Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 1.9e-178 629.0 302 100.0
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 6.8e-165 583.9 292 95.5
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 1.0e-160 570.1 289 92.4
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 4.4e-156 554.7 286 91.6
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 3.9e-152 541.6 302 85.8
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 9.9e-148 526.9 302 84.4
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 2.2e-147 525.8 300 84.0
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.4e-146 523.1 309 82.5
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 1.9e-146 522.7 313 81.5
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 2.7e-145 518.8 298 83.6
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 6.2e-142 507.7 308 79.5
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 5.3e-141 504.6 308 78.9
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 2.6e-140 502.3 315 79.4
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 1.3e-139 500.0 300 80.0
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 2.5e-138 495.7 300 80.3
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 4.2e-138 495.0 267 84.6
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 2.7e-137 492.3 308 76.3
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 3.5e-137 491.9 302 77.8
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 7.9e-137 490.7 300 78.3
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 7.9e-137 490.7 310 78.4
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 1.0e-136 490.3 256 88.7
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 1.0e-136 490.3 302 77.8
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 1.8e-136 489.6 301 77.7
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 1.8e-136 489.6 289 79.9
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 2.3e-136 489.2 302 77.8
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 3.0e-136 488.8 261 86.6
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 3.9e-136 488.4 267 84.6
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 1.1e-135 486.9 301 78.4
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 1.1e-135 486.9 304 76.0
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 2.5e-135 485.7 267 83.5
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 4.3e-135 485.0 261 85.1
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 9.6e-135 483.8 299 76.9
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 9.6e-135 483.8 306 75.8
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 1.6e-134 483.0 300 76.3
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 2.1e-134 482.6 268 81.7
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 2.8e-134 482.3 303 76.2
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 3.7e-134 481.9 288 77.8
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 6.2e-134 481.1 301 75.7
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 6.2e-134 481.1 301 75.7
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 8.2e-134 480.7 299 77.3
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 1.4e-133 479.9 308 76.0
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.8e-133 479.6 301 75.4
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 1.8e-133 479.6 271 83.4
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 2.4e-133 479.2 300 76.0
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.4e-133 479.2 304 75.3
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 2.4e-133 479.2 301 76.1
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 3.1e-133 478.8 268 80.6
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 3.1e-133 478.8 295 75.9
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 5.3e-133 478.0 302 75.8
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 5.3e-133 478.0 302 76.8
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 5.3e-133 478.0 300 76.7
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 5.3e-133 478.0 271 83.0
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 5.3e-133 478.0 299 75.6
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 9.0e-133 477.2 298 75.8
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 2.0e-132 476.1 307 75.2
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 2.0e-132 476.1 278 79.5
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 4.5e-132 474.9 300 74.3
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.5e-132 474.9 295 75.9
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.5e-132 474.9 302 74.8
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 5.8e-132 474.6 295 76.3
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 5.8e-132 474.6 300 73.7
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 7.6e-132 474.2 261 84.7
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 7.6e-132 474.2 300 74.3
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 1.0e-131 473.8 300 74.0
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 1.3e-131 473.4 261 83.1
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 1.7e-131 473.0 261 82.8
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 2.2e-131 472.6 300 74.0
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 2.2e-131 472.6 301 74.4
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 2.9e-131 472.2 259 83.8
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 3.8e-131 471.9 300 73.7
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 3.8e-131 471.9 259 83.4
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 3.8e-131 471.9 300 73.3
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 5.0e-131 471.5 300 73.7
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 6.5e-131 471.1 299 74.9
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 6.5e-131 471.1 259 83.8
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 6.5e-131 471.1 259 83.4
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 1.4e-130 469.9 302 73.8
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 1.9e-130 469.5 265 82.3
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 2.5e-130 469.2 278 79.1
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.2e-130 468.4 261 82.0
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 5.5e-130 468.0 302 75.5
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 1.2e-129 466.8 299 73.2
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 2.7e-129 465.7 277 78.7
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 7.9e-129 464.2 306 72.9
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 1.0e-128 463.8 263 81.7
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 2.3e-128 462.6 300 74.0
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 2.3e-128 462.6 300 74.0
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 2.3e-128 462.6 307 72.0
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 2.3e-128 462.6 260 80.4
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 5.1e-128 461.5 300 73.7
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 6.7e-128 461.1 298 73.8
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 1.1e-127 460.3 283 75.3
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 1.9e-127 459.5 300 72.7
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.9e-127 459.5 300 73.0
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 2.5e-127 459.1 289 77.2
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 3.3e-127 458.8 300 73.3
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 3.3e-127 458.8 300 73.3
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 9.7e-127 457.2 301 71.1
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 1.3e-126 456.8 302 74.2
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 1.3e-126 456.8 240 87.5
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 1.3e-126 456.8 299 72.9
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 1.6e-126 456.4 299 72.6
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 8.2e-126 454.1 305 72.1
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 1.1e-125 453.8 293 72.0
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 1.1e-125 453.8 296 73.0
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 4.1e-125 451.8 296 73.0
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 9.0e-125 450.7 300 71.7
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 9.0e-125 450.7 240 85.8
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 2.6e-124 449.1 271 77.9
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 3.4e-124 448.7 296 72.0
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 5.9e-124 448.0 219 94.5
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 3.8e-123 445.3 276 75.7
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 8.5e-123 444.1 304 70.7
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 1.1e-122 443.7 304 70.7
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 4.2e-122 441.8 293 72.0
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 9.4e-122 440.7 233 87.6
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 2.3e-120 436.0 263 77.6
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 3.3e-119 432.2 310 70.0
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 1.4e-114 416.8 245 82.0
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 1.9e-114 416.4 270 73.3
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 3.2e-114 415.6 216 87.5
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 9.4e-114 414.1 217 85.7
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 1.2e-113 413.7 268 73.1
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 4.7e-113 411.8 256 71.5
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 1.0e-112 410.6 219 84.5
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 1.8e-112 409.8 217 85.7
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 2.8e-110 402.5 221 85.1
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 5.9e-108 394.8 264 72.0
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.9e-106 389.8 264 69.7
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 5.5e-106 388.3 208 85.1
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 5.5e-106 388.3 305 64.6
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 1.7e-99 366.7 217 76.5
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 2.3e-96 356.3 247 69.6
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 8.3e-94 347.8 269 59.9
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 6.5e-91 338.2 306 55.9
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 8.0e-81 304.7 233 61.4
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.3e-78 297.4 228 66.7
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 4.1e-77 292.4 159 83.0
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 5.4e-77 292.0 154 85.7
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 7.5e-71 271.6 217 63.6
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 2.0e-68 263.5 219 59.8
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 3.1e-64 249.6 177 67.8
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 6.8e-64 248.4 181 68.0
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 2.0e-63 246.9 147 73.5
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 2.6e-63 246.5 149 75.8
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 1.7e-54 217.2 125 77.6
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 2.1e-52 210.3 147 67.3
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 6.4e-38 162.2 172 50.6
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 2.4e-16 90.5 81 54.3
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 1.7e-14 84.3 49 73.5
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 2.1e-12 77.4 84 53.6
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 6.1e-12 75.9 83 49.4
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 1.6e-09 67.8 46 63.0


User provided reference genes

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