 1.2e-10 70.5 116 36.2
Manes.11G130800 Manihot esculenta HOM05D000588 ORTHO05D004275 1.2e-10 70.5 135 34.1
TAR633G2704 Trochodendron aralioides HOM05D000588 ORTHO05D004275 1.2e-10 70.5 116 36.2
Actinidia23942 Actinidia chinensis HOM05D000588 ORTHO05D004275 1.6e-10 70.1 116 37.9
CsaV3_1G034110 Cucumis sativus L. HOM05D000588 ORTHO05D004275 1.6e-10 70.1 116 37.1
Migut.D02106 Erythranthe guttata HOM05D002226 ORTHO05D004275 1.6e-10 70.1 138 35.5
Glyma.09G048100 Glycine max HOM05D000588 ORTHO05D004275 1.6e-10 70.1 116 37.1
Glyma.15G155400 Glycine max HOM05D000588 ORTHO05D004275 1.6e-10 70.1 116 37.1
Phvul.009G244800 Phaseolus vulgaris HOM05D000588 ORTHO05D004275 1.6e-10 70.1 116 37.9
SalBow2G2620 Salvia bowleyana HOM05D000588 ORTHO05D004275 1.6e-10 70.1 115 39.1
VMungo1309G0153 Vigna mungo HOM05D000588 ORTHO05D004275 1.6e-10 70.1 116 37.9
AL5G25410 Arabidopsis lyrata HOM05D000588 ORTHO05D004275 2.0e-10 69.7 116 33.6
Cc01_g12820 Coffea canephora HOM05D000588 ORTHO05D004275 2.0e-10 69.7 115 36.5
MELO3C020643.2 Cucumis melo HOM05D000588 ORTHO05D004275 2.0e-10 69.7 116 37.1
DCAR_015624 Daucus carota HOM05D000588 ORTHO05D004275 2.0e-10 69.7 116 36.2
Migut.N02676 Erythranthe guttata HOM05D000588 ORTHO05D004275 2.0e-10 69.7 115 37.4
HanXRQChr11g0350861 Helianthus annuus HOM05D000588 ORTHO05D004275 2.0e-10 69.7 116 37.1
Lj6g0012231 Lotus japonicus HOM05D000588 ORTHO05D004275 2.0e-10 69.7 116 35.3
Rhsim01G0227300 Rhododendron simsii HOM05D000588 ORTHO05D004275 2.0e-10 69.7 116 35.3
Sed0018795 Sechium edule HOM05D000588 ORTHO05D004275 2.0e-10 69.7 116 37.1
EL10Ac7g16014 Beta vulgaris HOM05D000588 ORTHO05D004275 2.7e-10 69.3 116 37.1
Hma1.2p1_0418F.1_g149060 Hydrangea macrophylla HOM05D000588 ORTHO05D004275 2.7e-10 69.3 116 36.2
Lsat_1_v5_gn_8_73140 Lactuca sativa HOM05D000588 ORTHO05D004275 2.7e-10 69.3 116 36.2
PGR102G2795 Punica granatum HOM05D000588 ORTHO05D004275 2.7e-10 69.3 115 37.4
COL.COLO4_18502 Corchorus olitorius HOM05D000588 ORTHO05D004275 3.5e-10 68.9 116 37.9
Oeu019197.1 Olea europaea HOM05D000588 ORTHO05D004275 3.5e-10 68.9 115 39.1
QL01p032133 Quercus lobata HOM05D000588 ORTHO05D004275 3.5e-10 68.9 115 37.4
RcHm_v2.0_Chr5g0064411 Rosa chinensis HOM05D000588 ORTHO05D004275 3.5e-10 68.9 137 31.4
Ah.15g097240 Amaranthus hybridus HOM05D000588 ORTHO05D004275 4.5e-10 68.6 116 37.1
CSS0046782 Camellia sinensis var. sinensis HOM05D000588 ORTHO05D004275 4.5e-10 68.6 100 40.0
Carub.0005s1282 Capsella rubella HOM05D000588 ORTHO05D004275 4.5e-10 68.6 131 31.3
