Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 1.1e-121 439.9 212 100.0
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 9.9e-102 373.6 214 85.5
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 9.9e-102 373.6 214 85.5
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 4.0e-95 351.7 204 85.8
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 9.9e-94 347.1 204 80.4
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 3.2e-92 342.0 207 80.2
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 7.3e-89 330.9 207 76.8
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 9.6e-89 330.5 202 78.7
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 2.1e-88 329.3 202 78.7
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 3.6e-88 328.6 201 77.1
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 2.0e-86 322.8 213 73.7
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 1.3e-85 320.1 212 72.2
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 1.3e-85 320.1 182 81.3
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.7e-85 319.7 201 77.1
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 2.2e-85 319.3 200 77.0
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 2.4e-84 315.8 203 75.9
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 9.3e-84 313.9 208 72.6
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 1.2e-83 313.5 191 74.9
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 2.7e-83 312.4 209 71.8
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 1.0e-82 310.5 207 70.5
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 3.9e-82 308.5 186 75.8
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 3.9e-82 308.5 207 71.5
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 1.9e-81 306.2 210 70.5
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 2.8e-80 302.4 184 76.1
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 8.1e-80 300.8 181 75.7
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 8.1e-80 300.8 179 77.1
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 2.4e-79 299.3 206 69.4
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 2.6e-78 295.8 188 72.9
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 1.3e-77 293.5 178 77.5
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 8.4e-77 290.8 198 69.7
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 1.1e-76 290.4 180 74.4
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 1.1e-76 290.4 171 75.4
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 1.4e-76 290.0 175 76.6
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 1.4e-76 290.0 175 76.6
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 1.4e-76 290.0 195 71.3
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 1.9e-76 289.7 171 74.9
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 3.2e-76 288.9 187 72.2
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 3.2e-76 288.9 176 75.6
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 4.2e-76 288.5 194 70.6
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 5.4e-76 288.1 204 67.6
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 7.1e-76 287.7 187 70.6
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 9.3e-76 287.3 180 73.9
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 9.3e-76 287.3 187 71.7
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 2.1e-75 286.2 178 73.6
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 2.7e-75 285.8 180 72.2
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 6.0e-75 284.6 195 68.2
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 7.9e-75 284.3 168 76.8
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 1.3e-74 283.5 171 73.1
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 1.3e-74 283.5 194 69.6
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 2.3e-74 282.7 180 71.1
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 2.3e-74 282.7 185 70.8
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 3.0e-74 282.3 201 68.2
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 5.1e-74 281.6 212 65.1
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 6.7e-74 281.2 206 63.6
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 6.7e-74 281.2 180 70.6
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 8.7e-74 280.8 180 72.2
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.1e-73 280.4 178 73.0
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.1e-73 280.4 178 73.0
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 1.1e-73 280.4 189 67.7
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 1.3e-72 276.9 195 68.2
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 1.3e-72 276.9 174 73.6
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 1.3e-72 276.9 180 70.6
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 2.8e-72 275.8 183 69.4
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 2.8e-72 275.8 200 64.5
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 3.7e-72 275.4 184 68.5
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 4.8e-72 275.0 202 63.9
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 6.2e-72 274.6 165 75.8
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 8.1e-72 274.2 170 71.8
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 1.4e-71 273.5 168 75.6
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 2.4e-71 272.7 200 66.5
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 3.1e-71 272.3 177 71.2
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 5.3e-71 271.6 169 72.2
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 5.3e-71 271.6 198 65.7
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 5.3e-71 271.6 196 65.3
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 9.0e-71 270.8 170 71.2
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 3.4e-70 268.9 198 63.1
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 4.5e-70 268.5 204 63.2
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 4.5e-70 268.5 186 68.3
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 5.8e-70 268.1 180 67.8
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 1.0e-69 267.3 218 61.0
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 1.0e-69 267.3 218 61.0
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 1.0e-69 267.3 202 63.4
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.3e-69 266.9 204 62.7
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 1.3e-69 266.9 198 64.6
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 1.3e-69 266.9 165 70.3
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 2.2e-69 266.2 202 62.9
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 4.9e-69 265.0 199 62.8
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 4.9e-69 265.0 176 70.5
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 6.5e-69 264.6 172 69.2
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.4e-68 263.5 195 64.6
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 2.5e-68 262.7 194 66.5
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 2.5e-68 262.7 162 79.6
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 7.1e-68 261.2 170 70.0
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 1.2e-67 260.4 215 61.9
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 2.1e-67 259.6 180 67.2
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 4.6e-67 258.5 176 69.3
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 4.6e-67 258.5 177 68.9
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 4.6e-67 258.5 184 64.7
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.0e-66 257.3 195 63.1
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 1.0e-66 257.3 192 64.1
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 3.0e-66 255.8 170 68.8
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 6.7e-66 254.6 179 66.5
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 1.9e-65 253.1 185 64.3
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 2.5e-65 252.7 176 68.2
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 4.3e-65 251.9 178 65.7
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 2.1e-64 249.6 198 66.2
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 4.8e-64 248.4 176 67.6
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 2.4e-63 246.1 179 65.9
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 3.1e-63 245.7 212 59.0
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 3.1e-63 245.7 145 73.8
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 1.2e-62 243.8 176 66.5
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 1.2e-62 243.8 176 66.5
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 3.4e-62 242.3 176 66.5
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 5.8e-62 241.5 176 66.5
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 5.0e-61 238.4 152 72.4
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 4.2e-60 235.3 291 45.7
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 5.5e-60 235.0 175 63.4
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 5.3e-55 218.4 128 73.4
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 1.0e-53 214.2 179 57.0
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 3.6e-51 205.7 158 66.5
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 1.4e-50 203.8 166 59.0
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 5.1e-50 201.8 138 71.0
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 4.3e-49 198.7 159 60.4
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 4.8e-48 195.3 164 51.8
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 2.7e-43 179.5 176 49.4
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 2.6e-38 162.9 172 48.3
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 6.1e-35 151.8 169 48.5
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 5.2e-34 148.7 171 46.8
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 5.2e-34 148.7 77 88.3
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 9.7e-33 144.4 181 43.6
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 9.7e-33 144.4 192 39.1
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 4.1e-31 139.0 154 44.8
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 1.0e-26 124.4 186 34.4
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 1.3e-24 117.5 166 39.8
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 3.6e-19 99.4 61 67.2
arahy.Tifrunner.gnm1.ann1.C3UJQ4 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.3e-13 80.9 71 59.2
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 2.3e-13 80.1 65 55.4
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 2.8e-11 73.2 192 30.7
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 3.6e-11 72.8 57 63.2
Medtr8g106160 Medicago truncatula HOM05D005581 ORTHO05D006792 1.8e-07 60.5 53 67.9
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 2.4e-07 60.1 131 31.3


User provided reference genes

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