Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 5.5e-125 451.1 242 100.0
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 2.4e-72 276.2 144 91.7
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 9.3e-72 274.2 144 89.6
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 1.0e-70 270.8 144 89.6
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 1.9e-69 266.5 144 88.2
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 1.9e-69 266.5 144 88.2
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 2.5e-69 266.2 144 88.2
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 3.3e-69 265.8 144 88.2
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 6.2e-68 261.5 143 86.7
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 6.2e-68 261.5 144 82.6
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 1.1e-67 260.8 144 84.7
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 1.1e-67 260.8 144 84.7
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 1.1e-67 260.8 144 84.7
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 1.8e-67 260.0 144 82.6
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 3.1e-67 259.2 144 84.0
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 3.1e-67 259.2 144 86.8
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 5.3e-67 258.5 146 84.9
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 9.0e-67 257.7 144 84.7
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 1.5e-66 256.9 145 85.5
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 2.0e-66 256.5 144 84.0
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 2.0e-66 256.5 144 84.0
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 2.6e-66 256.1 144 84.0
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 2.6e-66 256.1 144 84.0
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 3.4e-66 255.8 144 82.6
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 5.8e-66 255.0 144 84.0
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.0e-65 254.2 144 82.6
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 1.3e-65 253.8 144 82.6
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 1.7e-65 253.4 144 83.3
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 1.7e-65 253.4 144 83.3
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 2.9e-65 252.7 144 80.6
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 2.9e-65 252.7 144 80.6
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 2.9e-65 252.7 144 79.9
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 2.9e-65 252.7 144 82.6
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 2.9e-65 252.7 198 66.2
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 3.8e-65 252.3 144 79.9
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 4.9e-65 251.9 144 80.6
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 6.5e-65 251.5 143 81.8
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 6.5e-65 251.5 144 81.2
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 6.5e-65 251.5 144 81.9
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 8.4e-65 251.1 144 80.6
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 8.4e-65 251.1 144 80.6
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 8.4e-65 251.1 144 82.6
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 8.4e-65 251.1 144 82.6
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 8.4e-65 251.1 144 82.6
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 1.1e-64 250.8 144 78.5
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 1.1e-64 250.8 144 81.9
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 1.4e-64 250.4 144 81.2
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 1.9e-64 250.0 144 81.2
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 3.2e-64 249.2 144 81.2
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 3.2e-64 249.2 141 82.3
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 4.2e-64 248.8 144 81.9
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 5.5e-64 248.4 144 79.2
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 7.1e-64 248.1 144 80.6
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 9.3e-64 247.7 144 79.9
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 1.2e-63 247.3 144 79.9
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 2.7e-63 246.1 144 78.5
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 2.7e-63 246.1 143 78.3
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 3.5e-63 245.7 143 79.7
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 3.5e-63 245.7 144 78.5
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 6.0e-63 245.0 143 77.6
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 1.0e-62 244.2 144 77.8
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 1.0e-62 244.2 144 78.5
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 1.3e-62 243.8 144 77.8
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 1.3e-62 243.8 144 77.1
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 1.8e-62 243.4 144 76.4
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 3.0e-62 242.7 144 77.1
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 8.7e-62 241.1 146 80.8
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 5.7e-61 238.4 144 77.1
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 5.7e-61 238.4 145 75.2
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 5.7e-61 238.4 141 79.4
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 1.3e-60 237.3 144 77.1
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 1.8e-59 233.4 145 76.6
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 2.4e-59 233.0 145 75.2
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 3.1e-59 232.6 161 68.9
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 6.9e-59 231.5 134 79.9
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 6.9e-59 231.5 143 74.1
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 2.6e-58 229.6 154 76.0
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 4.5e-58 228.8 171 65.5
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 1.1e-56 224.2 147 72.8
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 9.3e-56 221.1 146 73.3
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 3.5e-55 219.2 133 81.2
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 1.1e-53 214.2 143 70.6
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 1.9e-53 213.4 143 69.9
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 7.7e-50 201.4 142 64.1
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 1.3e-49 200.7 137 67.2
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 1.7e-49 200.3 144 66.0
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 3.8e-49 199.1 142 63.4
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 3.8e-49 199.1 144 70.1
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 6.5e-49 198.4 142 66.2
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 2.1e-47 193.4 112 82.1
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 1.8e-46 190.3 111 81.1
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.1e-45 187.6 110 81.8
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 5.7e-45 185.3 110 80.0
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 2.4e-43 179.9 111 74.8
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 9.1e-43 177.9 110 75.5
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 3.6e-39 166.0 123 65.0
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 2.0e-37 160.2 92 85.9
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 2.6e-34 149.8 141 55.3
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 1.3e-33 147.5 89 79.8
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 5.0e-33 145.6 85 74.1
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 1.5e-32 144.1 85 72.9
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 7.2e-32 141.7 124 58.9
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 1.2e-31 141.0 148 50.7
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 1.8e-30 137.1 199 40.2
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 9.7e-29 131.3 89 71.9
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 1.2e-26 124.4 88 68.2
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 1.9e-24 117.1 55 92.7
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 8.0e-23 111.7 147 46.9
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 1.2e-21 107.8 144 41.7
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 8.5e-17 91.7 82 53.7
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 2.7e-10 70.1 34 88.2
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 7.7e-10 68.6 47 66.0
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 1.1e-08 64.7 33 84.8
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 2.5e-08 63.5 37 81.1
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 5.6e-08 62.4 80 47.5
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 5.6e-08 62.4 138 27.5
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 9.5e-08 61.6 138 30.4
Hund03480 Selenicereus undatus HOM05D005663 ORTHO05D007258 1.2e-07 61.2 144 29.2
Lsat_1_v5_gn_4_138241 Lactuca sativa HOM05D005663 ORTHO05D007258 2.8e-07 60.1 138 29.0
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 4.7e-07 59.3 138 29.7
HPP92_016149 Vanilla planifolia HOM05D005663 ORTHO05D007258 6.1e-07 58.9 138 26.8
Actinidia06667 Actinidia chinensis HOM05D005663 ORTHO05D007258 8.0e-07 58.5 137 27.7
Medtr8g092680 Medicago truncatula HOM05D005663 ORTHO05D007258 1.0e-06 58.2 137 27.7
Haze_25191 Corylus avellana HOM05D005663 ORTHO05D007258 2.3e-06 57.0 138 27.5
QL06p051868 Quercus lobata HOM05D005663 ORTHO05D007258 3.0e-06 56.6 137 26.3
TPR.G2176 Trifolium pratense HOM05D005663 ORTHO05D007258 3.0e-06 56.6 137 27.0
Cc07_g17370 Coffea canephora HOM05D005663 ORTHO05D007258 5.2e-06 55.8 138 28.3
Mapoly0058s0022 Marchantia polymorpha HOM05D005663 ORTHO05D007258 5.2e-06 55.8 137 30.7
vmacro18658 Vaccinium macrocarpon HOM05D005663 ORTHO05D007258 5.2e-06 55.8 144 26.4


User provided reference genes

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