Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39041 Trifolium pratense HOM05D000729 ORTHO05D001063 4.1e-47 191.0 97 100.0
Lj4g0028091 Lotus japonicus HOM05D000729 ORTHO05D001063 2.4e-39 165.2 97 87.6
Hma1.2p1_0052F.1_g030753 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 7.1e-39 163.7 97 86.6
Hma1.2p1_0052F.1_g030756 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 7.1e-39 163.7 97 86.6
Hma1.2p1_1244F.1_g270050 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 7.1e-39 163.7 97 86.6
Hma1.2p1_1244F.1_g270060 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 7.1e-39 163.7 97 86.6
Gohir.A11G180330 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.2e-38 162.9 97 85.6
Lalb_Chr05g0227471 Lupinus albus HOM05D000729 ORTHO05D001063 1.2e-38 162.9 97 86.6
ATCG00890 Arabidopsis thaliana HOM05D000729 ORTHO05D001063 2.1e-38 162.2 97 85.6
ATCG01250 Arabidopsis thaliana HOM05D000729 ORTHO05D001063 2.1e-38 162.2 97 85.6
Medtr3g035660 Medicago truncatula HOM05D000729 ORTHO05D001063 2.1e-38 162.2 97 85.6
Phvul.003G089803 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 2.1e-38 162.2 97 85.6
Phvul.009G090284 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 2.1e-38 162.2 97 85.6
QL93p0823_0001 Quercus lobata HOM05D000729 ORTHO05D001063 2.1e-38 162.2 97 86.6
arahy.Tifrunner.gnm1.ann1.8IFR8Y Arachis hypogaea HOM05D000729 ORTHO05D001063 2.7e-38 161.8 97 85.6
arahy.Tifrunner.gnm1.ann1.A85ADF Arachis hypogaea HOM05D000729 ORTHO05D001063 2.7e-38 161.8 97 85.6
arahy.Tifrunner.gnm1.ann1.FU0XIN Arachis hypogaea HOM05D000729 ORTHO05D001063 2.7e-38 161.8 97 85.6
arahy.Tifrunner.gnm1.ann1.NGJ0AN Arachis hypogaea HOM05D000729 ORTHO05D001063 2.7e-38 161.8 97 85.6
arahy.Tifrunner.gnm1.ann1.NIYG2M Arachis hypogaea HOM05D000729 ORTHO05D001063 2.7e-38 161.8 97 85.6
arahy.Tifrunner.gnm1.ann1.S6TNUT Arachis hypogaea HOM05D000729 ORTHO05D001063 2.7e-38 161.8 97 85.6
Gohir.A05G323796 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.7e-38 161.8 97 85.6
Lalb_Chr07g0191911 Lupinus albus HOM05D000729 ORTHO05D001063 2.7e-38 161.8 97 85.6
Nn029s41589 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.7e-38 161.8 97 85.6
Nn206s45070 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.7e-38 161.8 97 85.6
Nn219s45285 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.7e-38 161.8 97 85.6
Nn233s45562 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.7e-38 161.8 97 85.6
Nn269s46006 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.7e-38 161.8 97 85.6
PGR111G0104 Punica granatum HOM05D000729 ORTHO05D001063 2.7e-38 161.8 97 85.6
PGR111G0125 Punica granatum HOM05D000729 ORTHO05D001063 2.7e-38 161.8 97 85.6
Sed0001647 Sechium edule HOM05D000729 ORTHO05D001063 2.7e-38 161.8 97 85.6
CAN.G1045.7 Capsicum annuum HOM05D000729 ORTHO05D001063 3.5e-38 161.4 97 85.6
CAN.G1875.3 Capsicum annuum HOM05D000729 ORTHO05D001063 3.5e-38 161.4 97 85.6
CAN.G21.56 Capsicum annuum HOM05D000729 ORTHO05D001063 3.5e-38 161.4 97 85.6
CAN.G267.19 Capsicum annuum HOM05D000729 ORTHO05D001063 3.5e-38 161.4 97 85.6
CAN.G343.3 Capsicum annuum HOM05D000729 ORTHO05D001063 3.5e-38 161.4 97 85.6
CAN.G547.17 Capsicum annuum HOM05D000729 ORTHO05D001063 3.5e-38 161.4 97 85.6
Lsat_1_v5_gn_3_92301 Lactuca sativa HOM05D000729 ORTHO05D001063 3.5e-38 161.4 97 85.6
Lsat_1_v5_gn_9_18660 Lactuca sativa HOM05D000729 ORTHO05D001063 3.5e-38 161.4 97 85.6
LjContig00319g0001918 Lotus japonicus HOM05D000729 ORTHO05D001063 3.5e-38 161.4 97 85.6
PSO548G0058 Papaver somniferum HOM05D000729 ORTHO05D001063 4.6e-38 161.0 97 84.5
PSO548G0065 Papaver somniferum HOM05D000729 ORTHO05D001063 4.6e-38 161.0 97 84.5
