Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39126 Trifolium pratense HOM05D005389 ORTHO05D008484 0.0e+00 1440.6 717 100.0
Medtr7g030060 Medicago truncatula HOM05D005389 ORTHO05D008484 0.0e+00 1321.2 712 91.7
Medtr7g038700 Medicago truncatula HOM05D005389 ORTHO05D008484 0.0e+00 1321.2 712 91.7
Ca_19612_v3 Cicer arietinum L. HOM05D005389 ORTHO05D008484 0.0e+00 1310.0 712 91.0
Psat3g165760 Pisum sativum HOM05D005389 ORTHO05D008484 0.0e+00 1304.3 712 90.3
Lj1g0011358 Lotus japonicus HOM05D005389 ORTHO05D008484 0.0e+00 1246.9 711 87.1
Glyma.01G077400 Glycine max HOM05D005389 ORTHO05D008484 0.0e+00 1238.8 711 86.2
Lalb_Chr21g0316351 Lupinus albus HOM05D005389 ORTHO05D008484 0.0e+00 1193.3 712 83.6
Phvul.008G153100 Phaseolus vulgaris HOM05D005389 ORTHO05D008484 0.0e+00 1190.3 711 82.6
arahy.Tifrunner.gnm1.ann1.D3X87A Arachis hypogaea HOM05D005389 ORTHO05D008484 0.0e+00 1177.2 711 82.3
arahy.Tifrunner.gnm1.ann1.T59QJ9 Arachis hypogaea HOM05D005389 ORTHO05D008484 0.0e+00 1176.8 711 82.4
Cfa007465 Carpinus fangiana HOM05D005389 ORTHO05D008484 0.0e+00 1090.1 712 75.7
QL02p077913 Quercus lobata HOM05D005389 ORTHO05D008484 0.0e+00 1075.1 712 74.2
CiPaw.03G035000 Carya illinoinensis HOM05D005389 ORTHO05D008484 6.3e-310 1067.0 712 73.6
GSVIVG01032529001 Vitis vinifera HOM05D005389 ORTHO05D008484 6.3e-310 1067.0 712 73.2
Ciclev10010988m.g Citrus clementina HOM05D005389 ORTHO05D008484 5.0e-307 1057.4 711 72.3
VMungo1383G0108 Vigna mungo HOM05D005389 ORTHO05D008484 2.5e-306 1055.0 606 84.0
Thecc.04G003900 Theobroma cacao HOM05D005389 ORTHO05D008484 3.6e-305 1051.2 712 72.1
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 5.7e-303 1043.9 712 71.1
Gohir.A07G218100 Gossypium hirsutum HOM05D005389 ORTHO05D008484 5.7e-303 1043.9 712 71.6
Prupe.3G279400 Prunus persica HOM05D005389 ORTHO05D008484 1.3e-302 1042.7 712 72.8
TWI36G1051 Tripterygium wilfordii HOM05D005389 ORTHO05D008484 1.7e-302 1042.3 711 72.0
Gorai.001G259600 Gossypium raimondii HOM05D005389 ORTHO05D008484 1.4e-301 1039.3 712 71.5
Gohir.D07G225200 Gossypium hirsutum HOM05D005389 ORTHO05D008484 3.1e-301 1038.1 712 71.3
TAR374G1603 Trochodendron aralioides HOM05D005389 ORTHO05D008484 1.2e-297 1026.2 713 71.2
Manes.17G118300 Manihot esculenta HOM05D005389 ORTHO05D008484 1.4e-296 1022.7 712 71.1
MD09G1038400 Malus domestica HOM05D005389 ORTHO05D008484 8.9e-296 1020.0 712 71.8
Sc06g0002580 Simmondsia chinensis HOM05D005389 ORTHO05D008484 1.5e-295 1019.2 713 70.1
MD17G1039500 Malus domestica HOM05D005389 ORTHO05D008484 4.4e-295 1017.7 712 71.2
Hma1.2p1_0697F.1_g204985 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 1.7e-294 1015.8 712 70.6
