Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 2.4e-50 201.8 100 100.0
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 1.1e-37 159.8 101 78.2
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 2.9e-35 151.8 100 74.0
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 1.1e-34 149.8 98 75.5
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 2.5e-31 138.7 99 69.7
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 3.3e-31 138.3 98 68.4
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 1.5e-28 129.4 99 66.7
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 2.2e-27 125.6 108 61.1
Glyma.09G204400 Glycine max HOM05D006292 ORTHO05D006110 1.2e-25 119.8 101 61.4
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 5.1e-24 114.4 103 55.3
Glyma.01G018500 Glycine max HOM05D006292 ORTHO05D006110 4.3e-23 111.3 102 57.8
VMungo1215G0846 Vigna mungo HOM05D006292 ORTHO05D006110 1.3e-19 99.8 119 46.2
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 3.5e-17 91.7 103 50.5
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 1.0e-16 90.1 103 49.5
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 3.9e-16 88.2 105 51.4
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 3.3e-15 85.1 107 47.7
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 1.3e-14 83.2 115 47.8
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 1.3e-14 83.2 116 47.4
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.6e-14 82.8 115 47.0
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 2.1e-14 82.4 115 47.0
Lj4g0026533 Lotus japonicus HOM05D006292 ORTHO05D006110 6.2e-14 80.9 101 51.5
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 1.1e-13 80.1 109 45.9
TPR.G28248 Trifolium pratense HOM05D006292 ORTHO05D006110 1.1e-13 80.1 100 48.0
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 1.4e-13 79.7 110 44.5
arahy.Tifrunner.gnm1.ann1.L0PZ9J Arachis hypogaea HOM05D006292 ORTHO05D006110 1.8e-13 79.3 99 49.5
arahy.Tifrunner.gnm1.ann1.RC41H8 Arachis hypogaea HOM05D006292 ORTHO05D006110 1.8e-13 79.3 99 49.5
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 1.8e-13 79.3 106 46.2
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 3.1e-13 78.6 112 48.2
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 4.0e-13 78.2 104 46.2
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 9.0e-13 77.0 109 46.8
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 9.0e-13 77.0 109 46.8
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 9.0e-13 77.0 109 49.5
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 2.0e-12 75.9 105 44.8
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 2.0e-12 75.9 111 45.0
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 1.3e-11 73.2 113 46.0
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 1.3e-11 73.2 103 45.6
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 2.2e-11 72.4 104 44.2
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 2.9e-11 72.0 104 45.2
Psat4g118000 Pisum sativum HOM05D006292 ORTHO05D006110 3.8e-11 71.6 104 43.3
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 4.9e-11 71.2 103 48.5
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 1.1e-10 70.1 111 45.0
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 1.4e-10 69.7 107 43.0
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 1.9e-10 69.3 106 43.4
FAN04G1003 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.9e-10 69.3 74 50.0
FAN08G0524 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.9e-10 69.3 74 50.0
FAN18G1495 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.9e-10 69.3 74 50.0
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 2.5e-10 68.9 99 45.5
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 3.2e-10 68.6 104 47.1
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 3.2e-10 68.6 118 40.7
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 4.2e-10 68.2 104 45.2
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 4.2e-10 68.2 108 44.4
Medtr8g067270 Medicago truncatula HOM05D006292 ORTHO05D006110 5.5e-10 67.8 104 39.4
Peaxi162Scf00460g00032 Petunia axillaris HOM05D006292 ORTHO05D006110 5.5e-10 67.8 102 40.2
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 7.1e-10 67.4 99 41.4
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 9.3e-10 67.0 115 43.5