AL1G51260 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 6.0e-38 160.6 97 84.5
AL7G44080 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 6.0e-38 160.6 97 84.5
RcHm_v2.0_Chr5g0051111 Rosa chinensis HOM05D000729 ORTHO05D001063 7.8e-38 160.2 97 85.6
RcHm_v2.0_CPg0501771 Rosa chinensis HOM05D000729 ORTHO05D001063 7.8e-38 160.2 97 85.6
RcHm_v2.0_CPg0502641 Rosa chinensis HOM05D000729 ORTHO05D001063 7.8e-38 160.2 97 85.6
AL2G21870 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 1.3e-37 159.5 97 83.5
Gorai.003G150500 Gossypium raimondii HOM05D000729 ORTHO05D001063 1.3e-37 159.5 97 84.5
CSS0038723 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
Gohir.D06G107201 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
HanXRQChr00c0264g0572891 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
HanXRQChr00c0386g0574421 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
HanXRQChr00c0434g0574661 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
HanXRQChr00c0554g0575661 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
HanXRQChr00c0788g0577381 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
HanXRQChr01g0020151 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
HanXRQChr05g0150471 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
HanXRQChr05g0152351 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
HanXRQChr05g0152491 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
HanXRQChr07g0194901 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
HanXRQChr10g0284481 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
HanXRQChr10g0317951 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
HanXRQChr11g0321181 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
HanXRQChr11g0327111 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
HanXRQChr11g0333791 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
HanXRQChr12g0369921 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
HanXRQChr13g0416581 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
HanXRQChr17g0569661 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
HanXRQCPg0580271 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
HanXRQCPg0580451 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 84.5
SabraPtG0004800 Salix brachista HOM05D000729 ORTHO05D001063 1.7e-37 159.1 97 83.5
Gohir.A02G077402 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.3e-37 158.7 97 82.5
HanXRQChr13g0418941 Helianthus annuus HOM05D000729 ORTHO05D001063 2.3e-37 158.7 97 84.5
DCAR_032530 Daucus carota HOM05D000729 ORTHO05D001063 3.0e-37 158.3 97 84.5
DCAR_032546 Daucus carota HOM05D000729 ORTHO05D001063 3.0e-37 158.3 97 84.5
FAN24G1010 Fragaria x ananassa HOM05D000729 ORTHO05D001063 3.0e-37 158.3 97 84.5
Lj2P1238T95 Lonicera japonica HOM05D000729 ORTHO05D001063 3.0e-37 158.3 97 84.5
Lj2P1239T117 Lonicera japonica HOM05D000729 ORTHO05D001063 3.0e-37 158.3 97 84.5
Medtr0002s0310 Medicago truncatula HOM05D000729 ORTHO05D001063 3.0e-37 158.3 97 83.5
EL10As15g24113 Beta vulgaris HOM05D000729 ORTHO05D001063 3.9e-37 157.9 97 83.5
Gohir.D01G101839 Gossypium hirsutum HOM05D000729 ORTHO05D001063 3.9e-37 157.9 97 83.5
BolSC29t60494H Brassica oleracea HOM05D000729 ORTHO05D001063 8.7e-37 156.8 97 82.5
BolSC29t60537H Brassica oleracea HOM05D000729 ORTHO05D001063 8.7e-37 156.8 97 82.5
BolSC45t60922H Brassica oleracea HOM05D000729 ORTHO05D001063 8.7e-37 156.8 97 82.5
BolSC47t61055H Brassica oleracea HOM05D000729 ORTHO05D001063 8.7e-37 156.8 97 82.5
BraSC103t45436Z Brassica rapa HOM05D000729 ORTHO05D001063 8.7e-37 156.8 97 82.5
BraSC25t45897Z Brassica rapa HOM05D000729 ORTHO05D001063 8.7e-37 156.8 97 82.5
