Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38977 Trifolium pratense HOM05D007708 ORTHO05D009506 1.4e-56 222.6 109 100.0
Medtr2g080030 Medicago truncatula HOM05D007708 ORTHO05D009506 1.3e-44 183.0 111 84.7
Psat5g246000 Pisum sativum HOM05D007708 ORTHO05D009506 8.2e-44 180.3 108 83.3
Ca_01817_v3 Cicer arietinum L. HOM05D007708 ORTHO05D009506 3.5e-42 174.9 107 82.2
Lj3g0000986 Lotus japonicus HOM05D007708 ORTHO05D009506 1.2e-34 149.8 103 73.8
Glyma.12G221200 Glycine max HOM05D007708 ORTHO05D009506 2.0e-34 149.1 114 68.4
Phvul.005G084800 Phaseolus vulgaris HOM05D007708 ORTHO05D009506 2.9e-33 145.2 114 69.3
VMungo1080G0096 Vigna mungo HOM05D007708 ORTHO05D009506 4.2e-32 141.4 115 68.7
Glyma.13G280400 Glycine max HOM05D007708 ORTHO05D009506 6.8e-30 134.0 114 63.2
Lalb_Chr07g0181711 Lupinus albus HOM05D007708 ORTHO05D009506 4.1e-27 124.8 107 62.6
QL08p019254 Quercus lobata HOM05D007708 ORTHO05D009506 1.5e-24 116.3 85 65.9
Potri.011G123600 Populus trichocarpa HOM05D007708 ORTHO05D009506 4.2e-24 114.8 109 52.3
Manes.03G114400 Manihot esculenta HOM05D007708 ORTHO05D009506 5.5e-24 114.4 100 61.0
Potri.001G404500 Populus trichocarpa HOM05D007708 ORTHO05D009506 2.3e-22 109.0 109 53.2
Haze_09495 Corylus avellana HOM05D007708 ORTHO05D009506 3.4e-21 105.1 103 52.4
Duzib268G1443 Durio zibethinus HOM05D007708 ORTHO05D009506 9.8e-21 103.6 111 45.9
CARHR090570 Cardamine hirsuta HOM05D007708 ORTHO05D009506 3.1e-19 98.6 73 61.6
RcHm_v2.0_Chr5g0034861 Rosa chinensis HOM05D007708 ORTHO05D009506 7.0e-19 97.4 114 51.8
Aa31LG8G2750 Aethionema arabicum HOM05D007708 ORTHO05D009506 9.2e-19 97.1 106 50.0
AT3G15518 Arabidopsis thaliana HOM05D007708 ORTHO05D009506 9.2e-19 97.1 71 62.0
Gohir.D01G054100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.2e-18 96.7 85 61.2
BcaB06g29586 Brassica carinata HOM05D007708 ORTHO05D009506 2.0e-18 95.9 81 55.6
Thhalv10021811m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 2.0e-18 95.9 71 60.6
Sp3g13770 Schrenkiella parvula HOM05D007708 ORTHO05D009506 2.0e-18 95.9 71 60.6
AL3G28090 Arabidopsis lyrata HOM05D007708 ORTHO05D009506 2.7e-18 95.5 71 60.6
CiPaw.11G174300 Carya illinoinensis HOM05D007708 ORTHO05D009506 3.5e-18 95.1 82 57.3
A05p33900 Brassica napus HOM05D007708 ORTHO05D009506 4.5e-18 94.7 73 58.9
BraA05t22212Z Brassica rapa HOM05D007708 ORTHO05D009506 4.5e-18 94.7 73 58.9
Eucgr.F03340 Eucalyptus grandis HOM05D007708 ORTHO05D009506 5.9e-18 94.4 73 60.3
Gohir.A01G066900 Gossypium hirsutum HOM05D007708 ORTHO05D009506 5.9e-18 94.4 103 51.5
Gorai.002G073900 Gossypium raimondii HOM05D007708 ORTHO05D009506 5.9e-18 94.4 103 52.4
