Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39277 Trifolium pratense HOM05D002100 ORTHO05D028776 2.0e-133 479.2 249 100.0
Psat5g041240 Pisum sativum HOM05D002100 ORTHO05D002310 1.6e-90 336.7 280 69.3
Ca_22843_v3 Cicer arietinum L. HOM05D002100 ORTHO05D002310 1.3e-89 333.6 280 69.3
Medtr8g469540 Medicago truncatula HOM05D002100 ORTHO05D002310 6.4e-76 288.1 282 62.8
Lj4g0001192 Lotus japonicus HOM05D002100 ORTHO05D002310 3.2e-59 232.6 278 55.0
TPR.G36558 Trifolium pratense HOM05D002100 ORTHO05D002310 5.4e-59 231.9 166 80.7
arahy.Tifrunner.gnm1.ann1.4BR56W Arachis hypogaea HOM05D002100 ORTHO05D002310 1.9e-56 223.4 303 50.8
Glyma.18G127267 Glycine max HOM05D002100 ORTHO05D002310 4.8e-55 218.8 281 52.3
arahy.Tifrunner.gnm1.ann1.3BV3CB Arachis hypogaea HOM05D002100 ORTHO05D002310 1.8e-54 216.9 303 49.8
Glyma.08G295700 Glycine max HOM05D002100 ORTHO05D002310 4.0e-54 215.7 280 50.4
VMungo0251G3550 Vigna mungo HOM05D002100 ORTHO05D002310 7.6e-53 211.5 282 50.4
Phvul.003G070600 Phaseolus vulgaris HOM05D002100 ORTHO05D002310 8.4e-52 208.0 285 49.5
TPR.G35811 Trifolium pratense HOM05D002100 ORTHO05D028776 2.3e-41 173.3 94 97.9
TPR.G29556 Trifolium pratense HOM05D002100 ORTHO05D002310 1.2e-37 161.0 85 97.6
Lalb_Chr10g0097911 Lupinus albus HOM05D002100 ORTHO05D002310 5.1e-25 119.0 264 40.9
Dinv24948 Davidia involucrata HOM05D002100 ORTHO05D002310 1.1e-22 111.3 302 33.8
Gohir.D01G130900 Gossypium hirsutum HOM05D002100 ORTHO05D002310 9.1e-22 108.2 301 33.6
Gohir.A01G140400 Gossypium hirsutum HOM05D002100 ORTHO05D002310 1.2e-21 107.8 301 33.6
Cfa009047 Carpinus fangiana HOM05D002100 ORTHO05D002310 4.5e-21 105.9 317 34.4
Manes.05G095600 Manihot esculenta HOM05D002100 ORTHO05D002310 1.3e-20 104.4 168 45.8
Gorai.002G162600 Gossypium raimondii HOM05D002100 ORTHO05D002310 2.2e-20 103.6 301 33.2
CiPaw.05G140900 Carya illinoinensis HOM05D002100 ORTHO05D002310 3.8e-20 102.8 312 33.3
Lj3A1043G72 Lonicera japonica HOM05D002100 ORTHO05D002310 6.5e-20 102.1 159 45.9
Thecc.02G233900 Theobroma cacao HOM05D002100 ORTHO05D002310 5.5e-19 99.0 166 42.2
CiPaw.06G080100 Carya illinoinensis HOM05D002100 ORTHO05D002310 2.7e-18 96.7 302 33.4
CANSAT35G1761 Cannabis sativa HOM05D002100 ORTHO05D002310 1.4e-17 94.4 257 34.6
Duzib251G0930 Durio zibethinus HOM05D002100 ORTHO05D002310 1.4e-17 94.4 313 30.0
Potri.010G034800 Populus trichocarpa HOM05D002100 ORTHO05D002310 2.3e-17 93.6 169 42.0
Prupe.1G265900 Prunus persica HOM05D002100 ORTHO05D002310 5.2e-17 92.4 166 41.6
Ciclev10030660m.g Citrus clementina HOM05D002100 ORTHO05D002310 1.1e-16 91.3 305 31.1
Nn4g23017 Nelumbo nucifera HOM05D002100 ORTHO05D002310 3.3e-16 89.7 162 43.8
Atru.chr11.1868 Acer truncatum HOM05D002100 ORTHO05D002310 9.7e-16 88.2 158 38.0
GSVIVG01020087001 Vitis vinifera HOM05D002100 ORTHO05D002310 9.7e-16 88.2 291 30.6
MD13G1080600 Malus domestica HOM05D002100 ORTHO05D002310 1.3e-15 87.8 172 40.7
Hma1.2p1_0265F.1_g106520 Hydrangea macrophylla HOM05D002100 ORTHO05D002310 1.7e-15 87.4 155 45.2
Hund05920 Selenicereus undatus HOM05D002100 ORTHO05D002310 1.7e-15 87.4 153 37.9
Haze_12077 Corylus avellana HOM05D002100 ORTHO05D002310 2.8e-15 86.7 298 32.2
Cpa.g.sc5.284 Carica papaya HOM05D002100 ORTHO05D002310 1.1e-14 84.7 262 35.1