BraSC59t46538Z Brassica rapa HOM05D000729 ORTHO05D001063 8.7e-37 156.8 97 82.5
BraSC59t46561Z Brassica rapa HOM05D000729 ORTHO05D001063 8.7e-37 156.8 97 82.5
SalBow1G3941 Salvia bowleyana HOM05D000729 ORTHO05D001063 8.7e-37 156.8 97 83.5
SalBow1G4562 Salvia bowleyana HOM05D000729 ORTHO05D001063 8.7e-37 156.8 97 83.5
SalBow1G6647 Salvia bowleyana HOM05D000729 ORTHO05D001063 8.7e-37 156.8 97 83.5
LjContig00489g0003974 Lotus japonicus HOM05D000729 ORTHO05D001063 1.1e-36 156.4 99 83.8
Solyc00g500146.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 1.1e-36 156.4 97 83.5
EL10Ac5g11886 Beta vulgaris HOM05D000729 ORTHO05D001063 3.3e-36 154.8 97 82.5
BraSC103t45493Z Brassica rapa HOM05D000729 ORTHO05D001063 3.3e-36 154.8 93 83.9
CAN.G1148.5 Capsicum annuum HOM05D000729 ORTHO05D001063 3.3e-36 154.8 97 83.5
arahy.Tifrunner.gnm1.ann1.R4S00L Arachis hypogaea HOM05D000729 ORTHO05D001063 5.6e-36 154.1 97 83.5
HanXRQChr00c0585g0576201 Helianthus annuus HOM05D000729 ORTHO05D001063 5.6e-36 154.1 92 85.9
CAN.G1191.10 Capsicum annuum HOM05D000729 ORTHO05D001063 7.3e-36 153.7 97 82.5
RcHm_v2.0_Chr2g0118411 Rosa chinensis HOM05D000729 ORTHO05D001063 1.6e-35 152.5 97 82.5
Potri.011G075051 Populus trichocarpa HOM05D000729 ORTHO05D001063 2.1e-35 152.1 97 80.4
Lsat_1_v5_gn_4_11820 Lactuca sativa HOM05D000729 ORTHO05D001063 3.6e-35 151.4 97 80.4
Cpa.g.sc2.66 Carica papaya HOM05D000729 ORTHO05D001063 4.8e-35 151.0 97 80.4
Oeu012825.1 Olea europaea HOM05D000729 ORTHO05D001063 2.4e-34 148.7 97 78.4
CAN.G1021.15 Capsicum annuum HOM05D000729 ORTHO05D001063 3.1e-34 148.3 97 81.4
Gohir.A08G249972 Gossypium hirsutum HOM05D000729 ORTHO05D001063 3.1e-34 148.3 97 82.5
arahy.Tifrunner.gnm1.ann1.0BYT70 Arachis hypogaea HOM05D000729 ORTHO05D001063 9.0e-34 146.7 97 79.4
CAN.G262.3 Capsicum annuum HOM05D000729 ORTHO05D001063 3.4e-33 144.8 91 84.6
Lalb_Chr12g0206641 Lupinus albus HOM05D000729 ORTHO05D001063 2.2e-32 142.1 87 85.1
Gohir.D02G143001 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.4e-31 138.7 92 81.5
Gorai.005G160600 Gossypium raimondii HOM05D000729 ORTHO05D001063 5.4e-31 137.5 92 81.5
Solyc10g061887.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 1.2e-30 136.3 79 87.3
HanXRQChr03g0064311 Helianthus annuus HOM05D000729 ORTHO05D001063 7.9e-30 133.7 85 83.5
Solyc11g021090.3 Solanum lycopersicum HOM05D000729 ORTHO05D001063 1.3e-29 132.9 88 80.7
arahy.Tifrunner.gnm1.ann1.IXN31S Arachis hypogaea HOM05D000729 ORTHO05D001063 6.9e-26 120.6 96 69.8
CARHR282330 Cardamine hirsuta HOM05D000729 ORTHO05D001063 6.9e-26 120.6 97 67.0
CARHR282530 Cardamine hirsuta HOM05D000729 ORTHO05D001063 6.9e-26 120.6 97 67.0
Psat0s2011g0040 Pisum sativum HOM05D000729 ORTHO05D001063 6.9e-26 120.6 69 85.5
AL9U12020 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 2.0e-25 119.0 97 66.0
Migut.D01322 Erythranthe guttata HOM05D000729 ORTHO05D001063 4.5e-25 117.9 97 66.0
Lsat_1_v5_gn_5_163541 Lactuca sativa HOM05D000729 ORTHO05D001063 4.5e-25 117.9 96 67.7
Gohir.A09G046338 Gossypium hirsutum HOM05D000729 ORTHO05D001063 7.6e-25 117.1 97 70.1
Gohir.D02G117466 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.2e-24 115.5 97 70.1
Gorai.010G067500 Gossypium raimondii HOM05D000729 ORTHO05D001063 6.4e-24 114.0 74 81.1
HanXRQChr17g0567651 Helianthus annuus HOM05D000729 ORTHO05D001063 6.4e-24 114.0 97 69.1
HanXRQChr00c0349g0574001 Helianthus annuus HOM05D000729 ORTHO05D001063 3.5e-22 108.2 62 87.1
BraSC58t46469Z Brassica rapa HOM05D000729 ORTHO05D001063 1.3e-21 106.3 61 85.2
Gorai.003G065500 Gossypium raimondii HOM05D000729 ORTHO05D001063 2.3e-21 105.5 75 76.0
Solyc04g039790.3 Solanum lycopersicum HOM05D000729 ORTHO05D001063 2.3e-21 105.5 75 80.0