Aa31LG10G2210 Aethionema arabicum HOM05D007708 ORTHO05D009506 7.8e-18 94.0 75 60.0
Carub.0003s1524 Capsella rubella HOM05D007708 ORTHO05D009506 7.8e-18 94.0 71 59.2
Prupe.4G187200 Prunus persica HOM05D007708 ORTHO05D009506 1.0e-17 93.6 68 66.2
BcaC05g28966 Brassica carinata HOM05D007708 ORTHO05D009506 1.7e-17 92.8 73 57.5
C05p51610 Brassica napus HOM05D007708 ORTHO05D009506 1.7e-17 92.8 73 57.5
BolC5t33849H Brassica oleracea HOM05D007708 ORTHO05D009506 1.7e-17 92.8 73 57.5
Cfa020536 Carpinus fangiana HOM05D007708 ORTHO05D009506 1.7e-17 92.8 112 46.4
FvH4_3g20710 Fragaria vesca HOM05D007708 ORTHO05D009506 2.3e-17 92.4 122 49.2
FAN11G2360 Fragaria x ananassa HOM05D007708 ORTHO05D009506 2.3e-17 92.4 122 49.2
FAN16G0929 Fragaria x ananassa HOM05D007708 ORTHO05D009506 2.9e-17 92.0 80 60.0
FAN25G1391 Fragaria x ananassa HOM05D007708 ORTHO05D009506 3.8e-17 91.7 122 46.7
BcaB04g20921 Brassica carinata HOM05D007708 ORTHO05D009506 6.6e-17 90.9 71 59.2
Thecc.07G075600 Theobroma cacao HOM05D007708 ORTHO05D009506 8.6e-17 90.5 112 45.5
FAN21G3926 Fragaria x ananassa HOM05D007708 ORTHO05D009506 1.1e-16 90.1 122 45.9
Glyma.06G249202 Glycine max HOM05D007708 ORTHO05D009506 1.1e-16 90.1 111 51.4
TWI38G1724 Tripterygium wilfordii HOM05D007708 ORTHO05D009506 1.5e-16 89.7 107 51.4
THA.LOC104810490 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 2.5e-16 89.0 106 46.2
THA.LOC104818058 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 2.5e-16 89.0 109 44.0
BcaC09g48516 Brassica carinata HOM05D007708 ORTHO05D009506 3.3e-16 88.6 69 59.4
BcaC09g48517 Brassica carinata HOM05D007708 ORTHO05D009506 3.3e-16 88.6 69 59.4
BolC1t04856H Brassica oleracea HOM05D007708 ORTHO05D009506 3.3e-16 88.6 69 59.4
Ciclev10009880m.g Citrus clementina HOM05D007708 ORTHO05D009506 7.3e-16 87.4 76 60.5
Gohir.A04G028100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 7.3e-16 87.4 75 56.0
Gohir.D05G360000 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.2e-15 86.7 75 56.0
Gorai.009G432700 Gossypium raimondii HOM05D007708 ORTHO05D009506 1.2e-15 86.7 75 56.0
Thhalv10012270m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 8.0e-15 84.0 74 56.8
MD03G1222500 Malus domestica HOM05D007708 ORTHO05D009506 8.0e-15 84.0 71 59.2
MD11G1239800 Malus domestica HOM05D007708 ORTHO05D009506 3.0e-14 82.0 78 57.7
Atru.chr2.2769 Acer truncatum HOM05D007708 ORTHO05D009506 4.0e-14 81.6 66 62.1
Sp1g39450 Schrenkiella parvula HOM05D000067 ORTHO05D000097 4.0e-14 81.6 67 56.7
BcaC08g43472 Brassica carinata HOM05D007708 ORTHO05D009506 2.0e-13 79.3 100 48.0
