Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 3.5e-39 164.5 81 100.0
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 2.3e-35 151.8 80 93.8
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 1.2e-34 149.4 80 90.0
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 1.5e-34 149.1 80 90.0
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 2.6e-34 148.3 80 90.0
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 2.6e-34 148.3 80 88.8
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 4.9e-33 144.1 80 86.2
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 6.3e-33 143.7 80 86.2
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 6.3e-33 143.7 80 86.2
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 6.3e-33 143.7 80 86.2
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 6.3e-33 143.7 80 83.8
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 1.1e-32 142.9 80 85.0
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 1.4e-32 142.5 80 83.8
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 1.8e-32 142.1 80 86.2
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 1.8e-32 142.1 80 86.2
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 2.4e-32 141.7 80 83.8
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 3.1e-32 141.4 80 85.0
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 5.4e-32 140.6 80 82.5
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 9.2e-32 139.8 80 85.0
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 9.2e-32 139.8 80 85.0
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 1.2e-31 139.4 80 83.8
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 1.2e-31 139.4 79 83.5
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 2.0e-31 138.7 80 82.5
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 2.7e-31 138.3 80 82.5
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 2.7e-31 138.3 80 81.2
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 3.5e-31 137.9 80 81.2
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 4.5e-31 137.5 80 82.5
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 4.5e-31 137.5 80 80.0
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 5.9e-31 137.1 80 80.0
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 1.0e-30 136.3 80 81.2
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 1.0e-30 136.3 80 78.8
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 2.3e-30 135.2 80 80.0
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 3.8e-30 134.4 80 81.2
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 3.8e-30 134.4 80 78.8
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 3.8e-30 134.4 80 80.0
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 5.0e-30 134.0 80 77.5
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 5.0e-30 134.0 80 77.5
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 5.0e-30 134.0 80 80.0
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 6.6e-30 133.7 80 80.0
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 6.6e-30 133.7 80 77.5
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 1.1e-29 132.9 79 78.5
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 1.1e-29 132.9 80 80.0
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 1.5e-29 132.5 80 80.0
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 1.9e-29 132.1 80 80.0
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 1.9e-29 132.1 80 80.0
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 2.5e-29 131.7 80 78.8
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 2.5e-29 131.7 80 77.5
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 3.3e-29 131.3 80 75.0
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.3e-29 131.3 80 78.8
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 4.3e-29 131.0 80 76.2
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 4.3e-29 131.0 80 77.5
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.6e-29 130.6 80 78.8
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 7.3e-29 130.2 80 78.8
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 9.5e-29 129.8 80 77.5
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 9.5e-29 129.8 80 72.5
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.2e-28 129.4 80 76.2
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 1.6e-28 129.0 80 75.0
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 1.6e-28 129.0 80 71.2
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 1.6e-28 129.0 80 75.0
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 2.8e-28 128.3 80 72.5
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 2.8e-28 128.3 80 75.0
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 4.7e-28 127.5 80 75.0
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 4.7e-28 127.5 80 73.8
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 8.0e-28 126.7 80 70.0
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 8.0e-28 126.7 80 70.0
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 8.0e-28 126.7 80 71.2
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 1.0e-27 126.3 80 76.2
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 1.0e-27 126.3 80 72.5
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 1.0e-27 126.3 80 77.5
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 1.4e-27 125.9 80 76.2
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 1.8e-27 125.6 77 77.9
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 1.8e-27 125.6 80 75.0
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 1.8e-27 125.6 80 75.0
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 2.3e-27 125.2 80 76.2
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 2.3e-27 125.2 80 73.8
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 5.2e-27 124.0 80 76.2
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 5.2e-27 124.0 80 67.5
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 6.8e-27 123.6 80 71.2
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 6.8e-27 123.6 80 70.0
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 8.9e-27 123.2 80 72.5
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 8.9e-27 123.2 80 67.5
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.2e-26 122.9 80 72.5
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 1.2e-26 122.9 80 76.2
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.0e-26 122.1 80 71.2
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 2.6e-26 121.7 92 67.4
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 5.7e-26 120.6 80 68.8
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 7.5e-26 120.2 80 72.5
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 7.0e-24 113.6 80 66.2
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 3.5e-23 111.3 80 65.0
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 1.7e-22 109.0 80 61.2
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 4.3e-21 104.4 74 64.9
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 3.6e-20 101.3 80 60.0
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 1.1e-19 99.8 132 44.7
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 2.0e-18 95.5 80 53.8
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 9.8e-18 93.2 48 89.6
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.2e-17 92.0 60 71.7
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 1.9e-16 89.0 80 51.2
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 5.4e-16 87.4 60 70.0
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 8.6e-14 80.1 73 50.7
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 3.3e-13 78.2 79 57.0
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 2.6e-10 68.6 77 42.9
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 6.4e-09 63.9 48 52.1
AL2G24330 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 3.5e-07 58.2 34 82.4


User provided reference genes

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