Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39306 Trifolium pratense HOM05D009670 ORTHO05D010890 1.4e-131 473.0 245 100.0
TPR.G39843 Trifolium pratense HOM05D009670 ORTHO05D010890 2.0e-45 186.8 90 95.6
TPR.G11728 Trifolium pratense HOM05D009670 ORTHO05D010890 2.7e-34 149.8 83 81.9
Medtr2g015330 Medicago truncatula HOM05D009670 ORTHO05D010890 1.7e-28 130.6 91 72.5
Ca_00413_v3 Cicer arietinum L. HOM05D009670 ORTHO05D010890 2.4e-27 126.7 90 70.0
Ca_30157_v3 Cicer arietinum L. HOM05D009670 ORTHO05D010890 2.4e-27 126.7 90 70.0
Psat1g200600 Pisum sativum HOM05D009670 ORTHO05D010890 8.6e-25 118.2 90 65.6
Ca_11781_v3 Cicer arietinum L. HOM05D000155 ORTHO05D000022 3.1e-22 109.8 147 39.5
Ca_11916_v3 Cicer arietinum L. HOM05D000003 ORTHO05D000022 8.9e-22 108.2 147 39.5
Phvul.006G178900 Phaseolus vulgaris HOM05D009670 ORTHO05D010890 1.5e-21 107.5 89 58.4
VMungo0540G1521 Vigna mungo HOM05D009670 ORTHO05D010890 7.6e-21 105.1 89 59.6
Glyma.15G079800 Glycine max HOM05D009670 ORTHO05D010890 1.7e-20 104.0 89 61.8
TPR.G17021 Trifolium pratense HOM05D008718 ORTHO05D010957 4.1e-19 99.4 72 69.4
Lj6g0011843 Lotus japonicus HOM05D009670 ORTHO05D010890 1.2e-18 97.8 89 56.2
TPR.G33526 Trifolium pratense HOM05D000155 ORTHO05D000022 2.7e-18 96.7 147 38.1
Lj1g0012311 Lotus japonicus HOM05D009670 ORTHO05D010890 3.9e-17 92.8 89 55.1
Psat7g185880 Pisum sativum HOM05D047273 ORTHO05D000022 1.5e-16 90.9 74 59.5
Psat1g119200 Pisum sativum HOM05D000003 ORTHO05D000022 2.2e-12 77.0 83 43.4
TPR.G32733 Trifolium pratense HOM05D000005 ORTHO05D000012 2.2e-12 77.0 83 42.2
arahy.Tifrunner.gnm1.ann1.3ZGA1D Arachis hypogaea HOM05D000155 ORTHO05D000022 4.9e-12 75.9 150 32.0
Lalb_Chr09g0330401 Lupinus albus HOM05D000155 ORTHO05D000022 9.3e-11 71.6 148 31.1
Lj1g0013654 Lotus japonicus HOM05D000155 ORTHO05D000022 7.8e-10 68.6 58 55.2
Lalb_Chr07g0182561 Lupinus albus HOM05D000155 ORTHO05D000022 1.0e-09 68.2 137 31.4
arahy.Tifrunner.gnm1.ann1.G0IJW6 Arachis hypogaea HOM05D000155 ORTHO05D000022 1.3e-09 67.8 136 30.9
arahy.Tifrunner.gnm1.ann1.WYFF13 Arachis hypogaea HOM05D000155 ORTHO05D000022 1.3e-09 67.8 132 33.3
QL05p056994 Quercus lobata HOM05D000003 ORTHO05D000022 3.9e-09 66.2 60 51.7
arahy.Tifrunner.gnm1.ann1.C2YB6M Arachis hypogaea HOM05D000009 ORTHO05D000008 5.1e-09 65.9 61 49.2
CSS0006381 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 5.1e-09 65.9 82 42.7
VMungo1383G2358 Vigna mungo HOM05D000005 ORTHO05D000012 8.7e-09 65.1 63 47.6
Phvul.001G128200 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 1.1e-08 64.7 63 44.4
Lj4g0027011 Lotus japonicus HOM05D000003 ORTHO05D000022 4.3e-08 62.8 58 53.4
Nitab4.5_0000411g0070 Nicotiana tabacum HOM05D000003 ORTHO05D004636 5.6e-08 62.4 79 40.5
Hma1.2p1_0028F.1_g017510 Hydrangea macrophylla HOM05D000003 ORTHO05D000022 7.3e-08 62.0 57 43.9
Nitab4.5_0002978g0180 Nicotiana tabacum HOM05D008381 ORTHO05D004636 7.3e-08 62.0 57 50.9