Haze_14630 Corylus avellana HOM05D005389 ORTHO05D008484 2.4e-293 1011.9 723 70.5
vmacro05794 Vaccinium macrocarpon HOM05D005389 ORTHO05D008484 2.7e-292 1008.4 711 70.2
Sabra16G0230200 Salix brachista HOM05D005389 ORTHO05D008484 4.6e-292 1007.7 712 70.5
RcHm_v2.0_Chr2g0170441 Rosa chinensis HOM05D005389 ORTHO05D008484 2.5e-290 1001.9 716 69.8
Potri.001G350700 Populus trichocarpa HOM05D005389 ORTHO05D008484 4.3e-290 1001.1 711 69.8
Eucgr.I01836 Eucalyptus grandis HOM05D005389 ORTHO05D008484 1.4e-288 996.1 712 69.5
FvH4_6g50180 Fragaria vesca HOM05D005389 ORTHO05D008484 1.8e-288 995.7 716 69.6
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 1.8e-288 995.7 734 68.7
Lju41A31T33 Lonicera japonica HOM05D005389 ORTHO05D008484 2.3e-288 995.3 713 69.0
PGR142G1957 Punica granatum HOM05D005389 ORTHO05D008484 2.2e-286 988.8 712 68.5
Ah.16g106960 Amaranthus hybridus HOM05D005389 ORTHO05D008484 4.9e-286 987.6 711 68.9
FAN14G3523 Fragaria x ananassa HOM05D005389 ORTHO05D008484 9.2e-285 983.4 750 66.9
Nitab4.5_0005206g0050 Nicotiana tabacum HOM05D005389 ORTHO05D008484 1.6e-284 982.6 713 67.9
DCAR_013961 Daucus carota HOM05D005389 ORTHO05D008484 6.0e-284 980.7 712 69.2
Sopen02g031910 Solanum pennellii HOM05D005389 ORTHO05D008484 6.6e-283 977.2 711 68.5
THA.LOC104821073 Tarenaya hassleriana HOM05D005389 ORTHO05D008484 6.6e-283 977.2 712 68.7
CSS0036605 Camellia sinensis var. sinensis HOM05D005389 ORTHO05D008484 1.1e-282 976.5 712 70.2
Solyc02g087170.4 Solanum lycopersicum HOM05D005389 ORTHO05D008484 9.5e-282 973.4 711 67.9
Carub.0003s0071 Capsella rubella HOM05D005389 ORTHO05D008484 4.7e-281 971.1 712 67.8
Nitab4.5_0001952g0170 Nicotiana tabacum HOM05D005389 ORTHO05D008484 6.2e-281 970.7 724 66.4
AT3G01380 Arabidopsis thaliana HOM05D005389 ORTHO05D008484 1.8e-280 969.1 712 67.6
PGSC0003DMG400000509 Solanum tuberosum HOM05D005389 ORTHO05D008484 6.8e-280 967.2 711 67.5
Sp3g00690 Schrenkiella parvula HOM05D005389 ORTHO05D008484 8.9e-280 966.8 711 67.9
SalBow1G5751 Salvia bowleyana HOM05D005389 ORTHO05D008484 9.9e-279 963.4 712 67.1
Migut.H00153 Erythranthe guttata HOM05D005389 ORTHO05D008484 3.2e-277 958.4 714 66.5
C09p75190 Brassica napus HOM05D005389 ORTHO05D008484 5.4e-277 957.6 712 67.1
Thhalv10022528m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 5.4e-277 957.6 712 67.0
MBI14_g02685_MAGBIO Magnolia biondii HOM05D005389 ORTHO05D008484 7.1e-277 957.2 722 65.8
SGA_v2.0_scaffold135G34838 Striga asiatica HOM05D005389 ORTHO05D008484 1.0e-275 953.4 713 66.6
BolC5t35145H Brassica oleracea HOM05D005389 ORTHO05D008484 1.3e-275 953.0 712 67.0