Nitab4.5_0002403g0050 Nicotiana tabacum HOM05D000588 ORTHO05D004275 4.5e-10 68.6 115 38.3
arahy.Tifrunner.gnm1.ann1.42PK2U Arachis hypogaea HOM05D000588 ORTHO05D004275 5.9e-10 68.2 116 36.2
arahy.Tifrunner.gnm1.ann1.60SBBK Arachis hypogaea HOM05D000588 ORTHO05D004275 5.9e-10 68.2 116 36.2
Cpa.g.sc1351.1 Carica papaya HOM05D000588 ORTHO05D004275 5.9e-10 68.2 116 37.9
HanXRQChr05g0134901 Helianthus annuus HOM05D000588 ORTHO05D004275 5.9e-10 68.2 116 36.2
AT3G46550 Arabidopsis thaliana HOM05D000588 ORTHO05D004275 7.8e-10 67.8 116 32.8
Ciclev10028444m.g Citrus clementina HOM05D000588 ORTHO05D004275 7.8e-10 67.8 116 37.1
Duzib170G0065 Durio zibethinus HOM05D000588 ORTHO05D004275 7.8e-10 67.8 116 37.1
Sc21g0005760 Simmondsia chinensis HOM05D000588 ORTHO05D004275 7.8e-10 67.8 131 35.9
CAN.G394.55 Capsicum annuum HOM05D000588 ORTHO05D004275 1.3e-09 67.0 115 37.4
Gorai.003G132100 Gossypium raimondii HOM05D000588 ORTHO05D004275 1.3e-09 67.0 116 37.1
Potri.018G097000 Populus trichocarpa HOM05D000588 ORTHO05D004275 1.3e-09 67.0 117 35.0
Sabra18G0084200 Salix brachista HOM05D000588 ORTHO05D004275 1.3e-09 67.0 117 35.0
Nitab4.5_0003753g0010 Nicotiana tabacum HOM05D000588 ORTHO05D004275 1.7e-09 66.6 115 37.4
Nitab4.5_0006166g0020 Nicotiana tabacum HOM05D000588 ORTHO05D004275 1.7e-09 66.6 115 37.4
PGSC0003DMG400030411 Solanum tuberosum HOM05D000588 ORTHO05D004275 1.7e-09 66.6 115 36.5
TPR.G7674 Trifolium pratense HOM05D000588 ORTHO05D004275 1.7e-09 66.6 119 36.1
CAN.G1305.32 Capsicum annuum HOM05D000588 ORTHO05D004275 2.3e-09 66.2 115 34.8
ECA236G3501 Erigeron canadensis HOM05D000588 ORTHO05D004275 2.3e-09 66.2 116 35.3
Potri.006G174900 Populus trichocarpa HOM05D000588 ORTHO05D004275 2.3e-09 66.2 117 35.0
Sopen06g032520 Solanum pennellii HOM05D000588 ORTHO05D004275 2.3e-09 66.2 115 35.7
Aa31LG4G15550 Aethionema arabicum HOM05D000588 ORTHO05D004275 2.9e-09 65.9 132 31.1
BcaC01g01907 Brassica carinata HOM05D000588 ORTHO05D004275 2.9e-09 65.9 138 29.7
CDE04G3587 Ceratophyllum demersum HOM05D000588 ORTHO05D004275 2.9e-09 65.9 116 34.5
CDE07G0122 Ceratophyllum demersum HOM05D000588 ORTHO05D004275 2.9e-09 65.9 116 34.5
AUR62001791 Chenopodium quinoa HOM05D000588 ORTHO05D004275 2.9e-09 65.9 116 36.2
AUR62009579 Chenopodium quinoa HOM05D000588 ORTHO05D004275 2.9e-09 65.9 116 36.2
MD11G1109900 Malus domestica HOM05D000588 ORTHO05D004275 2.9e-09 65.9 116 34.5
Oeu054146.1 Olea europaea HOM05D000588 ORTHO05D004275 2.9e-09 65.9 116 37.1
unitig_736.g22965 Utricularia gibba HOM05D000588 ORTHO05D004275 2.9e-09 65.9 116 37.1