Nitab4.5_0001115g0120 Nicotiana tabacum HOM05D012456 ORTHO05D000022 1.3e-07 61.2 79 40.5
TPR.G21331 Trifolium pratense HOM05D000003 ORTHO05D000022 1.3e-07 61.2 72 41.7
CSS0032702 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.6e-07 60.8 54 50.0
Hma1.2p1_0150F.1_g066640 Hydrangea macrophylla HOM05D000003 ORTHO05D000022 1.6e-07 60.8 67 43.3
Nitab4.5_0007164g0040 Nicotiana tabacum HOM05D014268 ORTHO05D014203 1.6e-07 60.8 65 44.6
CSS0026614 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.1e-07 60.5 61 47.5
CSS0041590 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.1e-07 60.5 54 50.0
TWI38G0333 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.1e-07 60.5 59 47.5
Nitab4.5_0000640g0160 Nicotiana tabacum HOM05D000003 ORTHO05D000022 2.8e-07 60.1 56 48.2
arahy.Tifrunner.gnm1.ann1.NAQ3HP Arachis hypogaea HOM05D000003 ORTHO05D000022 3.6e-07 59.7 126 30.2
CSS0010523 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.6e-07 59.7 61 47.5
CSS0043443 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.6e-07 59.7 56 50.0
LjContig00408g0000741 Lotus japonicus HOM05D000003 ORTHO05D001390 3.6e-07 59.7 69 43.5
Nitab4.5_0002972g0040 Nicotiana tabacum HOM05D012456 ORTHO05D004636 3.6e-07 59.7 78 39.7
CSS0032736 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 4.8e-07 59.3 54 48.1
CSS0036731 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 4.8e-07 59.3 54 48.1
CSS0049818 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 4.8e-07 59.3 61 47.5
Hma1.2p1_0931F.1_g238170 Hydrangea macrophylla HOM05D000003 ORTHO05D000022 4.8e-07 59.3 57 43.9
Lj5g0005529 Lotus japonicus HOM05D000003 ORTHO05D000022 4.8e-07 59.3 67 47.8
QL06p035443 Quercus lobata HOM05D000003 ORTHO05D000022 4.8e-07 59.3 58 50.0
CSS0027105 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 6.2e-07 58.9 54 51.9
CSS0038564 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 6.2e-07 58.9 56 46.4
Ca_27941_v3 Cicer arietinum L. HOM05D000085 ORTHO05D013008 6.2e-07 58.9 147 31.3
QL01p016208 Quercus lobata HOM05D000155 ORTHO05D000022 6.2e-07 58.9 65 46.2
QL01p016211 Quercus lobata HOM05D000155 ORTHO05D000022 6.2e-07 58.9 65 46.2
CSS0016748 Camellia sinensis var. sinensis HOM05D000155 ORTHO05D000022 8.1e-07 58.5 56 48.2
CSS0044722 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 8.1e-07 58.5 59 47.5
CSS0007439 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.1e-06 58.2 70 41.4
Lj1P688T36 Lonicera japonica HOM05D000155 ORTHO05D000022 1.1e-06 58.2 54 53.7
Actinidia01050 Actinidia chinensis HOM05D000155 ORTHO05D000022 1.4e-06 57.8 52 51.9
Actinidia24692 Actinidia chinensis HOM05D000155 ORTHO05D000022 1.4e-06 57.8 52 51.9
arahy.Tifrunner.gnm1.ann1.PA7RNP Arachis hypogaea HOM05D000003 ORTHO05D000022 1.4e-06 57.8 57 43.9
Ciclev10021474m.g Citrus clementina HOM05D000003 ORTHO05D000022 1.4e-06 57.8 59 42.4
QL01p018268 Quercus lobata HOM05D000155 ORTHO05D000022 1.4e-06 57.8 65 49.2