C06p08550 Brassica napus HOM05D007708 ORTHO05D009506 2.0e-13 79.3 100 48.0
BolC6t35934H Brassica oleracea HOM05D007708 ORTHO05D009506 2.0e-13 79.3 100 48.0
A06p01470 Brassica napus HOM05D007708 ORTHO05D009506 5.8e-13 77.8 98 46.9
BraA06t23368Z Brassica rapa HOM05D007708 ORTHO05D009506 5.8e-13 77.8 98 46.9
BcaB07g33383 Brassica carinata HOM05D007708 ORTHO05D009506 7.5e-13 77.4 76 56.6
MELO3C018234.2 Cucumis melo HOM05D007708 ORTHO05D009506 9.8e-13 77.0 97 45.4
ClCG11G018300 Citrullus lanatus HOM05D007708 ORTHO05D009506 2.2e-12 75.9 72 55.6
CsaV3_3G044520 Cucumis sativus L. HOM05D007708 ORTHO05D009506 4.9e-12 74.7 94 44.7
Nn1g06676 Nelumbo nucifera HOM05D007708 ORTHO05D009506 2.4e-11 72.4 102 43.1
TAR626G1828 Trochodendron aralioides HOM05D007708 ORTHO05D009506 5.4e-11 71.2 111 42.3
BcaC09g48515 Brassica carinata HOM05D007708 ORTHO05D009506 1.6e-10 69.7 69 49.3
Lalb_Chr19g0134351 Lupinus albus HOM05D007708 ORTHO05D009506 2.3e-09 65.9 101 44.6
DCAR_013081 Daucus carota HOM05D007708 ORTHO05D009506 1.1e-08 63.5 47 63.8
Ah.06g183770 Amaranthus hybridus HOM05D023068 ORTHO05D009506 1.5e-08 63.2 48 60.4
MBI02_g19254_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 2.5e-08 62.4 103 38.8
Sc16g0006840 Simmondsia chinensis HOM05D007708 ORTHO05D009506 2.5e-08 62.4 52 65.4
AUR62015628 Chenopodium quinoa HOM05D023068 ORTHO05D009506 3.3e-08 62.0 51 54.9
Lsat_1_v5_gn_5_7381 Lactuca sativa HOM05D007708 ORTHO05D009506 3.3e-08 62.0 42 66.7
COL.COLO4_09450 Corchorus olitorius HOM05D007708 ORTHO05D009506 4.3e-08 61.6 47 63.8
Sed0014711 Sechium edule HOM05D007708 ORTHO05D009506 4.3e-08 61.6 66 50.0
Sed0019748 Sechium edule HOM05D007708 ORTHO05D009506 5.6e-08 61.2 75 46.7
AUR62029333 Chenopodium quinoa HOM05D023068 ORTHO05D009506 7.3e-08 60.8 47 57.4
MBI02_g19253_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 9.5e-08 60.5 79 49.4
Aqoxy1G02627 Aquilegia oxysepala HOM05D007708 ORTHO05D009506 1.6e-07 59.7 54 53.7
Lsat_1_v5_gn_7_105741 Lactuca sativa HOM05D007708 ORTHO05D009506 2.1e-07 59.3 90 45.6
Migut.M00865 Erythranthe guttata HOM05D023068 ORTHO05D009506 4.7e-07 58.2 94 37.2
Ah.04g165060 Amaranthus hybridus HOM05D023068 ORTHO05D009506 6.2e-07 57.8 50 52.0
Cc05_g12520 Coffea canephora HOM05D007708 ORTHO05D009506 8.0e-07 57.4 43 62.8
CSS0032536 Camellia sinensis var. sinensis HOM05D007708 ORTHO05D009506 1.4e-06 56.6 121 34.7
Nitab4.5_0000662g0060 Nicotiana tabacum HOM05D007708 ORTHO05D009506 1.4e-06 56.6 87 40.2
Rhsim06G0195000 Rhododendron simsii HOM05D007708 ORTHO05D009506 4.0e-06 55.1 50 56.0


User provided reference genes

Program Settings