MSTRG.12648 Avicennia marina HOM05D000588 ORTHO05D004275 3.8e-09 65.5 115 35.7
A06p20870 Brassica napus HOM05D000588 ORTHO05D004275 3.8e-09 65.5 138 29.0
C03p70730 Brassica napus HOM05D000588 ORTHO05D004275 3.8e-09 65.5 138 29.0
BolC3t19345H Brassica oleracea HOM05D000588 ORTHO05D004275 3.8e-09 65.5 138 29.0
Gohir.D03G125900 Gossypium hirsutum HOM05D000588 ORTHO05D004275 3.8e-09 65.5 116 36.2
Nn2g10372 Nelumbo nucifera HOM05D000588 ORTHO05D004275 3.8e-09 65.5 116 34.5
Nitab4.5_0000514g0120 Nicotiana tabacum HOM05D000588 ORTHO05D004275 3.8e-09 65.5 115 37.4
unitig_90.g27565 Utricularia gibba HOM05D000588 ORTHO05D004275 3.8e-09 65.5 116 36.2
MSTRG.21200 Avicennia marina HOM05D000588 ORTHO05D004275 5.0e-09 65.1 115 34.8
CANSAT21G2213 Cannabis sativa HOM05D000588 ORTHO05D004275 5.0e-09 65.1 116 36.2
Duzib168G2354 Durio zibethinus HOM05D000588 ORTHO05D004275 5.0e-09 65.1 126 34.9
Gohir.A07G098300 Gossypium hirsutum HOM05D000588 ORTHO05D004275 5.0e-09 65.1 116 36.2
Gorai.001G110500 Gossypium raimondii HOM05D000588 ORTHO05D004275 5.0e-09 65.1 116 36.2
Peaxi162Scf00089g01810 Petunia axillaris HOM05D000588 ORTHO05D004275 5.0e-09 65.1 115 38.3
Prupe.6G078300 Prunus persica HOM05D000588 ORTHO05D004275 5.0e-09 65.1 116 35.3
Thecc.09G322200 Theobroma cacao HOM05D000588 ORTHO05D004275 5.0e-09 65.1 116 36.2
Aqoxy4G02917 Aquilegia oxysepala HOM05D000588 ORTHO05D004275 6.6e-09 64.7 115 32.2
Nn5g26920 Nelumbo nucifera HOM05D000588 ORTHO05D004275 6.6e-09 64.7 116 32.8
Os05g0459700 Oryza sativa ssp. japonica HOM05D000588 ORTHO05D004275 6.6e-09 64.7 130 32.3
THA.LOC104815792 Tarenaya hassleriana HOM05D000588 ORTHO05D004275 6.6e-09 64.7 116 34.5
Atru.chr3.3897 Acer truncatum HOM05D000588 ORTHO05D004275 8.6e-09 64.3 116 35.3
BcaB01g01009 Brassica carinata HOM05D000588 ORTHO05D004275 8.6e-09 64.3 138 29.0
FAN11G0300 Fragaria x ananassa HOM05D000588 ORTHO05D004275 8.6e-09 64.3 116 33.6
TPR.G25146 Trifolium pratense HOM05D000588 ORTHO05D004275 8.6e-09 64.3 57 47.4
MBI05_g22049_MAGBIO Magnolia biondii HOM05D000588 ORTHO05D004275 1.1e-08 63.9 116 33.6
THA.LOC104799443 Tarenaya hassleriana HOM05D000588 ORTHO05D004275 1.1e-08 63.9 125 30.4
Peaxi162Scf00774g00007 Petunia axillaris HOM05D000588 ORTHO05D004275 1.5e-08 63.5 117 34.2
Sp5g15140 Schrenkiella parvula HOM05D000588 ORTHO05D004275 1.5e-08 63.5 132 29.5
Solyc03g112880.1 Solanum lycopersicum HOM05D000588 ORTHO05D004275 1.5e-08 63.5 115 34.8
Sopen03g031960 Solanum pennellii HOM05D000588 ORTHO05D004275 1.5e-08 63.5 115 34.8