CSS0007115 Camellia sinensis var. sinensis HOM05D002100 ORTHO05D002310 1.4e-14 84.3 258 33.3
FAN17G0980 Fragaria x ananassa HOM05D002100 ORTHO05D002310 1.4e-14 84.3 175 40.6
FAN07G0815 Fragaria x ananassa HOM05D002100 ORTHO05D002310 5.3e-14 82.4 172 38.4
QL03p066060 Quercus lobata HOM05D002100 ORTHO05D002310 2.0e-13 80.5 302 30.8
FvH4_4g35780 Fragaria vesca HOM05D002100 ORTHO05D002310 4.5e-13 79.3 166 37.3
FAN22G0712 Fragaria x ananassa HOM05D002100 ORTHO05D002310 7.7e-13 78.6 163 38.7
FAN12G3573 Fragaria x ananassa HOM05D002100 ORTHO05D002310 2.9e-12 76.6 166 36.7
Actinidia31169 Actinidia chinensis HOM05D002100 ORTHO05D002310 3.8e-12 76.3 287 30.7
DCAR_026595 Daucus carota HOM05D002100 ORTHO05D002310 8.5e-12 75.1 154 40.3
PSO591G0226 Papaver somniferum HOM05D002100 ORTHO05D002310 8.5e-12 75.1 165 33.9
QL03p066318 Quercus lobata HOM05D002100 ORTHO05D002310 8.5e-12 75.1 294 30.6
vmacro16319 Vaccinium macrocarpon HOM05D002100 ORTHO05D002310 8.5e-12 75.1 293 28.3
PSO832G0251 Papaver somniferum HOM05D002100 ORTHO05D002310 1.1e-11 74.7 165 33.3
Rhsim12G0129100 Rhododendron simsii HOM05D002100 ORTHO05D002310 1.1e-11 74.7 156 39.1
Sabra10G0030000 Salix brachista HOM05D002100 ORTHO05D002310 7.2e-11 72.0 164 39.0
Lsat_1_v5_gn_3_49920 Lactuca sativa HOM05D002100 ORTHO05D002310 1.6e-10 70.9 151 33.8
Nitab4.5_0000679g0140 Nicotiana tabacum HOM05D002100 ORTHO05D002310 2.1e-10 70.5 130 41.5
Solyc05g006910.4 Solanum lycopersicum HOM05D002100 ORTHO05D002310 4.7e-10 69.3 170 37.6
Sopen05g002870 Solanum pennellii HOM05D002100 ORTHO05D002310 4.7e-10 69.3 170 37.6
RcHm_v2.0_Chr4g0445291 Rosa chinensis HOM05D002100 ORTHO05D002310 8.0e-10 68.6 159 37.7
Cc11_g13610 Coffea canephora HOM05D002100 ORTHO05D002310 1.4e-09 67.8 156 35.9
SGA_v2.0_scaffold166G38285 Striga asiatica HOM05D002100 ORTHO05D002310 1.4e-09 67.8 164 37.2
EL10Ac6g13135 Beta vulgaris HOM05D002100 ORTHO05D002310 2.3e-09 67.0 149 34.2
Nitab4.5_0001055g0030 Nicotiana tabacum HOM05D002100 ORTHO05D002310 2.3e-09 67.0 270 30.4
Aqoxy3G03243 Aquilegia oxysepala HOM05D002100 ORTHO05D002310 1.5e-08 64.3 167 34.1
CAN.G27.20 Capsicum annuum HOM05D002100 ORTHO05D002310 3.3e-08 63.2 171 33.3
Peaxi162Scf00209g00717 Petunia axillaris HOM05D002100 ORTHO05D002310 3.3e-08 63.2 160 31.2
Hund25278 Selenicereus undatus HOM05D002100 ORTHO05D002310 9.7e-08 61.6 121 38.8
MBI04_g20679_MAGBIO Magnolia biondii HOM05D002100 ORTHO05D002310 1.7e-07 60.8 160 36.2
Dinv00764 Davidia involucrata HOM05D002100 ORTHO05D028776 1.1e-06 58.2 57 56.1
AUR62030813 Chenopodium quinoa HOM05D002100 ORTHO05D002310 1.8e-06 57.4 140 32.9
AUR62026276 Chenopodium quinoa HOM05D002100 ORTHO05D028776 4.1e-06 56.2 143 35.0
ECA246G3850 Erigeron canadensis HOM05D002100 ORTHO05D002310 4.1e-06 56.2 166 31.3
Sopen09g007630 Solanum pennellii HOM05D002100 ORTHO05D002310 4.1e-06 56.2 139 36.0
Solyc09g014770.3 Solanum lycopersicum HOM05D002100 ORTHO05D002310 5.3e-06 55.8 139 36.0
PGSC0003DMG400008496 Solanum tuberosum HOM05D002100 ORTHO05D002310 7.0e-06 55.5 139 31.7
EL10Ac5g12541 Beta vulgaris HOM05D002100 ORTHO05D002310 9.1e-06 55.1 137 32.1
TAR629G0632 Trochodendron aralioides HOM05D002100 ORTHO05D002310 9.1e-06 55.1 80 46.2


User provided reference genes

Program Settings