Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 4.6e-94 349.0 374 100.0
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 2.1e-86 323.6 173 96.0
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 1.7e-85 320.5 173 94.2
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 1.1e-82 311.2 173 90.8
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 3.1e-82 309.7 173 90.2
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 4.0e-82 309.3 173 89.6
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 4.0e-82 309.3 173 89.6
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 9.0e-82 308.1 173 89.0
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 1.5e-81 307.4 173 90.2
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 1.3e-80 304.3 170 88.8
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 1.4e-79 300.8 172 89.0
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 2.3e-77 293.5 172 85.5
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 7.4e-76 288.5 173 84.4
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 1.3e-75 287.7 172 83.1
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 1.3e-75 287.7 169 85.2
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 4.8e-75 285.8 173 85.0
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 8.1e-75 285.0 173 83.2
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 8.1e-75 285.0 173 83.2
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 1.1e-74 284.6 172 83.1
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 1.1e-74 284.6 172 84.3
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 1.4e-74 284.3 173 83.8
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 1.8e-74 283.9 172 85.5
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 2.4e-74 283.5 173 83.2
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 2.4e-74 283.5 173 82.1
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 3.1e-74 283.1 173 82.7
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 6.9e-74 282.0 170 82.9
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 1.2e-73 281.2 173 82.1
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.2e-73 281.2 169 83.4
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 1.5e-73 280.8 172 83.1
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 2.0e-73 280.4 173 82.1
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 2.0e-73 280.4 173 82.1
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 5.8e-73 278.9 169 82.8
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 5.8e-73 278.9 172 82.0
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 1.7e-72 277.3 168 82.7
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 1.7e-72 277.3 173 81.5
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 2.2e-72 276.9 173 80.9
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 2.2e-72 276.9 172 82.0
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 3.8e-72 276.2 173 80.9
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 3.8e-72 276.2 173 80.9
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 4.9e-72 275.8 172 82.0
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 4.9e-72 275.8 169 81.7
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 1.4e-71 274.2 169 82.8
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 2.5e-71 273.5 173 79.8
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 3.2e-71 273.1 173 80.3
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 4.2e-71 272.7 171 82.5
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 5.5e-71 272.3 173 82.1
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 2.1e-70 270.4 150 94.7
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 2.7e-70 270.0 173 79.8
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 1.0e-69 268.1 171 80.1
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 6.7e-69 265.4 173 76.9
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 2.5e-68 263.5 173 78.0
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 9.6e-68 261.5 166 80.1
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 9.6e-68 261.5 172 78.5
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 2.1e-67 260.4 172 76.7
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 2.1e-67 260.4 172 76.7
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 3.7e-67 259.6 172 79.7
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 3.7e-67 259.6 172 77.9
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 6.2e-67 258.8 173 76.9
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 6.9e-66 255.4 173 74.0
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 9.0e-66 255.0 173 74.6
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 1.2e-65 254.6 168 76.8
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 4.5e-65 252.7 217 65.4
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 1.3e-64 251.1 173 72.8
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 1.3e-64 251.1 173 72.8
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 1.3e-64 251.1 173 72.8
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 1.3e-64 251.1 173 72.8
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 1.3e-64 251.1 173 72.8
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 1.3e-64 251.1 172 76.2
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 1.7e-64 250.8 168 75.6
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 2.2e-64 250.4 167 76.0
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 2.9e-64 250.0 173 72.3
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 1.4e-63 247.7 171 73.1
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 5.5e-63 245.7 171 72.5
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 5.5e-63 245.7 171 72.5
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 3.5e-62 243.0 206 64.6
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 4.6e-62 242.7 170 75.3
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 4.6e-62 242.7 172 73.8
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 6.0e-62 242.3 156 78.8
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 3.0e-61 240.0 201 63.2
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 1.1e-60 238.0 173 71.1
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 7.4e-60 235.3 149 81.9
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 1.6e-59 234.2 168 72.0
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 6.3e-59 232.3 197 64.5
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 8.2e-59 231.9 152 79.6
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 1.8e-58 230.7 167 69.5
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 9.0e-58 228.4 170 70.0
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 2.6e-57 226.9 171 70.2
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 7.7e-57 225.3 167 69.5
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 8.5e-56 221.9 160 74.4
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 1.4e-55 221.1 169 68.0
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 3.2e-55 219.9 149 77.2
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 5.5e-55 219.2 189 65.6
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 3.0e-53 213.4 156 71.8
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 5.7e-52 209.1 167 65.9
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 3.7e-51 206.5 169 63.3
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 2.5e-47 193.7 150 68.7
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 4.2e-47 193.0 131 72.5
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 3.0e-45 186.8 119 82.4
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 1.9e-31 141.0 73 87.7
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 2.1e-30 137.5 93 82.8
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.0e-29 135.2 108 66.7
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.0e-29 135.2 108 66.7
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 8.3e-27 125.6 68 82.4
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 3.1e-26 123.6 65 86.2
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 9.1e-26 122.1 123 58.5
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 2.7e-25 120.6 160 44.4
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 1.1e-23 115.2 93 67.7
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 3.6e-22 110.2 171 38.0
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 1.4e-21 108.2 79 77.2
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 8.8e-21 105.5 66 68.2
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 1.6e-17 94.7 69 78.3
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 2.0e-17 94.4 78 71.8
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 1.3e-16 91.7 78 69.2
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 2.9e-16 90.5 75 61.3
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 2.5e-15 87.4 51 92.2
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 8.0e-14 82.4 97 52.6
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 3.0e-13 80.5 64 71.9
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 1.8e-10 71.2 40 92.5
arahy.Tifrunner.gnm1.ann1.VIP1CP Arachis hypogaea HOM05D000058 ORTHO05D008505 7.8e-09 65.9 35 88.6
arahy.Tifrunner.gnm1.ann1.ZC4B2S Arachis hypogaea HOM05D001903 ORTHO05D001847 1.3e-08 65.1 50 80.0
arahy.Tifrunner.gnm1.ann1.1E0HE3 Arachis hypogaea HOM05D001903 ORTHO05D013215 8.6e-08 62.4 36 88.9
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 5.6e-07 59.7 58 53.4


User provided reference genes

Program Settings