CAN.G206.54 Capsicum annuum HOM05D005389 ORTHO05D008484 1.3e-275 953.0 711 66.7
Aa31LG5G10500 Aethionema arabicum HOM05D005389 ORTHO05D008484 1.1e-274 949.9 713 67.6
AL3G10820 Arabidopsis lyrata HOM05D005389 ORTHO05D008484 1.1e-274 949.9 757 63.8
BcaC05g30466 Brassica carinata HOM05D005389 ORTHO05D008484 1.1e-274 949.9 712 66.4
Lsat_1_v5_gn_4_181101 Lactuca sativa HOM05D005389 ORTHO05D008484 1.1e-274 949.9 713 65.9
A05p44600 Brassica napus HOM05D005389 ORTHO05D008484 5.6e-274 947.6 712 66.7
BraA05t23196Z Brassica rapa HOM05D005389 ORTHO05D008484 5.6e-274 947.6 712 66.7
Aqoxy3G00899 Aquilegia oxysepala HOM05D005389 ORTHO05D008484 1.2e-273 946.4 711 65.8
PSO161G0132 Papaver somniferum HOM05D005389 ORTHO05D008484 6.2e-273 944.1 711 66.2
Cc07_g02570 Coffea canephora HOM05D005389 ORTHO05D008484 1.4e-272 943.0 712 66.9
PSO478G0736 Papaver somniferum HOM05D005389 ORTHO05D008484 7.6e-271 937.2 711 66.0
FAN02G4477 Fragaria x ananassa HOM05D005389 ORTHO05D008484 1.1e-269 933.3 733 65.5
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 1.4e-269 932.9 733 65.8
HanXRQChr09g0265861 Helianthus annuus HOM05D005389 ORTHO05D008484 1.6e-268 929.5 714 65.1
Hund19981 Selenicereus undatus HOM05D005389 ORTHO05D008484 3.6e-265 918.3 712 63.8
AUR62037862 Chenopodium quinoa HOM05D005389 ORTHO05D008484 4.4e-263 911.4 712 64.7
Dinv35027 Davidia involucrata HOM05D005389 ORTHO05D008484 1.2e-260 903.3 667 68.7
Rhsim10G0027600 Rhododendron simsii HOM05D005389 ORTHO05D008484 6.0e-260 901.0 712 65.3
ECA232G1242 Erigeron canadensis HOM05D005389 ORTHO05D008484 7.8e-260 900.6 716 63.8
Zm00001eb245310 Zea mays HOM05D005389 ORTHO05D008484 4.0e-256 888.3 712 60.8
Nn4g22901 Nelumbo nucifera HOM05D005389 ORTHO05D008484 1.2e-255 886.7 670 65.8
ATR0800G105 Amborella trichopoda HOM05D005389 ORTHO05D008484 2.4e-245 852.4 719 58.7
Duzib264G0565 Durio zibethinus HOM05D005389 ORTHO05D008484 3.1e-240 835.5 712 60.5
Prupe.2G019300 Prunus persica HOM05D005389 ORTHO05D008484 6.0e-236 821.2 737 59.8
AUR62032098 Chenopodium quinoa HOM05D005389 ORTHO05D008484 6.5e-230 801.2 715 58.9
C07p01310 Brassica napus HOM05D005389 ORTHO05D008484 2.5e-226 789.3 569 67.3
Actinidia36063 Actinidia chinensis HOM05D005389 ORTHO05D008484 2.7e-220 769.2 577 67.1
Peaxi162Scf00129g00824 Petunia axillaris HOM05D005389 ORTHO05D008484 7.2e-205 718.0 657 57.5
Mapoly0007s0201 Marchantia polymorpha HOM05D005389 ORTHO05D008484 9.1e-200 701.0 716 49.6
CARHR075600 Cardamine hirsuta HOM05D005389 ORTHO05D008484 8.5e-198 694.5 561 64.0
Pp3c17_22750 Physcomitrium patens HOM05D005389 ORTHO05D008484 6.6e-190 668.3 721 47.6