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 9.3e-10 67.0 108 42.6
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 1.2e-09 66.6 73 49.3
Phvul.010G051800 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 1.2e-09 66.6 120 41.7
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 1.2e-09 66.6 108 41.7
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 1.6e-09 66.2 108 45.4
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 2.1e-09 65.9 115 42.6
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 2.1e-09 65.9 105 44.8
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 2.7e-09 65.5 108 45.4
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 7.9e-09 63.9 106 40.6
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 7.9e-09 63.9 71 50.7
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 1.0e-08 63.5 99 39.4
BcaB02g09469 Brassica carinata HOM05D006292 ORTHO05D006110 1.3e-08 63.2 99 38.4
CANSAT21G1416 Cannabis sativa HOM05D006292 ORTHO05D006110 1.8e-08 62.8 113 41.6
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 2.3e-08 62.4 98 39.8
BolC4t22939H Brassica oleracea HOM05D006292 ORTHO05D006110 2.3e-08 62.4 99 37.4
Sopen06g021400 Solanum pennellii HOM05D006292 ORTHO05D006110 2.3e-08 62.4 116 37.1
A05p10540 Brassica napus HOM05D006292 ORTHO05D006110 3.0e-08 62.0 99 37.4
BraA05t19992Z Brassica rapa HOM05D006292 ORTHO05D006110 3.0e-08 62.0 99 37.4
Solyc08g076940.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 3.0e-08 62.0 102 42.2
BcaC02g11625 Brassica carinata HOM05D006292 ORTHO05D006110 3.9e-08 61.6 99 37.4
C04p12960 Brassica napus HOM05D006292 ORTHO05D006110 3.9e-08 61.6 99 37.4
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 5.1e-08 61.2 96 40.6
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 5.1e-08 61.2 99 39.4
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 5.1e-08 61.2 103 43.7
Lalb_Chr09g0334701 Lupinus albus HOM05D006292 ORTHO05D006110 6.7e-08 60.8 104 41.3
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 8.7e-08 60.5 110 40.0
Sopen08g025520 Solanum pennellii HOM05D006292 ORTHO05D006110 8.7e-08 60.5 102 42.2
Ah.07g200350 Amaranthus hybridus HOM05D006292 ORTHO05D006110 1.1e-07 60.1 113 38.9
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 1.1e-07 60.1 115 41.7
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 1.5e-07 59.7 105 41.9
A04p26770 Brassica napus HOM05D006292 ORTHO05D006110 1.9e-07 59.3 104 38.5
C04p64170 Brassica napus HOM05D006292 ORTHO05D006110 1.9e-07 59.3 104 38.5
BraA04t18181Z Brassica rapa HOM05D006292 ORTHO05D006110 1.9e-07 59.3 104 38.5
BcaC02g07728 Brassica carinata HOM05D006292 ORTHO05D006110 2.5e-07 58.9 104 38.5
BolC4t27900H Brassica oleracea HOM05D006292 ORTHO05D006110 2.5e-07 58.9 104 38.5
BolC4t22949H Brassica oleracea HOM05D006292 ORTHO05D006110 3.3e-07 58.5 99 36.4
Gohir.A12G208300 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.3e-07 58.5 107 40.2
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 4.3e-07 58.2 111 42.3
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 7.4e-07 57.4 116 43.1
Gohir.D12G210900 Gossypium hirsutum HOM05D006292 ORTHO05D006110 7.4e-07 57.4 107 39.3
Gorai.008G226400 Gossypium raimondii HOM05D006292 ORTHO05D006110 7.4e-07 57.4 107 39.3
BcaB06g28832 Brassica carinata HOM05D006292 ORTHO05D006110 9.6e-07 57.0 104 38.5
CsaV3_3G001720 Cucumis sativus L. HOM05D006292 ORTHO05D006110 9.6e-07 57.0 113 41.6
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.3e-06 56.6 116 43.1
CARHR174730 Cardamine hirsuta HOM05D011808 ORTHO05D006110 1.6e-06 56.2 126 38.1
Actinidia14806 Actinidia chinensis HOM05D000567 ORTHO05D000767 2.8e-06 55.5 96 40.6
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 2.8e-06 55.5 105 37.1
CiPaw.11G093500 Carya illinoinensis HOM05D006292 ORTHO05D006110 3.7e-06 55.1 104 36.5
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 4.8e-06 54.7 116 42.2
Aa31LG9G15250 Aethionema arabicum HOM05D006292 ORTHO05D006110 6.2e-06 54.3 43 55.8
CsaV3_3G049160 Cucumis sativus L. HOM05D006292 ORTHO05D006110 6.2e-06 54.3 103 41.7
Sp2g11580 Schrenkiella parvula HOM05D011808 ORTHO05D006110 6.2e-06 54.3 115 38.3
SpUn0036_0030 Schrenkiella parvula HOM05D011808 ORTHO05D006110 6.2e-06 54.3 115 38.3


User provided reference genes

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