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-06 57.4 58 44.8
CSS0011382 Camellia sinensis var. sinensis HOM05D000155 ORTHO05D000022 1.8e-06 57.4 56 44.6
CSS0033039 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.8e-06 57.4 54 48.1
Lj1P685T53 Lonicera japonica HOM05D000155 ORTHO05D000022 1.8e-06 57.4 54 51.9
Lj1P687T17 Lonicera japonica HOM05D000155 ORTHO05D000022 1.8e-06 57.4 54 51.9
Nitab4.5_0001828g0020 Nicotiana tabacum HOM05D000003 ORTHO05D000022 1.8e-06 57.4 55 49.1
Thecc.04G008500 Theobroma cacao HOM05D000088 ORTHO05D000830 1.8e-06 57.4 85 36.5
Actinidia31833 Actinidia chinensis HOM05D000155 ORTHO05D000022 2.4e-06 57.0 52 51.9
CSS0023133 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.4e-06 57.0 54 50.0
CSS0038037 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.4e-06 57.0 54 48.1
Atru.chr3.1522 Acer truncatum HOM05D000003 ORTHO05D000006 3.1e-06 56.6 58 46.6
Atru.chr7.713 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-06 56.6 58 46.6
arahy.Tifrunner.gnm1.ann1.C14R7W Arachis hypogaea HOM05D000003 ORTHO05D000022 3.1e-06 56.6 57 43.9
Glyma.07G238550 Glycine max HOM05D000003 ORTHO05D000004 3.1e-06 56.6 71 45.1
QL01p016224 Quercus lobata HOM05D000155 ORTHO05D000022 3.1e-06 56.6 65 44.6
QL08p061842 Quercus lobata HOM05D000003 ORTHO05D000004 3.1e-06 56.6 52 53.8
TPR.G5368 Trifolium pratense HOM05D008718 ORTHO05D000022 3.1e-06 56.6 95 35.8
Atru.chr4.1146 Acer truncatum HOM05D000003 ORTHO05D000022 4.0e-06 56.2 58 46.6
EL10Ac4g07834 Beta vulgaris HOM05D000092 ORTHO05D015437 4.0e-06 56.2 59 45.8
Nitab4.5_0001319g0060 Nicotiana tabacum HOM05D011052 ORTHO05D004636 5.3e-06 55.8 55 45.5
Nitab4.5_0007929g0010 Nicotiana tabacum HOM05D008381 ORTHO05D004636 5.3e-06 55.8 73 39.7
QL07p031943 Quercus lobata HOM05D000155 ORTHO05D000022 5.3e-06 55.8 72 44.4
SHI14600 Sapria himalayana HOM05D000024 ORTHO05D000007 5.3e-06 55.8 56 48.2
Lj3g0014530 Lotus japonicus HOM05D000003 ORTHO05D000022 6.9e-06 55.5 126 27.8
SHI40397 Sapria himalayana HOM05D000024 ORTHO05D000007 6.9e-06 55.5 80 38.8
SHI41809 Sapria himalayana HOM05D000003 ORTHO05D000004 6.9e-06 55.5 90 38.9
vmacro21508 Vaccinium macrocarpon HOM05D001386 ORTHO05D003791 6.9e-06 55.5 56 46.4
Actinidia31778 Actinidia chinensis HOM05D000155 ORTHO05D000022 9.0e-06 55.1 52 50.0
EL10Ac4g08331 Beta vulgaris HOM05D008685 ORTHO05D000022 9.0e-06 55.1 57 47.4
Nitab4.5_0001320g0140 Nicotiana tabacum HOM05D008381 ORTHO05D004636 9.0e-06 55.1 53 45.3
RcHm_v2.0_Chr5g0018821 Rosa chinensis HOM05D000003 ORTHO05D000022 9.0e-06 55.1 75 41.3
RcHm_v2.0_Chr5g0040021 Rosa chinensis HOM05D000003 ORTHO05D000022 9.0e-06 55.1 75 41.3
SHI17669 Sapria himalayana HOM05D004990 ORTHO05D000022 9.0e-06 55.1 77 39.0
SHI41116 Sapria himalayana HOM05D000024 ORTHO05D000007 9.0e-06 55.1 56 44.6


User provided reference genes

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