Os02g0581000 Oryza sativa ssp. japonica HOM05D005389 ORTHO05D008484 3.7e-185 652.5 462 66.7
unitig_21.g20503 Utricularia gibba HOM05D005389 ORTHO05D008484 3.1e-179 632.9 576 58.5
AagrBONN_evm.TU.Sc2ySwM_368.926 Anthoceros agrestis HOM05D005389 ORTHO05D008484 3.2e-176 622.9 720 46.4
RcHm_v2.0_Chr7g0219571 Rosa chinensis HOM05D005389 ORTHO05D008484 1.1e-160 571.2 406 69.2
HPP92_017062 Vanilla planifolia HOM05D005389 ORTHO05D008484 9.2e-160 568.2 365 73.7
BcaNung07363 Brassica carinata HOM05D005389 ORTHO05D008484 1.1e-157 561.2 497 61.2
SMO244G0055 Selaginella moellendorffii HOM05D005389 ORTHO05D008484 3.3e-157 559.7 720 43.1
Cpa.g.sc14.89 Carica papaya HOM05D005389 ORTHO05D008484 1.2e-143 514.6 498 53.6
Thhalv10020372m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 4.8e-140 502.7 444 59.9
CDE04G3020 Ceratophyllum demersum HOM05D005389 ORTHO05D008484 1.3e-137 494.6 325 70.8
Atru.chr8.2421 Acer truncatum HOM05D005389 ORTHO05D008484 9.0e-123 445.3 251 80.9
SEGI_37358 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 8.2e-116 422.2 307 64.5
Cfa024795 Carpinus fangiana HOM05D005389 ORTHO05D008484 7.7e-90 335.9 740 33.9
Thhalv10021056m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 7.2e-88 329.3 176 83.0
CARHR075590 Cardamine hirsuta HOM05D005389 ORTHO05D008484 3.3e-72 277.3 153 80.4
SEGI_27782 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 2.3e-70 271.2 337 46.0
MCO14G282 Micromonas commoda HOM05D005389 ORTHO05D008484 2.3e-57 228.0 604 30.3
RcHm_v2.0_Chr7g0219561 Rosa chinensis HOM05D005389 ORTHO05D008484 8.9e-46 189.5 185 58.4
RcHm_v2.0_Chr7g0219531 Rosa chinensis HOM05D005389 ORTHO05D008484 2.4e-27 128.3 126 62.7
Hma1.2p1_1975F.1_g309760 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 9.0e-22 109.8 52 88.5
Actinidia13460 Actinidia chinensis HOM05D001853 ORTHO05D001908 2.1e-18 98.6 71 69.0
RcHm_v2.0_Chr7g0219581 Rosa chinensis HOM05D005389 ORTHO05D008484 1.3e-17 95.9 55 74.5
unitig_21.g20502 Utricularia gibba HOM05D005389 ORTHO05D008484 1.9e-16 92.0 44 84.1
Actinidia13461 Actinidia chinensis HOM05D005389 ORTHO05D008484 4.5e-13 80.9 74 51.4
Gohir.D08G122632 Gossypium hirsutum HOM05D005389 ORTHO05D048184 1.7e-12 79.0 71 59.2
Gorai.001G214100 Gossypium raimondii HOM05D005389 ORTHO05D048184 2.2e-12 78.6 71 59.2
Gorai.010G120100 Gossypium raimondii HOM05D005389 ORTHO05D047357 4.6e-10 70.9 58 60.3
Sed0000560 Sechium edule HOM05D006593 ORTHO05D008512 1.4e-06 59.3 192 27.1
ATR0665G270 Amborella trichopoda HOM05D006593 ORTHO05D008512 3.1e-06 58.2 185 28.1
Sc16g0000540 Simmondsia chinensis HOM05D006593 ORTHO05D004993 5.3e-06 57.4 193 26.4


User provided reference genes

Program Settings