Nitab4.5_0004929g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 6.7e-21 104.0 72 77.8
SEGI_37255 Sequoiadendron giganteum HOM05D000729 ORTHO05D001063 8.7e-21 103.6 61 80.3
Gohir.D11G234166 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.5e-20 102.1 75 74.7
HanXRQChr00c0451g0574811 Helianthus annuus HOM05D000729 ORTHO05D001063 2.5e-20 102.1 70 81.4
Eucgr.J02732 Eucalyptus grandis HOM05D000729 ORTHO05D001063 9.6e-20 100.1 59 83.1
Thhalv10027086m.g Eutrema salsugineum HOM05D000729 ORTHO05D001063 1.6e-19 99.4 67 74.6
HanXRQChr00c0533g0575531 Helianthus annuus HOM05D000729 ORTHO05D001063 2.1e-19 99.0 97 62.9
Nitab4.5_0018575g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 2.8e-19 98.6 97 59.8
EL10As12g24040 Beta vulgaris HOM05D000729 ORTHO05D001063 1.8e-18 95.9 97 58.8
EL10As15g24106 Beta vulgaris HOM05D000729 ORTHO05D001063 4.0e-18 94.7 126 49.2
Nitab4.5_0012260g0090 Nicotiana tabacum HOM05D000729 ORTHO05D001063 4.0e-18 94.7 96 58.3
HanXRQChr00c0572g0575991 Helianthus annuus HOM05D000729 ORTHO05D001063 6.9e-18 94.0 86 67.4
CSS0015256 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 2.0e-17 92.4 97 57.7
Migut.D01404 Erythranthe guttata HOM05D000729 ORTHO05D001063 5.8e-17 90.9 59 81.4
CSS0022865 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 7.6e-17 90.5 63 77.8
HanXRQChr02g0059631 Helianthus annuus HOM05D000729 ORTHO05D001063 1.0e-16 90.1 48 89.6
Nn241s45687 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.1e-15 86.7 53 84.9
Lalb_Chr04g0260201 Lupinus albus HOM05D000729 ORTHO05D001063 7.1e-15 84.0 60 73.3
Solyc01g017260.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 1.2e-14 83.2 74 63.5
Gohir.D11G278650 Gossypium hirsutum HOM05D000729 ORTHO05D001063 3.5e-14 81.6 66 69.7
Gorai.007G300800 Gossypium raimondii HOM05D000729 ORTHO05D001063 1.8e-13 79.3 62 71.0
Glyma.05G094500 Glycine max HOM05D000729 ORTHO05D001063 5.1e-13 77.8 55 74.5
Sed0019191 Sechium edule HOM05D000729 ORTHO05D001063 2.5e-12 75.5 37 91.9
Nitab4.5_0005246g0030 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.3e-11 73.2 96 53.1
Nitab4.5_0027450g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.4e-10 69.7 97 49.5
Solyc09g055840.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 3.1e-10 68.6 44 79.5
EL10Ac8g19099 Beta vulgaris HOM05D000729 ORTHO05D001063 6.9e-10 67.4 44 77.3
Nitab4.5_0012558g0030 Nicotiana tabacum HOM05D000729 ORTHO05D001063 6.9e-10 67.4 37 81.1
SMO086G0067 Selaginella moellendorffii HOM05D000729 ORTHO05D001063 6.9e-10 67.4 93 49.5
Solyc12g027820.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 6.9e-10 67.4 44 79.5
Nitab4.5_0001761g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 2.0e-09 65.9 56 69.6
Glyma.01G201500 Glycine max HOM05D000729 ORTHO05D001063 2.6e-09 65.5 44 77.3
Solyc03g122010.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 2.6e-09 65.5 41 78.0
Nitab4.5_0003706g0020 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.0e-08 63.5 61 63.9
EL10As15g24115 Beta vulgaris HOM05D000729 ORTHO05D001063 1.7e-08 62.8 48 70.8
Lalb_Chr25g0281841 Lupinus albus HOM05D000729 ORTHO05D001063 1.1e-07 60.1 43 69.8
Migut.D01376 Erythranthe guttata HOM05D000729 ORTHO05D001063 1.9e-07 59.3 37 81.1
HanXRQChr00c0747g0577151 Helianthus annuus HOM05D000729 ORTHO05D001063 3.2e-07 58.5 54 64.8
HanXRQChr00c0454g0574901 Helianthus annuus HOM05D000729 ORTHO05D001063 4.2e-07 58.2 31 77.4
Medtr3g091540 Medicago truncatula HOM05D000729 ORTHO05D001063 9.3e-07 57.0 35 82.9
Nitab4.5_0000241g0080 Nicotiana tabacum HOM05D000729 ORTHO05D001063 7.9e-06 53.9 96 44.8


User provided reference genes

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