PGSC0003DMG400018093 Solanum tuberosum HOM05D000588 ORTHO05D004275 1.5e-08 63.5 115 34.8
BraA06t25168Z Brassica rapa HOM05D000588 ORTHO05D004275 1.9e-08 63.2 138 29.0
TAR625G0646 Trochodendron aralioides HOM05D000588 ORTHO05D004275 1.9e-08 63.2 116 33.6
Zm00001eb289670 Zea mays HOM05D000588 ORTHO05D004275 1.9e-08 63.2 116 33.6
Thhalv10002543m.g Eutrema salsugineum HOM05D000588 ORTHO05D004275 2.5e-08 62.8 132 28.8
FvH4_3g36000 Fragaria vesca HOM05D000588 ORTHO05D004275 2.5e-08 62.8 116 33.6
FAN16G3196 Fragaria x ananassa HOM05D000588 ORTHO05D004275 2.5e-08 62.8 116 33.6
FAN21G1353 Fragaria x ananassa HOM05D000588 ORTHO05D004275 2.5e-08 62.8 116 33.6
FAN25G0853 Fragaria x ananassa HOM05D000588 ORTHO05D004275 2.5e-08 62.8 116 33.6
Gohir.D07G102600 Gossypium hirsutum HOM05D000588 ORTHO05D004275 2.5e-08 62.8 116 35.3
TPR.G39714 Trifolium pratense HOM05D000588 ORTHO05D004275 2.5e-08 62.8 140 27.9
Os01g0841100 Oryza sativa ssp. japonica HOM05D000588 ORTHO05D004275 3.3e-08 62.4 116 33.6
TAR623G0371 Trochodendron aralioides HOM05D000588 ORTHO05D004275 3.3e-08 62.4 116 32.8
SGA_v2.0_scaffold203G41509 Striga asiatica HOM05D000588 ORTHO05D004275 4.3e-08 62.0 115 33.0
TWI79G0909 Tripterygium wilfordii HOM05D000588 ORTHO05D004275 5.6e-08 61.6 116 33.6
Zm00001eb367960 Zea mays HOM05D000588 ORTHO05D004275 5.6e-08 61.6 127 31.5
SalBow3G2904 Salvia bowleyana HOM05D000588 ORTHO05D004275 7.3e-08 61.2 115 35.7
TWI75G0139 Tripterygium wilfordii HOM05D000588 ORTHO05D004275 7.3e-08 61.2 116 31.0
PSO339G2986 Papaver somniferum HOM05D000588 ORTHO05D004275 9.5e-08 60.8 116 31.9
PSO384G2134 Papaver somniferum HOM05D000588 ORTHO05D004275 9.5e-08 60.8 116 31.9
TWI31G1202 Tripterygium wilfordii HOM05D000588 ORTHO05D004275 9.5e-08 60.8 116 32.8
MSTRG.18582 Avicennia marina HOM05D000588 ORTHO05D004275 2.8e-07 59.3 115 33.0
Dinv37276 Davidia involucrata HOM05D000656 ORTHO05D000871 3.6e-07 58.9 160 29.4
SHI05949 Sapria himalayana HOM05D000588 ORTHO05D004275 3.6e-07 58.9 116 31.9
Ah.08g219490 Amaranthus hybridus HOM05D000588 ORTHO05D004275 4.7e-07 58.5 116 33.6
THA.LOC104810781 Tarenaya hassleriana HOM05D000588 ORTHO05D004275 6.1e-07 58.2 127 27.6
SEGI_34657 Sequoiadendron giganteum HOM05D000588 ORTHO05D004275 8.0e-07 57.8 115 31.3
TPR.G690 Trifolium pratense HOM05D000588 ORTHO05D004275 8.0e-07 57.8 133 29.3
CARHR155250 Cardamine hirsuta HOM05D000588 ORTHO05D004275 1.0e-06 57.4 116 29.3
ATR0559G275 Amborella trichopoda HOM05D000588 ORTHO05D004275 6.8e-06 54.7 116 31.0


User provided reference genes

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